Genomic map of Pseudomonas phage PT5 (EU056923)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
EU056923
Definition
Pseudomonas phage PT5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus PT5.
DB of origin
PVOG
Length
42954
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
62.33
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ABW23114.1 EU056923_p35 hypothetical protein phrog_1018 head scaffolding protein head and packaging 1 23524 24492
ABW23119.1 EU056923_p40 injection needle component phrog_2083 internal virion lysozyme motif head and packaging 1 29231 31927
ABW23081.1 EU056923_p2 hypothetical protein phrog_7124 unknown function unknown function 1 2020 2247
ABW23105.1 EU056923_p26 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 16824 17870
ABW23094.1 EU056923_p15 hypothetical protein phrog_23126 unknown function unknown function 1 7499 7702
ABW23111.1 EU056923_p32 hypothetical protein phrog_3112 virion structural protein head and packaging 1 21680 21976
ABW23112.1 EU056923_p33 hypothetical protein phrog_18808 unknown function unknown function 1 21897 22064
ABW23095.1 EU056923_p16 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7675 8499
ABW23118.1 EU056923_p39 hypothetical protein phrog_805 internal virion protein head and packaging 1 28686 29231
ABW23113.1 EU056923_p34 hypothetical protein phrog_449 head-tail adaptor connector 1 21988 23520
ABW23098.1 EU056923_p19 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 10343 11290
ABW23120.1 EU056923_p41 internal core protein phrog_342 internal virion protein with endolysin domain head and packaging 1 31955 35944
ABW23123.1 EU056923_p44 structural protein phrog_4176 tail fiber protein tail 1 37215 38060
ABW23125.1 EU056923_p46 hypothetical protein phrog_891 terminase small subunit head and packaging 1 38669 38974
ABW23104.1 EU056923_p25 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16387 16827
ABW23088.1 EU056923_p9 hypothetical protein phrog_4342 unknown function unknown function 1 4649 4942
ABW23082.1 EU056923_p3 hypothetical protein phrog_1448 unknown function unknown function 1 2258 2797
ABW23122.1 EU056923_p43 hypothetical protein phrog_8874 tail fiber protein tail 1 36701 37159
ABW23091.1 EU056923_p12 DNA-binding protein phrog_6982 DNA polymerase DNA, RNA and nucleotide metabolism 1 5868 6677
ABW23108.1 EU056923_p29 DNA-dependent RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 18400 20850
ABW23124.1 EU056923_p45 hypothetical protein phrog_4950 tail fiber protein tail 1 38064 38669
ABW23097.1 EU056923_p18 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 9726 10343
ABW23089.1 EU056923_p10 hypothetical protein phrog_5433 unknown function unknown function 1 5021 5437
ABW23083.1 EU056923_p4 hypothetical protein phrog_6951 unknown function unknown function 1 3165 3533
ABW23100.1 EU056923_p21 DNA directed DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11619 14042
ABW23126.1 EU056923_p47 DNA maturase B phrog_38 terminase large subunit head and packaging 1 38983 40788
ABW23092.1 EU056923_p13 hypothetical protein phrog_9409 unknown function unknown function 1 6757 7176
ABW23107.1 EU056923_p28 hypothetical protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 18245 18391
ABW23116.1 EU056923_p37 tubular protein A phrog_446 tail protein tail 1 25649 26203
ABW23085.1 EU056923_p6 hypothetical protein phrog_8496 unknown function unknown function 1 3926 4105
ABW23129.1 EU056923_p50 hypothetical protein phrog_214 Rz-like spanin lysis 1 41422 41751
ABW23131.1 EU056923_p52 hypothetical protein phrog_7171 minor head protein head and packaging 1 42205 42399
ABW23086.1 EU056923_p7 hypothetical protein phrog_4342 unknown function unknown function 1 4105 4398
ABW23115.1 EU056923_p36 major capsid protein phrog_267 major head protein head and packaging 1 24545 25552
ABW23084.1 EU056923_p5 hypothetical protein phrog_7027 unknown function unknown function 1 3520 3747
ABW23121.1 EU056923_p42 tail fiber protein phrog_6953 tail fiber protein tail 1 35946 36701
ABW23117.1 EU056923_p38 tail tubular protein B phrog_457 tail protein tail 1 26206 28686
ABW23080.1 EU056923_p1 hypothetical protein phrog_5722 unknown function unknown function 1 1730 2020
ABW23106.1 EU056923_p27 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 17880 18248
ABW23087.1 EU056923_p8 hypothetical protein phrog_4955 unknown function unknown function 1 4395 4631
ABW23096.1 EU056923_p17 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8543 9736
ABW23090.1 EU056923_p11 hypothetical protein phrog_6915 unknown function unknown function 1 5506 5865
ABW23093.1 EU056923_p14 hypothetical protein phrog_2563 unknown function unknown function 1 6947 7489
ABW23128.1 EU056923_p49 phage lysozyme phrog_7 endolysin lysis 1 40982 41464
ABW23102.1 EU056923_p23 hypothetical protein phrog_862 unknown function unknown function 1 14407 15456
ABW23130.1 EU056923_p51 minor structural protein phrog_6908 minor head protein head and packaging 1 41841 42155
ABW23127.1 EU056923_p48 hypothetical protein phrog_6597 holin lysis 1 40785 40985
ABW23101.1 EU056923_p22 hypothetical protein phrog_5437 unknown function unknown function 1 14039 14350
ABW23099.1 EU056923_p20 hypothetical protein phrog_7292 unknown function unknown function 1 11287 11622
ABW23110.1 EU056923_p31 hypothetical protein phrog_3986 unknown function unknown function 1 21262 21735
ABW23103.1 EU056923_p24 hypothetical protein phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15456 16397
ABW23109.1 EU056923_p30 hypothetical protein phrog_6575 unknown function unknown function 1 21011 21262