| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
GQ303265 |
Definition |
Mycobacterium phage Pumpkin, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus. |
DB of origin |
PVOG |
Length |
74491 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
143 |
%GC |
62.95 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ACU41993.1 | GQ303265_p59 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41086 | 41223 |
| ACU41952.1 | GQ303265_p18 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 9972 | 10376 |
| ACU42007.1 | GQ303265_p73 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 46792 | 47103 |
| ACU42030.1 | GQ303265_p96 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 56743 | 57564 |
| ACU42000.1 | GQ303265_p66 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43471 | 43704 |
| ACU41958.1 | GQ303265_p24 | tapemeasure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13411 | 18147 |
| ACU41962.1 | GQ303265_p28 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 22364 | 24760 |
| ACU41947.1 | GQ303265_p13 | capsid subunit | phrog_10 | major head protein | head and packaging | 1 | 6906 | 8399 |
| ACU42012.1 | GQ303265_p78 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48488 | 48721 |
| ACU42031.1 | GQ303265_p97 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57561 | 57821 |
| ACU42057.1 | GQ303265_p123 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 67588 | 67767 |
| ACU42009.1 | GQ303265_p75 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47573 | 47941 |
| ACU41988.1 | GQ303265_p54 | integrase | phrog_1 | integrase | integration and excision | 1 | 38229 | 39110 |
| ACU42023.1 | GQ303265_p89 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52895 | 53257 |
| ACU41969.1 | GQ303265_p35 | hypothetical protein | phrog_526 | holin | lysis | 1 | 31224 | 31607 |
| ACU41953.1 | GQ303265_p19 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 10403 | 11377 |
| ACU41948.1 | GQ303265_p14 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 8522 | 8701 |
| ACU42014.1 | GQ303265_p80 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49128 | 49445 |
| ACU41956.1 | GQ303265_p22 | hypothetical protein | phrog_5940 | tail assembly chaperone | tail | 1 | 12624 | 12905 |
| ACU41937.1 | GQ303265_p3 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 558 | 743 |
| ACU42034.1 | GQ303265_p100 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58465 | 58800 |
| ACU41980.1 | GQ303265_p46 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 35917 | 36090 |
| ACU41951.1 | GQ303265_p17 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 9614 | 9994 |
| ACU42056.1 | GQ303265_p122 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 67454 | 67591 |
| ACU42058.1 | GQ303265_p124 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 67767 | 67898 |
| ACU42008.1 | GQ303265_p74 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 47103 | 47573 |
| ACU42055.1 | GQ303265_p121 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 67257 | 67457 |
| ACU41997.1 | GQ303265_p63 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 42797 | 42985 |
| ACU42065.1 | GQ303265_p131 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 70286 | 70615 |
| ACU42059.1 | GQ303265_p125 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 67909 | 68043 |
| ACU41982.1 | GQ303265_p48 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36215 | 36382 |
| ACU42026.1 | GQ303265_p92 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 54652 | 55020 |
| ACU42019.1 | GQ303265_p85 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51899 | 52087 |
| ACU42068.1 | GQ303265_p134 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 71055 | 71291 |
| ACU42018.1 | GQ303265_p84 | DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50640 | 51902 |
| ACU42050.1 | GQ303265_p116 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 66086 | 66259 |
| ACU42073.1 | GQ303265_p139 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 72647 | 72931 |
| ACU42003.1 | GQ303265_p69 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44383 | 44712 |
| ACU41992.1 | GQ303265_p58 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 40991 | 41089 |
| ACU41981.1 | GQ303265_p47 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 36087 | 36215 |
| ACU42051.1 | GQ303265_p117 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 66252 | 66464 |
| ACU41961.1 | GQ303265_p27 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 21514 | 22347 |
| ACU42011.1 | GQ303265_p77 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48312 | 48491 |
| ACU42038.1 | GQ303265_p104 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60849 | 61205 |
| ACU41985.1 | GQ303265_p51 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36842 | 36988 |
| ACU41970.1 | GQ303265_p36 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31600 | 31938 |
| ACU41949.1 | GQ303265_p15 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 8701 | 9267 |
| ACU41935.1 | GQ303265_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |
| ACU42043.1 | GQ303265_p109 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62830 | 63093 |
| ACU41978.1 | GQ303265_p44 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 35094 | 35558 |
| ACU41942.1 | GQ303265_p8 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1925 | 2233 |
| ACU41964.1 | GQ303265_p30 | PPE protein | phrog_553 | minor tail protein | tail | 1 | 27598 | 28557 |
| ACU41960.1 | GQ303265_p26 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19910 | 21505 |
| ACU41999.1 | GQ303265_p65 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43356 | 43463 |
| ACU41972.1 | GQ303265_p38 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32789 | 33205 |
| ACU42015.1 | GQ303265_p81 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49435 | 49671 |
| ACU42025.1 | GQ303265_p91 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 53603 | 54550 |
| ACU41996.1 | GQ303265_p62 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42210 | 42488 |
| ACU42020.1 | GQ303265_p86 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 52084 | 52344 |
| ACU42045.1 | GQ303265_p111 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 63481 | 63960 |
| ACU42005.1 | GQ303265_p71 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45674 | 46084 |
| ACU42063.1 | GQ303265_p129 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 69448 | 69816 |
| ACU42048.1 | GQ303265_p114 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 65003 | 65965 |
| ACU42053.1 | GQ303265_p119 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 66696 | 67109 |
| ACU42052.1 | GQ303265_p118 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 66445 | 66699 |
| ACU41989.1 | GQ303265_p55 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39249 | 39488 |
| ACU42036.1 | GQ303265_p102 | SSB protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59517 | 59957 |
| ACU41994.1 | GQ303265_p60 | hypothetical protein | phrog_923 | unknown function | unknown function | 1 | 41220 | 42065 |
| ACU41975.1 | GQ303265_p41 | hypothetical protein | phrog_9947 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | -1 | 34284 | 34463 |
| ACU41963.1 | GQ303265_p29 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24757 | 27597 |
| ACU42002.1 | GQ303265_p68 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 44054 | 44386 |
| ACU42027.1 | GQ303265_p93 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54993 | 55115 |
| ACU42006.1 | GQ303265_p72 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46077 | 46799 |
| ACU42040.1 | GQ303265_p106 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61501 | 61812 |
| ACU41991.1 | GQ303265_p57 | hypothetical protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40334 | 40765 |
| ACU42004.1 | GQ303265_p70 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44709 | 45677 |
| ACU41940.1 | GQ303265_p6 | small terminase | phrog_83 | terminase small subunit | head and packaging | 1 | 1153 | 1614 |
| ACU41957.1 | GQ303265_p23 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 12895 | 13410 |
| ACU41941.1 | GQ303265_p7 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1686 | 1925 |
| ACU42066.1 | GQ303265_p132 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 70617 | 70934 |
| ACU42049.1 | GQ303265_p115 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 65962 | 66099 |
| ACU42074.1 | GQ303265_p140 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 72967 | 73326 |
| ACU41965.1 | GQ303265_p31 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28627 | 29055 |
| ACU42017.1 | GQ303265_p83 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50315 | 50647 |
| ACU41983.1 | GQ303265_p49 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36379 | 36549 |
| ACU41976.1 | GQ303265_p42 | Lsr2-like protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 34466 | 34852 |
| ACU41968.1 | GQ303265_p34 | lysin A | phrog_317 | endolysin | lysis | 1 | 29718 | 31220 |
| ACU41966.1 | GQ303265_p32 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29042 | 29227 |
| ACU42061.1 | GQ303265_p127 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 68683 | 69072 |
| ACU42047.1 | GQ303265_p113 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 64753 | 64995 |
| ACU41977.1 | GQ303265_p43 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34900 | 35097 |
| ACU42062.1 | GQ303265_p128 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 69191 | 69451 |
| ACU42044.1 | GQ303265_p110 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 63104 | 63478 |
| ACU41954.1 | GQ303265_p20 | hypothetical protein | phrog_5711 | head fiber protein | head and packaging | 1 | 11437 | 11910 |
| ACU41986.1 | GQ303265_p52 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 36988 | 37389 |
| ACU41950.1 | GQ303265_p16 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 9282 | 9617 |
| ACU41944.1 | GQ303265_p10 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 3960 | 4181 |
| ACU41979.1 | GQ303265_p45 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35555 | 35920 |
| ACU41938.1 | GQ303265_p4 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 740 | 1033 |
| ACU41946.1 | GQ303265_p12 | hypothetical protein | phrog_2753 | head maturation protease | head and packaging | 1 | 5727 | 6818 |
| ACU41974.1 | GQ303265_p40 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33619 | 34140 |
| ACU42064.1 | GQ303265_p130 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 69813 | 70271 |
| ACU41990.1 | GQ303265_p56 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39466 | 40239 |
| ACU42076.1 | GQ303265_p142 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 73699 | 73920 |
| ACU42060.1 | GQ303265_p126 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 68423 | 68686 |
| ACU42039.1 | GQ303265_p105 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61206 | 61496 |
| ACU42016.1 | GQ303265_p82 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49668 | 50318 |
| ACU42077.1 | GQ303265_p143 | hypothetical protein | phrog_8627 | unknown function | unknown function | 1 | 73965 | 74378 |
| ACU41967.1 | GQ303265_p33 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29360 | 29644 |
| ACU42042.1 | GQ303265_p108 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62537 | 62833 |
| ACU42010.1 | GQ303265_p76 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 47944 | 48312 |
| ACU41998.1 | GQ303265_p64 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43032 | 43337 |
| ACU42013.1 | GQ303265_p79 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 48718 | 49131 |
| ACU42029.1 | GQ303265_p95 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55381 | 56706 |
| ACU41971.1 | GQ303265_p37 | lysin B | phrog_102 | endolysin | lysis | 1 | 31935 | 32792 |
| ACU41939.1 | GQ303265_p5 | hypothetical protein | phrog_8426 | unknown function | unknown function | 1 | 1011 | 1160 |
| ACU41984.1 | GQ303265_p50 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36608 | 36823 |
| ACU42001.1 | GQ303265_p67 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43704 | 43865 |
| ACU41995.1 | GQ303265_p61 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42067 | 42213 |
| ACU41955.1 | GQ303265_p21 | hypothetical protein | phrog_621 | tail assembly chaperone | tail | 1 | 12031 | 12492 |
| ACU42075.1 | GQ303265_p141 | hypothetical protein | phrog_8080 | unknown function | unknown function | -1 | 73373 | 73591 |
| ACU42022.1 | GQ303265_p88 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52533 | 52898 |
| ACU42046.1 | GQ303265_p112 | polymerase II | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 63971 | 64756 |
| ACU41945.1 | GQ303265_p11 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4228 | 5724 |
| ACU41943.1 | GQ303265_p9 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2278 | 3948 |
| ACU42054.1 | GQ303265_p120 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 67106 | 67273 |
| ACU42033.1 | GQ303265_p99 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57993 | 58463 |
| ACU41936.1 | GQ303265_p2 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 349 | 561 |
| ACU42067.1 | GQ303265_p133 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 70940 | 71065 |
| ACU42071.1 | GQ303265_p137 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 72235 | 72408 |
| ACU41987.1 | GQ303265_p53 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37676 | 37978 |
| ACU42037.1 | GQ303265_p103 | Clp | phrog_94 | head maturation protease | head and packaging | 1 | 59992 | 60852 |
| ACU42035.1 | GQ303265_p101 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58797 | 59333 |
| ACU42070.1 | GQ303265_p136 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 71847 | 72230 |
| ACU42072.1 | GQ303265_p138 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 72405 | 72650 |
| ACU42028.1 | GQ303265_p94 | hypothetical protein | phrog_10857 | unknown function | unknown function | 1 | 55112 | 55384 |
| ACU42021.1 | GQ303265_p87 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52319 | 52540 |
| ACU42069.1 | GQ303265_p135 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 71307 | 71843 |
| ACU42032.1 | GQ303265_p98 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57838 | 57996 |
| ACU42041.1 | GQ303265_p107 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61865 | 62155 |
| ACU42024.1 | GQ303265_p90 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53254 | 53448 |
| ACU41973.1 | GQ303265_p39 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33212 | 33457 |
| ACU41959.1 | GQ303265_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18177 | 19838 |