| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
FJ848884 |
Definition |
Lactococcus phage CB19, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
PVOG |
Length |
28643 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
35.14 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ACU46951.1 | FJ848884_p31 | unknown | phrog_1508 | unknown function | unknown function | -1 | 20676 | 20795 |
| ACU46953.1 | FJ848884_p33 | unknown | phrog_4546 | unknown function | unknown function | -1 | 21096 | 21206 |
| ACU46959.1 | FJ848884_p39 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 22926 | 23549 |
| ACU46948.1 | FJ848884_p28 | unknown | phrog_2530 | unknown function | unknown function | -1 | 19805 | 19996 |
| ACU46950.1 | FJ848884_p30 | unknown | phrog_1225 | unknown function | unknown function | -1 | 20368 | 20676 |
| ACU46964.1 | FJ848884_p44 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 24846 | 25742 |
| ACU46922.1 | FJ848884_p2 | unknown | phrog_4501 | unknown function | unknown function | 1 | 787 | 1017 |
| ACU46923.1 | FJ848884_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1029 | 2651 |
| ACU46930.1 | FJ848884_p10 | unknown | phrog_1484 | virion structural protein | head and packaging | 1 | 6353 | 6691 |
| ACU46971.1 | FJ848884_p51 | unknown | phrog_6252 | unknown function | unknown function | 1 | 28416 | 28556 |
| ACU46935.1 | FJ848884_p15 | unknown | phrog_1421 | virion structural protein | head and packaging | 1 | 10336 | 10848 |
| ACU46949.1 | FJ848884_p29 | unknown | phrog_1509 | unknown function | unknown function | -1 | 20038 | 20295 |
| ACU46925.1 | FJ848884_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2938 | 4074 |
| ACU46969.1 | FJ848884_p49 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27348 | 27827 |
| ACU46928.1 | FJ848884_p8 | unknown | phrog_1428 | head-tail connector protein | connector | 1 | 5786 | 6049 |
| ACU46945.1 | FJ848884_p25 | unknown | phrog_1415 | unknown function | unknown function | -1 | 19113 | 19460 |
| ACU46942.1 | FJ848884_p22 | endolysin | phrog_670 | endolysin | lysis | 1 | 17315 | 18019 |
| ACU46936.1 | FJ848884_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10848 | 13838 |
| ACU46929.1 | FJ848884_p9 | unknown | phrog_1429 | virion structural protein | head and packaging | 1 | 6049 | 6363 |
| ACU46965.1 | FJ848884_p45 | unknown | phrog_9199 | unknown function | unknown function | -1 | 25786 | 25947 |
| ACU46962.1 | FJ848884_p42 | unknown | phrog_1632 | unknown function | unknown function | -1 | 24256 | 24543 |
| ACU46941.1 | FJ848884_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 16965 | 17318 |
| ACU46934.1 | FJ848884_p14 | unknown | phrog_1420 | virion structural protein | head and packaging | 1 | 10041 | 10316 |
| ACU46961.1 | FJ848884_p41 | unknown | phrog_1449 | unknown function | unknown function | -1 | 24033 | 24299 |
| ACU46940.1 | FJ848884_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16134 | 16943 |
| ACU46926.1 | FJ848884_p6 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 4055 | 4591 |
| ACU46970.1 | FJ848884_p50 | unknown | phrog_1652 | unknown function | unknown function | 1 | 27828 | 27995 |
| ACU46933.1 | FJ848884_p13 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9098 | 10003 |
| ACU46968.1 | FJ848884_p48 | unknown | phrog_1436 | unknown function | unknown function | 1 | 27220 | 27351 |
| ACU46957.1 | FJ848884_p37 | unknown | phrog_1295 | unknown function | unknown function | -1 | 22335 | 22547 |
| ACU46931.1 | FJ848884_p11 | unknown | phrog_1440 | virion structural protein | head and packaging | 1 | 6682 | 7047 |
| ACU46946.1 | FJ848884_p26 | unknown | phrog_1441 | unknown function | unknown function | -1 | 19460 | 19627 |
| ACU46954.1 | FJ848884_p34 | unknown | phrog_1919 | unknown function | unknown function | -1 | 21241 | 21555 |
| ACU46947.1 | FJ848884_p27 | unknown | phrog_1820 | unknown function | unknown function | -1 | 19627 | 19803 |
| ACU46937.1 | FJ848884_p17 | unknown | phrog_1424 | tail protein | tail | 1 | 13838 | 14734 |
| ACU46960.1 | FJ848884_p40 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23546 | 24046 |
| ACU46967.1 | FJ848884_p47 | unknown | phrog_5027 | unknown function | unknown function | 1 | 26988 | 27215 |
| ACU46955.1 | FJ848884_p35 | unknown | phrog_11716 | unknown function | unknown function | -1 | 21555 | 21746 |
| ACU46956.1 | FJ848884_p36 | unknown | phrog_1317 | unknown function | unknown function | -1 | 21826 | 22338 |
| ACU46944.1 | FJ848884_p24 | unknown | phrog_1430 | unknown function | unknown function | -1 | 18674 | 18940 |
| ACU46939.1 | FJ848884_p19 | unknown | phrog_1434 | unknown function | unknown function | 1 | 15851 | 16144 |
| ACU46932.1 | FJ848884_p12 | neck passage structure protein | phrog_2370 | neck passage structure | connector | 1 | 7104 | 9074 |
| ACU46927.1 | FJ848884_p7 | minor structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4584 | 5765 |
| ACU46943.1 | FJ848884_p23 | unknown | phrog_3775 | transglycosylase | other | -1 | 18464 | 18613 |
| ACU46938.1 | FJ848884_p18 | unknown | phrog_1432 | tail associated lysin | tail | 1 | 14734 | 15861 |
| ACU46921.1 | FJ848884_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 266 | 790 |
| ACU46958.1 | FJ848884_p38 | unknown | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 22563 | 22922 |
| ACU46952.1 | FJ848884_p32 | unknown | phrog_1825 | DNA methyltransferase | other | -1 | 20853 | 21095 |
| ACU46924.1 | FJ848884_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2641 | 2925 |
| ACU46966.1 | FJ848884_p46 | unknown | phrog_1656 | unknown function | unknown function | -1 | 26769 | 26957 |
| ACU46963.1 | FJ848884_p43 | unknown | phrog_1405 | unknown function | unknown function | -1 | 24596 | 24853 |