| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
DQ838728 |
Definition |
Lactococcus phage P335, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
33613 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
35.48 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ABI54248.1 | DQ838728_p45 | base plate protein | phrog_5983 | tail protein | tail | 1 | 27953 | 28786 |
| ABI54229.1 | DQ838728_p26 | unknown | singleton | unknown function | unknown function | 1 | 11628 | 12338 |
| AAR14304.2 | DQ838728_p6 | SSB | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 2480 | 2830 |
| ABI54249.1 | DQ838728_p46 | antireceptor | phrog_6465 | tail protein | tail | 1 | 28806 | 29288 |
| ABI54237.1 | DQ838728_p34 | unknown | phrog_132 | head-tail adaptor | connector | 1 | 18556 | 18888 |
| ABI54250.1 | DQ838728_p47 | unknown | phrog_689 | holin | lysis | 1 | 29371 | 29595 |
| ABI54228.1 | DQ838728_p25 | unknown | phrog_7693 | acetyltransferase | other | 1 | 11136 | 11516 |
| ABI54212.1 | DQ838728_p9 | RusA resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 3965 | 4354 |
| ABI54242.1 | DQ838728_p39 | unknown | phrog_183 | tail chaperone protein | tail | 1 | 20562 | 20912 |
| ABI54241.1 | DQ838728_p38 | major tail protein | phrog_238 | major tail protein | tail | 1 | 19949 | 20446 |
| ABI54223.1 | DQ838728_p20 | unknown | phrog_6072 | unknown function | unknown function | 1 | 8519 | 8764 |
| ABI54208.1 | DQ838728_p2 | unknown | singleton | unknown function | unknown function | 1 | 852 | 1160 |
| ABI54234.1 | DQ838728_p31 | scaffolding protein | phrog_2932 | head scaffolding protein | head and packaging | 1 | 16890 | 17552 |
| ABI54216.1 | DQ838728_p13 | unknown | phrog_4314 | unknown function | unknown function | 1 | 5323 | 5502 |
| ABI54215.1 | DQ838728_p12 | unknown | phrog_1709 | unknown function | unknown function | 1 | 4916 | 5224 |
| ABI54236.1 | DQ838728_p33 | unknown | phrog_2250 | unknown function | unknown function | 1 | 18372 | 18572 |
| ABI54211.1 | DQ838728_p8 | unknown | phrog_7699 | unknown function | unknown function | 1 | 3754 | 3975 |
| ABI54209.1 | DQ838728_p3 | transcriptional regulator | singleton | unknown function | unknown function | 1 | 1190 | 1324 |
| ABI54244.1 | DQ838728_p41 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 21281 | 23494 |
| ABI54251.1 | DQ838728_p48 | neck passage structure | phrog_28468 | minor head protein | head and packaging | 1 | 29607 | 31583 |
| ABI54232.1 | DQ838728_p29 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 14370 | 15728 |
| ABI54213.1 | DQ838728_p10 | unknown | singleton | unknown function | unknown function | 1 | 4359 | 4664 |
| ABI54239.1 | DQ838728_p36 | structural protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 19193 | 19552 |
| ABI54225.1 | DQ838728_p22 | transcriptional regulator | phrog_2198 | Alt-like transcription activator | transcription regulation | 1 | 9112 | 9534 |
| ABI54210.1 | DQ838728_p7 | replication protein | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 2964 | 3773 |
| ABI54224.1 | DQ838728_p21 | unknown | singleton | unknown function | unknown function | 1 | 8940 | 9035 |
| ABI54231.1 | DQ838728_p28 | large terminase subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 12981 | 14369 |
| ABI54221.1 | DQ838728_p18 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7467 | 7997 |
| ABI54220.1 | DQ838728_p17 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 7029 | 7448 |
| ABI54230.1 | DQ838728_p27 | small terminase subunit | phrog_309 | terminase small subunit | head and packaging | 1 | 12500 | 12988 |
| ABI54243.1 | DQ838728_p40 | unknown | phrog_441 | tail assembly chaperone | tail | 1 | 20996 | 21265 |
| ABI54217.1 | DQ838728_p14 | unknown | phrog_4149 | unknown function | unknown function | 1 | 5492 | 6061 |
| ABI54214.1 | DQ838728_p11 | unknown | phrog_3109 | unknown function | unknown function | 1 | 4661 | 4900 |
| ABI54246.1 | DQ838728_p43 | tail associated lysin | phrog_1067 | minor head protein | head and packaging | 1 | 24265 | 27021 |
| ABI54240.1 | DQ838728_p37 | structural protein | phrog_176 | tail terminator | connector | 1 | 19549 | 19938 |
| ABI54227.1 | DQ838728_p24 | ABC-transporter | phrog_293 | ABC transporter | moron, auxiliary metabolic gene and host takeover | 1 | 10462 | 11139 |
| ABI54222.1 | DQ838728_p19 | unknown | phrog_6209 | unknown function | unknown function | 1 | 8000 | 8497 |
| ABI54226.1 | DQ838728_p23 | unknown | phrog_620 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 9959 | 10483 |
| ABI54219.1 | DQ838728_p16 | unknown | phrog_121 | unknown function | unknown function | 1 | 6460 | 7032 |
| ABI54238.1 | DQ838728_p35 | unknown | phrog_348 | minor head protein | head and packaging | 1 | 18885 | 19196 |
| ABI54253.1 | DQ838728_p50 | endolysin | phrog_291 | endolysin | lysis | 1 | 32074 | 33369 |
| ABI54245.1 | DQ838728_p42 | distal tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 23504 | 24265 |
| AAR14302.1 | DQ838728_p4 | unknown | phrog_4729 | unknown function | unknown function | 1 | 1466 | 1861 |
| ABI54247.1 | DQ838728_p44 | base plate protein | phrog_8913 | minor head protein | head and packaging | 1 | 27034 | 28002 |
| ABI54207.1 | DQ838728_p1 | cro/cI like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 587 | 808 |
| ABI54235.1 | DQ838728_p32 | major capsid protein | phrog_544 | major head protein | head and packaging | 1 | 17554 | 18372 |
| ABI54218.1 | DQ838728_p15 | unknown | phrog_98 | unknown function | unknown function | 1 | 6072 | 6467 |
| ABI54233.1 | DQ838728_p30 | minor capsid protein | phrog_115 | minor head protein | head and packaging | 1 | 15732 | 16775 |
| AAR14303.1 | DQ838728_p5 | Erf recombinase | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 1872 | 2480 |
| ABI54252.1 | DQ838728_p49 | holin | phrog_297 | holin | lysis | 1 | 31811 | 32077 |