| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
FO818745 |
Definition |
Escherichia phage RCS47, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Punavirus; Escherichia virus RCS47. |
DB of origin |
PVOG |
Length |
115154 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
124 |
%GC |
49.35 |
Number of singletons |
3 |
Number of paralogs |
12 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| CDN90849.1 | FO818745_p109 | morphogenetic protein | phrog_60 | unknown function | unknown function | 1 | 96013 | 96678 |
| CDN90764.1 | FO818745_p24 | RecF/RecN/SMC N-terminal domain protein | phrog_4747 | unknown function | unknown function | 1 | 22709 | 23854 |
| CDN90762.1 | FO818745_p22 | Beta-lactamase SHV-2 | phrog_14881 | unknown function | unknown function | -1 | 21261 | 22121 |
| CDN90744.1 | FO818745_p4 | RecA-dependent nuclease | phrog_2321 | Ref-like RecA filament endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2076 | 2636 |
| CDN90751.1 | FO818745_p11 | Lysis determinant LydD, holin | phrog_21930 | holin | lysis | -1 | 13835 | 14089 |
| CDN90820.1 | FO818745_p80 | conserved protein of unknown function Upl | phrog_14500 | unknown function | unknown function | -1 | 76908 | 77099 |
| CDN90783.1 | FO818745_p43 | Tail fiber assembly protein | phrog_136 | tail fiber assembly protein | tail | -1 | 39056 | 39589 |
| CDN90771.1 | FO818745_p31 | conserved protein of unknown function, DdrB | phrog_2299 | unknown function | unknown function | -1 | 28143 | 31130 |
| CDN90821.1 | FO818745_p81 | serine protease | phrog_200 | lipoprotein | other | 1 | 77509 | 78336 |
| CDN90812.1 | FO818745_p72 | membrane lipoprotein precursor Mlp | phrog_15803 | lipoprotein | other | -1 | 69191 | 69322 |
| CDN90858.1 | FO818745_p118 | Terminase A protein PacA | phrog_1711 | terminase | head and packaging | 1 | 100634 | 101827 |
| CDN90818.1 | FO818745_p78 | DNA methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 72249 | 75536 |
| CDN90836.1 | FO818745_p96 | morphogenic function protein PmgQ | phrog_1962 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 88879 | 89580 |
| CDN90763.1 | FO818745_p23 | K+ transporting ATPase, KdpC subunit | singleton | unknown function | unknown function | 1 | 22419 | 22679 |
| CDN90799.1 | FO818745_p59 | Replication protein repL | phrog_2418 | unknown function | unknown function | 1 | 55260 | 56105 |
| CDN90847.1 | FO818745_p107 | hypothetical protein | phrog_1258 | unknown function | unknown function | 1 | 95342 | 95635 |
| CDN90785.1 | FO818745_p45 | Tail fiber protein R | phrog_2032 | tail fiber assembly protein | tail | -1 | 42531 | 42965 |
| CDN90790.1 | FO818745_p50 | PmgB | phrog_1854 | PmgB-like head morphogenesis | head and packaging | -1 | 49170 | 50051 |
| CDN90786.1 | FO818745_p46 | tail tube structural protein gp16 | phrog_2015 | tail tube protein | tail | -1 | 43044 | 43880 |
| CDN90848.1 | FO818745_p108 | hypothetical protein | phrog_2638 | unknown function | unknown function | 1 | 95642 | 96016 |
| CDN90838.1 | FO818745_p98 | morphogenic protein PmgS | phrog_1660 | PmgS-like head morphogenesis | head and packaging | 1 | 89882 | 91144 |
| CDN90832.1 | FO818745_p92 | morphogenetic protein PmgN | phrog_2350 | unknown function | unknown function | 1 | 86925 | 87080 |
| CDN90797.1 | FO818745_p57 | antirepressor protein Ant2 | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 53481 | 54266 |
| CDN90809.1 | FO818745_p69 | hypothetical protein | phrog_2876 | unknown function | unknown function | -1 | 66466 | 67275 |
| CDN90743.1 | FO818745_p3 | lysogeny establishment protein | phrog_1968 | unknown function | unknown function | 1 | 1518 | 1829 |
| CDN90759.1 | FO818745_p19 | conserved protein of unknown function YgbK | phrog_19536 | unknown function | unknown function | -1 | 18039 | 19304 |
| CDN90865.1 | FO818745_p125 | transposase InsH, IS5D, IS5 family | phrog_3598 | transposase | integration and excision | 1 | 106396 | 107376 |
| CDN90834.1 | FO818745_p94 | morphogenetic protein PmgP | phrog_2111 | unknown function | unknown function | 1 | 87582 | 88208 |
| CDN90787.1 | FO818745_p47 | Baseplate structural protein BplA | phrog_1369 | baseplate protein | tail | -1 | 43880 | 45313 |
| CDN90833.1 | FO818745_p93 | morphogenic function protein PmgO | phrog_4603 | alpha-2;3-sialyltransferase | other | 1 | 87022 | 87684 |
| CDN90830.1 | FO818745_p90 | morphogenetic protein PmgL | phrog_54 | DksA-like zinc-finger protein | other | 1 | 86032 | 86277 |
| CDN90760.1 | FO818745_p20 | dehydrogenase YgbJ | phrog_1319 | dehydrogenase | other | -1 | 19316 | 20218 |
| CDN90810.1 | FO818745_p70 | replication protein RepA | phrog_775 | replication helicase | DNA, RNA and nucleotide metabolism | -1 | 67568 | 68452 |
| CDN90827.1 | FO818745_p87 | tail stability protein Gp7 | phrog_1906 | tail protein | tail | -1 | 83549 | 84277 |
| CDN90788.1 | FO818745_p48 | PmgA | phrog_1896 | unknown function | unknown function | -1 | 45310 | 45666 |
| CDN90766.1 | FO818745_p26 | transposase IS26 | phrog_157 | transposase | integration and excision | 1 | 24827 | 25531 |
| CDN90823.1 | FO818745_p83 | glycosyltransferase, Dbn | phrog_2518 | unknown function | unknown function | 1 | 80089 | 81087 |
| CDN90831.1 | FO818745_p91 | morphogenetic protein PmgM | phrog_2363 | unknown function | unknown function | 1 | 86280 | 86858 |
| CDN90824.1 | FO818745_p84 | base plate protein Gp5 | phrog_430 | baseplate hub subunit and tail lysozyme | tail | -1 | 81134 | 81766 |
| CDN90803.1 | FO818745_p63 | morphogenetic protein PmgG | phrog_1114 | PmgG-like head morphogenesis | head and packaging | -1 | 59060 | 59641 |
| CDN90839.1 | FO818745_p99 | P1 acid phosphatase Pap | phrog_415 | polynucleotide kinase | other | 1 | 91217 | 91723 |
| CDN90808.1 | FO818745_p68 | partition protein parA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 65101 | 66297 |
| CDN90816.1 | FO818745_p76 | conserved protein of unknown function Uhr | phrog_2213 | nucleoside triphosphate pyrophosphohydrolase | other | 1 | 71070 | 71354 |
| CDN90784.1 | FO818745_p44 | Tail fibrer protein GpS | phrog_454 | tail fiber protein | tail | -1 | 39592 | 42519 |
| CDN90781.1 | FO818745_p41 | Tail fiber protein Sc | phrog_454 | tail fiber protein | tail | 1 | 37195 | 38496 |
| CDN90772.1 | FO818745_p32 | transposase IS605 | phrog_506 | transposase | integration and excision | 1 | 31230 | 32438 |
| CDN90795.1 | FO818745_p55 | cell division repressor Icd | phrog_1426 | unknown function | unknown function | 1 | 53014 | 53235 |
| CDN90802.1 | FO818745_p62 | baseplate structural protein, BplB | phrog_1120 | tail tube protein | tail | -1 | 58539 | 59048 |
| CDN90747.1 | FO818745_p7 | protein Ulx | phrog_1629 | Ulx-like anti-restriction | moron, auxiliary metabolic gene and host takeover | -1 | 3752 | 4192 |
| CDN90851.1 | FO818745_p111 | DNA polymerase III subunit theta | phrog_1105 | DNA polymerase III theta subunit | DNA, RNA and nucleotide metabolism | 1 | 97314 | 97565 |
| CDN90756.1 | FO818745_p16 | transposase IS26 | phrog_157 | transposase | integration and excision | 1 | 16010 | 16714 |
| CDN90814.1 | FO818745_p74 | conserved protein of unknown function UpfB | phrog_1559 | unknown function | unknown function | -1 | 69819 | 70664 |
| CDN90804.1 | FO818745_p64 | tail tube protein Gp21 | phrog_1053 | unknown function | unknown function | -1 | 59677 | 60492 |
| CDN90811.1 | FO818745_p71 | conserved protein of unknown function UpfA | phrog_1453 | unknown function | unknown function | -1 | 68787 | 69179 |
| CDN90794.1 | FO818745_p54 | outer membrane lipoprotein | phrog_1277 | DNA methyltransferase | other | -1 | 51880 | 52392 |
| CDN90844.1 | FO818745_p104 | hypothetical protein | phrog_60 | unknown function | unknown function | 1 | 93923 | 94780 |
| CDN90796.1 | FO818745_p56 | Antirepressor protein Ant1 | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 53232 | 54266 |
| CDN90773.1 | FO818745_p33 | conserved protein of unknown function DdrA | phrog_1855 | DdrA-like anti-restriction protein | moron, auxiliary metabolic gene and host takeover | -1 | 32478 | 32843 |
| CDN90742.1 | FO818745_p2 | Recombinase | phrog_1 | integrase | integration and excision | 1 | 436 | 1467 |
| CDN90745.1 | FO818745_p5 | Maturation control protein | phrog_1837 | unknown function | unknown function | 1 | 2826 | 3467 |
| CDN90828.1 | FO818745_p88 | tail stability protein Gp25 | phrog_1722 | tail protein | tail | -1 | 84281 | 85498 |
| CDN90850.1 | FO818745_p110 | hypothetical protein | phrog_2594 | unknown function | unknown function | -1 | 96931 | 97281 |
| CDN90863.1 | FO818745_p123 | immunity C function protein ImcB | phrog_35478 | unknown function | unknown function | -1 | 106174 | 106269 |
| CDN90853.1 | FO818745_p113 | Antitoxin Phd | phrog_375 | Phd-like antitoxin | moron, auxiliary metabolic gene and host takeover | 1 | 98151 | 98372 |
| CDN90857.1 | FO818745_p117 | Late promoter-activating protein Lpa | phrog_1704 | Lpa-like transcriptional activator | transcription regulation | 1 | 100096 | 100548 |
| CDN90800.1 | FO818745_p60 | Transposase ISEc46, IS605 family | phrog_506 | transposase | integration and excision | 1 | 56263 | 57432 |
| CDN90777.1 | FO818745_p37 | lysis determining protein LydA | phrog_1527 | holin | lysis | -1 | 35790 | 36119 |
| CDN90817.1 | FO818745_p77 | Recombination-associated protein RdgC | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 71347 | 72252 |
| CDN90861.1 | FO818745_p121 | repressor protein C1 | phrog_1678 | unknown function | unknown function | -1 | 105037 | 105888 |
| CDN90815.1 | FO818745_p75 | conserved protein of unknown function UpfC (PAAR motif) | phrog_281 | PAAR motif of membran proteins | moron, auxiliary metabolic gene and host takeover | -1 | 70616 | 70900 |
| CDN90769.1 | FO818745_p29 | ISSod13 family transposase | phrog_157 | transposase | integration and excision | -1 | 26665 | 27705 |
| CDN90792.1 | FO818745_p52 | PmgC | phrog_1851 | PmgC-like head morphogenesis | head and packaging | -1 | 50690 | 51256 |
| CDN90835.1 | FO818745_p95 | Serine/threonine-protein phosphatase | phrog_246 | NinI-like serine-threonine phosphatase | other | 1 | 88190 | 88882 |
| CDN90855.1 | FO818745_p115 | conserved protein of unknown function PdcA | phrog_3345 | unknown function | unknown function | 1 | 98736 | 98936 |
| CDN90776.1 | FO818745_p36 | lysis determining protein LydB | phrog_1898 | lysis determining protein | lysis | -1 | 35350 | 35793 |
| CDN90854.1 | FO818745_p114 | Toxin Doc | phrog_577 | Doc-like toxin | moron, auxiliary metabolic gene and host takeover | 1 | 98372 | 98752 |
| CDN90746.1 | FO818745_p6 | Modulator protein | phrog_2160 | unknown function | unknown function | -1 | 3507 | 3755 |
| CDN90749.1 | FO818745_p9 | portal protein Prt | phrog_1497 | portal protein | head and packaging | 1 | 11069 | 12778 |
| CDN90798.1 | FO818745_p58 | Protein kilA | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 54430 | 55230 |
| CDN90801.1 | FO818745_p61 | hypothetical protein | phrog_7522 | unknown function | unknown function | -1 | 57771 | 58367 |
| CDN90837.1 | FO818745_p97 | morphogenic function protein PmgR | phrog_3177 | unknown function | unknown function | 1 | 89662 | 89880 |
| CDN90846.1 | FO818745_p106 | RNA-binding protein | phrog_625 | unknown function | unknown function | 1 | 95037 | 95318 |
| CDN90845.1 | FO818745_p105 | hypothetical protein | phrog_2814 | unknown function | unknown function | 1 | 94777 | 95037 |
| CDN90852.1 | FO818745_p112 | DNA repair protein HumD | phrog_811 | UmuD-like protein | DNA, RNA and nucleotide metabolism | 1 | 97689 | 98078 |
| CDN90843.1 | FO818745_p103 | hypothetical protein | phrog_926 | unknown function | unknown function | 1 | 93717 | 93926 |
| CDN90778.1 | FO818745_p38 | lysis determinant LydC | phrog_1527 | holin | lysis | -1 | 36180 | 36464 |
| CDN90761.1 | FO818745_p21 | DEOR transcriptional regulator YgbI | phrog_14147 | transcriptional regulator | transcription regulation | 1 | 20479 | 21240 |
| CDN90807.1 | FO818745_p67 | partition protein ParB | phrog_1146 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 64083 | 65084 |
| CDN90825.1 | FO818745_p85 | tail length protein Gp6 | phrog_1390 | tail protein | tail | -1 | 81759 | 82775 |
| CDN90793.1 | FO818745_p53 | conserved membrane protein of unknown function | phrog_1094 | unknown function | unknown function | -1 | 51337 | 51876 |
| CDN90775.1 | FO818745_p35 | conserved protein of unknown function Hdf | phrog_1620 | Hdf-like antirestriction | moron, auxiliary metabolic gene and host takeover | -1 | 34761 | 35372 |
| CDN90789.1 | FO818745_p49 | Transglycosylase SLT domain protein | phrog_2533 | unknown function | unknown function | -1 | 45666 | 49088 |
| CDN90768.1 | FO818745_p28 | conserved protein of unknown function, IsaA | phrog_2326 | unknown function | unknown function | 1 | 25823 | 26605 |
| CDN90856.1 | FO818745_p116 | conserved protein of unknown function PdcB | phrog_96 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 98964 | 100007 |
| CDN90860.1 | FO818745_p120 | Antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 103889 | 105004 |
| CDN90867.1 | FO818745_p127 | Dimethyl sulfoxide reductase DmsA | phrog_7800 | dimethyl sulfoxide reductase DmsA | moron, auxiliary metabolic gene and host takeover | 1 | 108507 | 110942 |
| CDN90862.1 | FO818745_p122 | C1 inactivator protein Coi | phrog_2079 | unknown function | unknown function | -1 | 105999 | 106208 |
| CDN90805.1 | FO818745_p65 | tail sheath protein Gp22 | phrog_1036 | tail sheath | tail | -1 | 60502 | 62091 |
| CDN90842.1 | FO818745_p102 | hypothetical protein | phrog_1380 | unknown function | unknown function | 1 | 93354 | 93530 |
| CDN90774.1 | FO818745_p34 | DarA | phrog_1926 | released from the phage upon host infection | other | -1 | 32840 | 34759 |
| CDN90868.1 | FO818745_p128 | Anaerobic dimethyl sulfoxide reductase subunit B | phrog_16249 | ferredoxin | moron, auxiliary metabolic gene and host takeover | 1 | 110956 | 111582 |
| CDN90869.1 | FO818745_p129 | DMSO reductase anchor subunit C | phrog_19633 | unknown function | unknown function | 1 | 111575 | 112351 |
| CDN90870.1 | FO818745_p130 | Cytoplasmic chaperone, TorD family | singleton | unknown function | unknown function | 1 | 112406 | 113002 |
| CDN90841.1 | FO818745_p101 | hypothetical protein | phrog_250 | unknown function | unknown function | 1 | 92492 | 93181 |
| CDN90752.1 | FO818745_p12 | Lysozyme | phrog_7 | endolysin | lysis | -1 | 14082 | 14681 |
| CDN90791.1 | FO818745_p51 | major tail tube protein TubB | phrog_1842 | tail tube protein | tail | -1 | 50066 | 50677 |
| CDN90782.1 | FO818745_p42 | Tail fiber assembly protein GpU | phrog_136 | tail fiber assembly protein | tail | 1 | 38497 | 39027 |
| CDN90819.1 | FO818745_p79 | lipoprotein Plp | singleton | unknown function | unknown function | -1 | 76488 | 76907 |
| CDN90859.1 | FO818745_p119 | terminase B protein PacB | phrog_2 | terminase large subunit | head and packaging | 1 | 101827 | 103311 |
| CDN90840.1 | FO818745_p100 | hypothetical protein | phrog_874 | unknown function | unknown function | 1 | 91918 | 92505 |
| CDN90822.1 | FO818745_p82 | Replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 78725 | 80089 |
| CDN90741.1 | FO818745_p1 | Cre-associated protein | phrog_804 | unknown function | unknown function | 1 | 207 | 428 |
| CDN90748.1 | FO818745_p8 | DNA adenine methyltransferase and helicase, darB | phrog_1685 | unknown function | unknown function | -1 | 4226 | 10993 |
| CDN90806.1 | FO818745_p66 | major head protein Gp23 | phrog_1014 | unknown function | unknown function | -1 | 62152 | 63858 |
| CDN90826.1 | FO818745_p86 | baseplate protein Gp24 | phrog_1767 | baseplate protein | tail | -1 | 82777 | 83562 |
| CDN90758.1 | FO818745_p18 | aldolase class 2 protein | phrog_13212 | unknown function | unknown function | -1 | 17426 | 18046 |
| CDN90753.1 | FO818745_p13 | Single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 14809 | 15297 |
| CDN90750.1 | FO818745_p10 | head processing protein Pro | phrog_1801 | tail fiber protein | tail | 1 | 12771 | 13790 |
| CDN90872.1 | FO818745_p132 | transposase InsH, IS5D, IS5 family | phrog_3598 | transposase | integration and excision | 1 | 113744 | 114724 |
| CDN90813.1 | FO818745_p73 | conserved protein of unknown function PpfA | phrog_89 | Rz-like spanin | lysis | -1 | 69357 | 69779 |
| CDN90770.1 | FO818745_p30 | repressor protein Hxr | phrog_2292 | unknown function | unknown function | -1 | 27842 | 28153 |
| CDN90866.1 | FO818745_p126 | transposase IS1 | phrog_720 | transposase | integration and excision | -1 | 107491 | 108189 |
| CDN90829.1 | FO818745_p89 | base plate protein Gp26 | phrog_1269 | baseplate wedge subunit | tail | -1 | 85508 | 85885 |
| CDN90871.1 | FO818745_p131 | ferredoxin | phrog_16249 | ferredoxin | moron, auxiliary metabolic gene and host takeover | 1 | 112999 | 113529 |