Genomic map of Escherichia phage RCS47 (FO818745)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
FO818745
Definition
Escherichia phage RCS47, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Punavirus; Escherichia virus RCS47.
DB of origin
PVOG
Length
115154
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
124
%GC
49.35
Number of singletons
3
Number of paralogs
12

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
CDN90849.1 FO818745_p109 morphogenetic protein phrog_60 unknown function unknown function 1 96013 96678
CDN90764.1 FO818745_p24 RecF/RecN/SMC N-terminal domain protein phrog_4747 unknown function unknown function 1 22709 23854
CDN90762.1 FO818745_p22 Beta-lactamase SHV-2 phrog_14881 unknown function unknown function -1 21261 22121
CDN90744.1 FO818745_p4 RecA-dependent nuclease phrog_2321 Ref-like RecA filament endonuclease DNA, RNA and nucleotide metabolism 1 2076 2636
CDN90751.1 FO818745_p11 Lysis determinant LydD, holin phrog_21930 holin lysis -1 13835 14089
CDN90820.1 FO818745_p80 conserved protein of unknown function Upl phrog_14500 unknown function unknown function -1 76908 77099
CDN90783.1 FO818745_p43 Tail fiber assembly protein phrog_136 tail fiber assembly protein tail -1 39056 39589
CDN90771.1 FO818745_p31 conserved protein of unknown function, DdrB phrog_2299 unknown function unknown function -1 28143 31130
CDN90821.1 FO818745_p81 serine protease phrog_200 lipoprotein other 1 77509 78336
CDN90812.1 FO818745_p72 membrane lipoprotein precursor Mlp phrog_15803 lipoprotein other -1 69191 69322
CDN90858.1 FO818745_p118 Terminase A protein PacA phrog_1711 terminase head and packaging 1 100634 101827
CDN90818.1 FO818745_p78 DNA methyltransferase phrog_116 DNA methyltransferase other 1 72249 75536
CDN90836.1 FO818745_p96 morphogenic function protein PmgQ phrog_1962 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 88879 89580
CDN90763.1 FO818745_p23 K+ transporting ATPase, KdpC subunit singleton unknown function unknown function 1 22419 22679
CDN90799.1 FO818745_p59 Replication protein repL phrog_2418 unknown function unknown function 1 55260 56105
CDN90847.1 FO818745_p107 hypothetical protein phrog_1258 unknown function unknown function 1 95342 95635
CDN90785.1 FO818745_p45 Tail fiber protein R phrog_2032 tail fiber assembly protein tail -1 42531 42965
CDN90790.1 FO818745_p50 PmgB phrog_1854 PmgB-like head morphogenesis head and packaging -1 49170 50051
CDN90786.1 FO818745_p46 tail tube structural protein gp16 phrog_2015 tail tube protein tail -1 43044 43880
CDN90848.1 FO818745_p108 hypothetical protein phrog_2638 unknown function unknown function 1 95642 96016
CDN90838.1 FO818745_p98 morphogenic protein PmgS phrog_1660 PmgS-like head morphogenesis head and packaging 1 89882 91144
CDN90832.1 FO818745_p92 morphogenetic protein PmgN phrog_2350 unknown function unknown function 1 86925 87080
CDN90797.1 FO818745_p57 antirepressor protein Ant2 phrog_63 anti-repressor Ant transcription regulation 1 53481 54266
CDN90809.1 FO818745_p69 hypothetical protein phrog_2876 unknown function unknown function -1 66466 67275
CDN90743.1 FO818745_p3 lysogeny establishment protein phrog_1968 unknown function unknown function 1 1518 1829
CDN90759.1 FO818745_p19 conserved protein of unknown function YgbK phrog_19536 unknown function unknown function -1 18039 19304
CDN90865.1 FO818745_p125 transposase InsH, IS5D, IS5 family phrog_3598 transposase integration and excision 1 106396 107376
CDN90834.1 FO818745_p94 morphogenetic protein PmgP phrog_2111 unknown function unknown function 1 87582 88208
CDN90787.1 FO818745_p47 Baseplate structural protein BplA phrog_1369 baseplate protein tail -1 43880 45313
CDN90833.1 FO818745_p93 morphogenic function protein PmgO phrog_4603 alpha-2;3-sialyltransferase other 1 87022 87684
CDN90830.1 FO818745_p90 morphogenetic protein PmgL phrog_54 DksA-like zinc-finger protein other 1 86032 86277
CDN90760.1 FO818745_p20 dehydrogenase YgbJ phrog_1319 dehydrogenase other -1 19316 20218
CDN90810.1 FO818745_p70 replication protein RepA phrog_775 replication helicase DNA, RNA and nucleotide metabolism -1 67568 68452
CDN90827.1 FO818745_p87 tail stability protein Gp7 phrog_1906 tail protein tail -1 83549 84277
CDN90788.1 FO818745_p48 PmgA phrog_1896 unknown function unknown function -1 45310 45666
CDN90766.1 FO818745_p26 transposase IS26 phrog_157 transposase integration and excision 1 24827 25531
CDN90823.1 FO818745_p83 glycosyltransferase, Dbn phrog_2518 unknown function unknown function 1 80089 81087
CDN90831.1 FO818745_p91 morphogenetic protein PmgM phrog_2363 unknown function unknown function 1 86280 86858
CDN90824.1 FO818745_p84 base plate protein Gp5 phrog_430 baseplate hub subunit and tail lysozyme tail -1 81134 81766
CDN90803.1 FO818745_p63 morphogenetic protein PmgG phrog_1114 PmgG-like head morphogenesis head and packaging -1 59060 59641
CDN90839.1 FO818745_p99 P1 acid phosphatase Pap phrog_415 polynucleotide kinase other 1 91217 91723
CDN90808.1 FO818745_p68 partition protein parA phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 65101 66297
CDN90816.1 FO818745_p76 conserved protein of unknown function Uhr phrog_2213 nucleoside triphosphate pyrophosphohydrolase other 1 71070 71354
CDN90784.1 FO818745_p44 Tail fibrer protein GpS phrog_454 tail fiber protein tail -1 39592 42519
CDN90781.1 FO818745_p41 Tail fiber protein Sc phrog_454 tail fiber protein tail 1 37195 38496
CDN90772.1 FO818745_p32 transposase IS605 phrog_506 transposase integration and excision 1 31230 32438
CDN90795.1 FO818745_p55 cell division repressor Icd phrog_1426 unknown function unknown function 1 53014 53235
CDN90802.1 FO818745_p62 baseplate structural protein, BplB phrog_1120 tail tube protein tail -1 58539 59048
CDN90747.1 FO818745_p7 protein Ulx phrog_1629 Ulx-like anti-restriction moron, auxiliary metabolic gene and host takeover -1 3752 4192
CDN90851.1 FO818745_p111 DNA polymerase III subunit theta phrog_1105 DNA polymerase III theta subunit DNA, RNA and nucleotide metabolism 1 97314 97565
CDN90756.1 FO818745_p16 transposase IS26 phrog_157 transposase integration and excision 1 16010 16714
CDN90814.1 FO818745_p74 conserved protein of unknown function UpfB phrog_1559 unknown function unknown function -1 69819 70664
CDN90804.1 FO818745_p64 tail tube protein Gp21 phrog_1053 unknown function unknown function -1 59677 60492
CDN90811.1 FO818745_p71 conserved protein of unknown function UpfA phrog_1453 unknown function unknown function -1 68787 69179
CDN90794.1 FO818745_p54 outer membrane lipoprotein phrog_1277 DNA methyltransferase other -1 51880 52392
CDN90844.1 FO818745_p104 hypothetical protein phrog_60 unknown function unknown function 1 93923 94780
CDN90796.1 FO818745_p56 Antirepressor protein Ant1 phrog_63 anti-repressor Ant transcription regulation 1 53232 54266
CDN90773.1 FO818745_p33 conserved protein of unknown function DdrA phrog_1855 DdrA-like anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 32478 32843
CDN90742.1 FO818745_p2 Recombinase phrog_1 integrase integration and excision 1 436 1467
CDN90745.1 FO818745_p5 Maturation control protein phrog_1837 unknown function unknown function 1 2826 3467
CDN90828.1 FO818745_p88 tail stability protein Gp25 phrog_1722 tail protein tail -1 84281 85498
CDN90850.1 FO818745_p110 hypothetical protein phrog_2594 unknown function unknown function -1 96931 97281
CDN90863.1 FO818745_p123 immunity C function protein ImcB phrog_35478 unknown function unknown function -1 106174 106269
CDN90853.1 FO818745_p113 Antitoxin Phd phrog_375 Phd-like antitoxin moron, auxiliary metabolic gene and host takeover 1 98151 98372
CDN90857.1 FO818745_p117 Late promoter-activating protein Lpa phrog_1704 Lpa-like transcriptional activator transcription regulation 1 100096 100548
CDN90800.1 FO818745_p60 Transposase ISEc46, IS605 family phrog_506 transposase integration and excision 1 56263 57432
CDN90777.1 FO818745_p37 lysis determining protein LydA phrog_1527 holin lysis -1 35790 36119
CDN90817.1 FO818745_p77 Recombination-associated protein RdgC phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 71347 72252
CDN90861.1 FO818745_p121 repressor protein C1 phrog_1678 unknown function unknown function -1 105037 105888
CDN90815.1 FO818745_p75 conserved protein of unknown function UpfC (PAAR motif) phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover -1 70616 70900
CDN90769.1 FO818745_p29 ISSod13 family transposase phrog_157 transposase integration and excision -1 26665 27705
CDN90792.1 FO818745_p52 PmgC phrog_1851 PmgC-like head morphogenesis head and packaging -1 50690 51256
CDN90835.1 FO818745_p95 Serine/threonine-protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other 1 88190 88882
CDN90855.1 FO818745_p115 conserved protein of unknown function PdcA phrog_3345 unknown function unknown function 1 98736 98936
CDN90776.1 FO818745_p36 lysis determining protein LydB phrog_1898 lysis determining protein lysis -1 35350 35793
CDN90854.1 FO818745_p114 Toxin Doc phrog_577 Doc-like toxin moron, auxiliary metabolic gene and host takeover 1 98372 98752
CDN90746.1 FO818745_p6 Modulator protein phrog_2160 unknown function unknown function -1 3507 3755
CDN90749.1 FO818745_p9 portal protein Prt phrog_1497 portal protein head and packaging 1 11069 12778
CDN90798.1 FO818745_p58 Protein kilA phrog_63 anti-repressor Ant transcription regulation 1 54430 55230
CDN90801.1 FO818745_p61 hypothetical protein phrog_7522 unknown function unknown function -1 57771 58367
CDN90837.1 FO818745_p97 morphogenic function protein PmgR phrog_3177 unknown function unknown function 1 89662 89880
CDN90846.1 FO818745_p106 RNA-binding protein phrog_625 unknown function unknown function 1 95037 95318
CDN90845.1 FO818745_p105 hypothetical protein phrog_2814 unknown function unknown function 1 94777 95037
CDN90852.1 FO818745_p112 DNA repair protein HumD phrog_811 UmuD-like protein DNA, RNA and nucleotide metabolism 1 97689 98078
CDN90843.1 FO818745_p103 hypothetical protein phrog_926 unknown function unknown function 1 93717 93926
CDN90778.1 FO818745_p38 lysis determinant LydC phrog_1527 holin lysis -1 36180 36464
CDN90761.1 FO818745_p21 DEOR transcriptional regulator YgbI phrog_14147 transcriptional regulator transcription regulation 1 20479 21240
CDN90807.1 FO818745_p67 partition protein ParB phrog_1146 ParB-like partition protein DNA, RNA and nucleotide metabolism -1 64083 65084
CDN90825.1 FO818745_p85 tail length protein Gp6 phrog_1390 tail protein tail -1 81759 82775
CDN90793.1 FO818745_p53 conserved membrane protein of unknown function phrog_1094 unknown function unknown function -1 51337 51876
CDN90775.1 FO818745_p35 conserved protein of unknown function Hdf phrog_1620 Hdf-like antirestriction moron, auxiliary metabolic gene and host takeover -1 34761 35372
CDN90789.1 FO818745_p49 Transglycosylase SLT domain protein phrog_2533 unknown function unknown function -1 45666 49088
CDN90768.1 FO818745_p28 conserved protein of unknown function, IsaA phrog_2326 unknown function unknown function 1 25823 26605
CDN90856.1 FO818745_p116 conserved protein of unknown function PdcB phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 98964 100007
CDN90860.1 FO818745_p120 Antirepressor protein phrog_63 anti-repressor Ant transcription regulation 1 103889 105004
CDN90867.1 FO818745_p127 Dimethyl sulfoxide reductase DmsA phrog_7800 dimethyl sulfoxide reductase DmsA moron, auxiliary metabolic gene and host takeover 1 108507 110942
CDN90862.1 FO818745_p122 C1 inactivator protein Coi phrog_2079 unknown function unknown function -1 105999 106208
CDN90805.1 FO818745_p65 tail sheath protein Gp22 phrog_1036 tail sheath tail -1 60502 62091
CDN90842.1 FO818745_p102 hypothetical protein phrog_1380 unknown function unknown function 1 93354 93530
CDN90774.1 FO818745_p34 DarA phrog_1926 released from the phage upon host infection other -1 32840 34759
CDN90868.1 FO818745_p128 Anaerobic dimethyl sulfoxide reductase subunit B phrog_16249 ferredoxin moron, auxiliary metabolic gene and host takeover 1 110956 111582
CDN90869.1 FO818745_p129 DMSO reductase anchor subunit C phrog_19633 unknown function unknown function 1 111575 112351
CDN90870.1 FO818745_p130 Cytoplasmic chaperone, TorD family singleton unknown function unknown function 1 112406 113002
CDN90841.1 FO818745_p101 hypothetical protein phrog_250 unknown function unknown function 1 92492 93181
CDN90752.1 FO818745_p12 Lysozyme phrog_7 endolysin lysis -1 14082 14681
CDN90791.1 FO818745_p51 major tail tube protein TubB phrog_1842 tail tube protein tail -1 50066 50677
CDN90782.1 FO818745_p42 Tail fiber assembly protein GpU phrog_136 tail fiber assembly protein tail 1 38497 39027
CDN90819.1 FO818745_p79 lipoprotein Plp singleton unknown function unknown function -1 76488 76907
CDN90859.1 FO818745_p119 terminase B protein PacB phrog_2 terminase large subunit head and packaging 1 101827 103311
CDN90840.1 FO818745_p100 hypothetical protein phrog_874 unknown function unknown function 1 91918 92505
CDN90822.1 FO818745_p82 Replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 78725 80089
CDN90741.1 FO818745_p1 Cre-associated protein phrog_804 unknown function unknown function 1 207 428
CDN90748.1 FO818745_p8 DNA adenine methyltransferase and helicase, darB phrog_1685 unknown function unknown function -1 4226 10993
CDN90806.1 FO818745_p66 major head protein Gp23 phrog_1014 unknown function unknown function -1 62152 63858
CDN90826.1 FO818745_p86 baseplate protein Gp24 phrog_1767 baseplate protein tail -1 82777 83562
CDN90758.1 FO818745_p18 aldolase class 2 protein phrog_13212 unknown function unknown function -1 17426 18046
CDN90753.1 FO818745_p13 Single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 14809 15297
CDN90750.1 FO818745_p10 head processing protein Pro phrog_1801 tail fiber protein tail 1 12771 13790
CDN90872.1 FO818745_p132 transposase InsH, IS5D, IS5 family phrog_3598 transposase integration and excision 1 113744 114724
CDN90813.1 FO818745_p73 conserved protein of unknown function PpfA phrog_89 Rz-like spanin lysis -1 69357 69779
CDN90770.1 FO818745_p30 repressor protein Hxr phrog_2292 unknown function unknown function -1 27842 28153
CDN90866.1 FO818745_p126 transposase IS1 phrog_720 transposase integration and excision -1 107491 108189
CDN90829.1 FO818745_p89 base plate protein Gp26 phrog_1269 baseplate wedge subunit tail -1 85508 85885
CDN90871.1 FO818745_p131 ferredoxin phrog_16249 ferredoxin moron, auxiliary metabolic gene and host takeover 1 112999 113529