| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
FJ848885 |
Definition |
Lactococcus phage CB20, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
PVOG |
Length |
28625 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
35.02 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ACU46974.1 | FJ848885_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1010 | 2632 |
| ACU47009.1 | FJ848885_p38 | unknown | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 22545 | 22904 |
| ACU46972.1 | FJ848885_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 247 | 771 |
| ACU46973.1 | FJ848885_p2 | unknown | phrog_4501 | unknown function | unknown function | 1 | 768 | 998 |
| ACU46977.1 | FJ848885_p6 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 4036 | 4572 |
| ACU47007.1 | FJ848885_p36 | unknown | phrog_1317 | unknown function | unknown function | -1 | 21808 | 22320 |
| ACU46985.1 | FJ848885_p14 | unknown | phrog_1420 | virion structural protein | head and packaging | 1 | 10022 | 10297 |
| ACU46982.1 | FJ848885_p11 | unknown | phrog_1440 | virion structural protein | head and packaging | 1 | 6663 | 7028 |
| ACU47010.1 | FJ848885_p39 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 22908 | 23531 |
| ACU46999.1 | FJ848885_p28 | unknown | phrog_2530 | unknown function | unknown function | -1 | 19786 | 19977 |
| ACU47011.1 | FJ848885_p40 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23528 | 24028 |
| ACU47004.1 | FJ848885_p33 | unknown | phrog_4546 | unknown function | unknown function | -1 | 21078 | 21188 |
| ACU47000.1 | FJ848885_p29 | unknown | phrog_1509 | unknown function | unknown function | -1 | 20019 | 20276 |
| ACU46994.1 | FJ848885_p23 | unknown | phrog_3775 | transglycosylase | other | -1 | 18445 | 18594 |
| ACU46993.1 | FJ848885_p22 | endolysin | phrog_670 | endolysin | lysis | 1 | 17296 | 18000 |
| ACU47018.1 | FJ848885_p47 | unknown | phrog_5027 | unknown function | unknown function | 1 | 26970 | 27197 |
| ACU47003.1 | FJ848885_p32 | unknown | phrog_1825 | DNA methyltransferase | other | -1 | 20835 | 21077 |
| ACU46984.1 | FJ848885_p13 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9079 | 9984 |
| ACU47017.1 | FJ848885_p46 | unknown | phrog_1656 | unknown function | unknown function | -1 | 26751 | 26939 |
| ACU47006.1 | FJ848885_p35 | unknown | phrog_11716 | unknown function | unknown function | -1 | 21537 | 21728 |
| ACU47013.1 | FJ848885_p42 | unknown | phrog_1632 | unknown function | unknown function | -1 | 24238 | 24525 |
| ACU46997.1 | FJ848885_p26 | unknown | phrog_1441 | unknown function | unknown function | -1 | 19441 | 19608 |
| ACU47016.1 | FJ848885_p45 | unknown | phrog_9199 | unknown function | unknown function | -1 | 25768 | 25929 |
| ACU46983.1 | FJ848885_p12 | neck passage structure protein | phrog_2370 | neck passage structure | connector | 1 | 7085 | 9055 |
| ACU46998.1 | FJ848885_p27 | unknown | phrog_1820 | unknown function | unknown function | -1 | 19608 | 19784 |
| ACU46978.1 | FJ848885_p7 | minor structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4565 | 5746 |
| ACU46988.1 | FJ848885_p17 | unknown | phrog_1424 | tail protein | tail | 1 | 13819 | 14715 |
| ACU46992.1 | FJ848885_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 16946 | 17299 |
| ACU46996.1 | FJ848885_p25 | unknown | phrog_1415 | unknown function | unknown function | -1 | 19094 | 19441 |
| ACU46995.1 | FJ848885_p24 | unknown | phrog_1430 | unknown function | unknown function | -1 | 18655 | 18921 |
| ACU46991.1 | FJ848885_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16115 | 16924 |
| ACU46990.1 | FJ848885_p19 | unknown | phrog_1434 | unknown function | unknown function | 1 | 15832 | 16125 |
| ACU46986.1 | FJ848885_p15 | unknown | phrog_1421 | virion structural protein | head and packaging | 1 | 10317 | 10829 |
| ACU46979.1 | FJ848885_p8 | unknown | phrog_1428 | head-tail connector protein | connector | 1 | 5767 | 6030 |
| ACU47005.1 | FJ848885_p34 | unknown | phrog_1919 | unknown function | unknown function | -1 | 21223 | 21537 |
| ACU47001.1 | FJ848885_p30 | unknown | phrog_1225 | unknown function | unknown function | -1 | 20349 | 20657 |
| ACU46987.1 | FJ848885_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10829 | 13819 |
| ACU46981.1 | FJ848885_p10 | unknown | phrog_1484 | virion structural protein | head and packaging | 1 | 6334 | 6672 |
| ACU46976.1 | FJ848885_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2919 | 4055 |
| ACU47014.1 | FJ848885_p43 | unknown | phrog_1405 | unknown function | unknown function | -1 | 24578 | 24835 |
| ACU47008.1 | FJ848885_p37 | unknown | phrog_1295 | unknown function | unknown function | -1 | 22317 | 22529 |
| ACU47002.1 | FJ848885_p31 | unknown | phrog_1508 | unknown function | unknown function | -1 | 20657 | 20776 |
| ACU47020.1 | FJ848885_p49 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27330 | 27809 |
| ACU46975.1 | FJ848885_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2622 | 2906 |
| ACU47019.1 | FJ848885_p48 | unknown | phrog_1436 | unknown function | unknown function | 1 | 27202 | 27333 |
| ACU46980.1 | FJ848885_p9 | unknown | phrog_1429 | virion structural protein | head and packaging | 1 | 6030 | 6344 |
| ACU47022.1 | FJ848885_p51 | unknown | phrog_6252 | unknown function | unknown function | 1 | 28398 | 28538 |
| ACU47012.1 | FJ848885_p41 | unknown | phrog_1449 | unknown function | unknown function | -1 | 24015 | 24281 |
| ACU47015.1 | FJ848885_p44 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 24828 | 25724 |
| ACU46989.1 | FJ848885_p18 | unknown | phrog_1432 | tail associated lysin | tail | 1 | 14715 | 15842 |
| ACU47021.1 | FJ848885_p50 | unknown | phrog_1652 | unknown function | unknown function | 1 | 27810 | 27977 |