Genomic map of Lactococcus virus CB20 (FJ848885)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
FJ848885
Definition
Lactococcus phage CB20, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
PVOG
Length
28625
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
35.02
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ACU46974.1 FJ848885_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1010 2632
ACU47009.1 FJ848885_p38 unknown phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 22545 22904
ACU46972.1 FJ848885_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 247 771
ACU46973.1 FJ848885_p2 unknown phrog_4501 unknown function unknown function 1 768 998
ACU46977.1 FJ848885_p6 prohead protease phrog_80 head maturation protease head and packaging 1 4036 4572
ACU47007.1 FJ848885_p36 unknown phrog_1317 unknown function unknown function -1 21808 22320
ACU46985.1 FJ848885_p14 unknown phrog_1420 virion structural protein head and packaging 1 10022 10297
ACU46982.1 FJ848885_p11 unknown phrog_1440 virion structural protein head and packaging 1 6663 7028
ACU47010.1 FJ848885_p39 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 22908 23531
ACU46999.1 FJ848885_p28 unknown phrog_2530 unknown function unknown function -1 19786 19977
ACU47011.1 FJ848885_p40 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 23528 24028
ACU47004.1 FJ848885_p33 unknown phrog_4546 unknown function unknown function -1 21078 21188
ACU47000.1 FJ848885_p29 unknown phrog_1509 unknown function unknown function -1 20019 20276
ACU46994.1 FJ848885_p23 unknown phrog_3775 transglycosylase other -1 18445 18594
ACU46993.1 FJ848885_p22 endolysin phrog_670 endolysin lysis 1 17296 18000
ACU47018.1 FJ848885_p47 unknown phrog_5027 unknown function unknown function 1 26970 27197
ACU47003.1 FJ848885_p32 unknown phrog_1825 DNA methyltransferase other -1 20835 21077
ACU46984.1 FJ848885_p13 major capsid protein phrog_1433 major tail protein tail 1 9079 9984
ACU47017.1 FJ848885_p46 unknown phrog_1656 unknown function unknown function -1 26751 26939
ACU47006.1 FJ848885_p35 unknown phrog_11716 unknown function unknown function -1 21537 21728
ACU47013.1 FJ848885_p42 unknown phrog_1632 unknown function unknown function -1 24238 24525
ACU46997.1 FJ848885_p26 unknown phrog_1441 unknown function unknown function -1 19441 19608
ACU47016.1 FJ848885_p45 unknown phrog_9199 unknown function unknown function -1 25768 25929
ACU46983.1 FJ848885_p12 neck passage structure protein phrog_2370 neck passage structure connector 1 7085 9055
ACU46998.1 FJ848885_p27 unknown phrog_1820 unknown function unknown function -1 19608 19784
ACU46978.1 FJ848885_p7 minor structural protein phrog_1393 minor head protein head and packaging 1 4565 5746
ACU46988.1 FJ848885_p17 unknown phrog_1424 tail protein tail 1 13819 14715
ACU46992.1 FJ848885_p21 holin phrog_1379 unknown function unknown function 1 16946 17299
ACU46996.1 FJ848885_p25 unknown phrog_1415 unknown function unknown function -1 19094 19441
ACU46995.1 FJ848885_p24 unknown phrog_1430 unknown function unknown function -1 18655 18921
ACU46991.1 FJ848885_p20 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16115 16924
ACU46990.1 FJ848885_p19 unknown phrog_1434 unknown function unknown function 1 15832 16125
ACU46986.1 FJ848885_p15 unknown phrog_1421 virion structural protein head and packaging 1 10317 10829
ACU46979.1 FJ848885_p8 unknown phrog_1428 head-tail connector protein connector 1 5767 6030
ACU47005.1 FJ848885_p34 unknown phrog_1919 unknown function unknown function -1 21223 21537
ACU47001.1 FJ848885_p30 unknown phrog_1225 unknown function unknown function -1 20349 20657
ACU46987.1 FJ848885_p16 tape measure protein phrog_58 tail length tape measure protein tail 1 10829 13819
ACU46981.1 FJ848885_p10 unknown phrog_1484 virion structural protein head and packaging 1 6334 6672
ACU46976.1 FJ848885_p5 portal protein phrog_12 portal protein head and packaging 1 2919 4055
ACU47014.1 FJ848885_p43 unknown phrog_1405 unknown function unknown function -1 24578 24835
ACU47008.1 FJ848885_p37 unknown phrog_1295 unknown function unknown function -1 22317 22529
ACU47002.1 FJ848885_p31 unknown phrog_1508 unknown function unknown function -1 20657 20776
ACU47020.1 FJ848885_p49 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 27330 27809
ACU46975.1 FJ848885_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2622 2906
ACU47019.1 FJ848885_p48 unknown phrog_1436 unknown function unknown function 1 27202 27333
ACU46980.1 FJ848885_p9 unknown phrog_1429 virion structural protein head and packaging 1 6030 6344
ACU47022.1 FJ848885_p51 unknown phrog_6252 unknown function unknown function 1 28398 28538
ACU47012.1 FJ848885_p41 unknown phrog_1449 unknown function unknown function -1 24015 24281
ACU47015.1 FJ848885_p44 DNA polymerase subunit phrog_1284 unknown function unknown function -1 24828 25724
ACU46989.1 FJ848885_p18 unknown phrog_1432 tail associated lysin tail 1 14715 15842
ACU47021.1 FJ848885_p50 unknown phrog_1652 unknown function unknown function 1 27810 27977