Genomic map of Mycobacterium virus Pumpkin (GQ303265)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
GQ303265
Definition
Mycobacterium phage Pumpkin, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus.
DB of origin
PVOG
Length
74491
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
143
%GC
62.95
Number of singletons
0
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ACU41993.1 GQ303265_p59 hypothetical protein phrog_2852 unknown function unknown function 1 41086 41223
ACU41952.1 GQ303265_p18 hypothetical protein phrog_813 head-tail adaptor connector 1 9972 10376
ACU42007.1 GQ303265_p73 hypothetical protein phrog_2750 unknown function unknown function 1 46792 47103
ACU42030.1 GQ303265_p96 hypothetical protein phrog_1590 unknown function unknown function 1 56743 57564
ACU42000.1 GQ303265_p66 hypothetical protein phrog_2147 unknown function unknown function 1 43471 43704
ACU41958.1 GQ303265_p24 tapemeasure protein phrog_2723 tail length tape measure protein tail 1 13411 18147
ACU41962.1 GQ303265_p28 hypothetical protein phrog_346 minor tail protein tail 1 22364 24760
ACU41947.1 GQ303265_p13 capsid subunit phrog_10 major head protein head and packaging 1 6906 8399
ACU42012.1 GQ303265_p78 hypothetical protein phrog_2793 unknown function unknown function 1 48488 48721
ACU42031.1 GQ303265_p97 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 57561 57821
ACU42057.1 GQ303265_p123 hypothetical protein phrog_2925 unknown function unknown function 1 67588 67767
ACU42009.1 GQ303265_p75 hypothetical protein phrog_1389 unknown function unknown function 1 47573 47941
ACU41988.1 GQ303265_p54 integrase phrog_1 integrase integration and excision 1 38229 39110
ACU42023.1 GQ303265_p89 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 52895 53257
ACU41969.1 GQ303265_p35 hypothetical protein phrog_526 holin lysis 1 31224 31607
ACU41953.1 GQ303265_p19 major tail subunit phrog_476 major tail protein tail 1 10403 11377
ACU41948.1 GQ303265_p14 hypothetical protein phrog_2796 head-tail connector protein connector 1 8522 8701
ACU42014.1 GQ303265_p80 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 49128 49445
ACU41956.1 GQ303265_p22 hypothetical protein phrog_5940 tail assembly chaperone tail 1 12624 12905
ACU41937.1 GQ303265_p3 hypothetical protein phrog_2775 unknown function unknown function 1 558 743
ACU42034.1 GQ303265_p100 hypothetical protein phrog_2788 unknown function unknown function 1 58465 58800
ACU41980.1 GQ303265_p46 hypothetical protein phrog_1155 unknown function unknown function -1 35917 36090
ACU41951.1 GQ303265_p17 hypothetical protein phrog_2805 minor tail protein tail 1 9614 9994
ACU42056.1 GQ303265_p122 hypothetical protein phrog_2296 unknown function unknown function 1 67454 67591
ACU42058.1 GQ303265_p124 hypothetical protein phrog_2897 unknown function unknown function 1 67767 67898
ACU42008.1 GQ303265_p74 hypothetical protein phrog_2771 unknown function unknown function 1 47103 47573
ACU42055.1 GQ303265_p121 hypothetical protein phrog_2823 unknown function unknown function 1 67257 67457
ACU41997.1 GQ303265_p63 hypothetical protein phrog_4633 unknown function unknown function 1 42797 42985
ACU42065.1 GQ303265_p131 hypothetical protein phrog_1587 unknown function unknown function -1 70286 70615
ACU42059.1 GQ303265_p125 hypothetical protein phrog_3016 unknown function unknown function 1 67909 68043
ACU41982.1 GQ303265_p48 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 36215 36382
ACU42026.1 GQ303265_p92 hypothetical protein phrog_2495 unknown function unknown function 1 54652 55020
ACU42019.1 GQ303265_p85 hypothetical protein phrog_1091 unknown function unknown function 1 51899 52087
ACU42068.1 GQ303265_p134 hypothetical protein phrog_2287 unknown function unknown function -1 71055 71291
ACU42018.1 GQ303265_p84 DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 50640 51902
ACU42050.1 GQ303265_p116 hypothetical protein phrog_2755 unknown function unknown function 1 66086 66259
ACU42073.1 GQ303265_p139 hypothetical protein phrog_2795 unknown function unknown function -1 72647 72931
ACU42003.1 GQ303265_p69 hypothetical protein phrog_762 unknown function unknown function 1 44383 44712
ACU41992.1 GQ303265_p58 hypothetical protein phrog_3071 unknown function unknown function 1 40991 41089
ACU41981.1 GQ303265_p47 hypothetical protein phrog_4396 unknown function unknown function -1 36087 36215
ACU42051.1 GQ303265_p117 hypothetical protein phrog_2279 unknown function unknown function 1 66252 66464
ACU41961.1 GQ303265_p27 hypothetical protein phrog_732 minor tail protein tail 1 21514 22347
ACU42011.1 GQ303265_p77 hypothetical protein phrog_1622 unknown function unknown function 1 48312 48491
ACU42038.1 GQ303265_p104 hypothetical protein phrog_2785 unknown function unknown function 1 60849 61205
ACU41985.1 GQ303265_p51 hypothetical protein phrog_2815 unknown function unknown function -1 36842 36988
ACU41970.1 GQ303265_p36 hypothetical protein phrog_2424 unknown function unknown function 1 31600 31938
ACU41949.1 GQ303265_p15 hypothetical protein phrog_442 head-tail adaptor connector 1 8701 9267
ACU41935.1 GQ303265_p1 hypothetical protein phrog_3456 unknown function unknown function 1 34 270
ACU42043.1 GQ303265_p109 hypothetical protein phrog_1042 unknown function unknown function 1 62830 63093
ACU41978.1 GQ303265_p44 hypothetical protein phrog_647 unknown function unknown function -1 35094 35558
ACU41942.1 GQ303265_p8 hypothetical protein phrog_2202 unknown function unknown function -1 1925 2233
ACU41964.1 GQ303265_p30 PPE protein phrog_553 minor tail protein tail 1 27598 28557
ACU41960.1 GQ303265_p26 minor tail protein phrog_110 minor tail protein tail 1 19910 21505
ACU41999.1 GQ303265_p65 hypothetical protein phrog_3463 unknown function unknown function 1 43356 43463
ACU41972.1 GQ303265_p38 hypothetical protein phrog_726 unknown function unknown function 1 32789 33205
ACU42015.1 GQ303265_p81 hypothetical protein phrog_1673 unknown function unknown function 1 49435 49671
ACU42025.1 GQ303265_p91 Pnk phrog_505 polynucleotide kinase other 1 53603 54550
ACU41996.1 GQ303265_p62 hypothetical protein phrog_2800 unknown function unknown function 1 42210 42488
ACU42020.1 GQ303265_p86 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 52084 52344
ACU42045.1 GQ303265_p111 hypothetical protein phrog_2252 endolysin; inhibits RNA polymerase lysis 1 63481 63960
ACU42005.1 GQ303265_p71 hypothetical protein phrog_572 unknown function unknown function 1 45674 46084
ACU42063.1 GQ303265_p129 hypothetical protein phrog_3034 unknown function unknown function -1 69448 69816
ACU42048.1 GQ303265_p114 RecA phrog_97 UvsX-like recombinase other 1 65003 65965
ACU42053.1 GQ303265_p119 hypothetical protein phrog_2174 unknown function unknown function 1 66696 67109
ACU42052.1 GQ303265_p118 hypothetical protein phrog_3062 unknown function unknown function 1 66445 66699
ACU41989.1 GQ303265_p55 hypothetical protein phrog_2842 unknown function unknown function 1 39249 39488
ACU42036.1 GQ303265_p102 SSB protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 59517 59957
ACU41994.1 GQ303265_p60 hypothetical protein phrog_923 unknown function unknown function 1 41220 42065
ACU41975.1 GQ303265_p41 hypothetical protein phrog_9947 Lsr2-like DNA bridging protein DNA, RNA and nucleotide metabolism -1 34284 34463
ACU41963.1 GQ303265_p29 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 24757 27597
ACU42002.1 GQ303265_p68 hypothetical protein phrog_301 secreted protein other 1 44054 44386
ACU42027.1 GQ303265_p93 hypothetical protein phrog_2844 unknown function unknown function 1 54993 55115
ACU42006.1 GQ303265_p72 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 46077 46799
ACU42040.1 GQ303265_p106 hypothetical protein phrog_1969 unknown function unknown function 1 61501 61812
ACU41991.1 GQ303265_p57 hypothetical protein phrog_2745 transcriptional repressor transcription regulation -1 40334 40765
ACU42004.1 GQ303265_p70 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 44709 45677
ACU41940.1 GQ303265_p6 small terminase phrog_83 terminase small subunit head and packaging 1 1153 1614
ACU41957.1 GQ303265_p23 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism 1 12895 13410
ACU41941.1 GQ303265_p7 hypothetical protein phrog_4101 unknown function unknown function -1 1686 1925
ACU42066.1 GQ303265_p132 hypothetical protein phrog_4547 unknown function unknown function -1 70617 70934
ACU42049.1 GQ303265_p115 hypothetical protein phrog_2965 unknown function unknown function 1 65962 66099
ACU42074.1 GQ303265_p140 hypothetical protein phrog_2904 unknown function unknown function 1 72967 73326
ACU41965.1 GQ303265_p31 hypothetical protein phrog_644 unknown function unknown function 1 28627 29055
ACU42017.1 GQ303265_p83 hypothetical protein phrog_572 unknown function unknown function 1 50315 50647
ACU41983.1 GQ303265_p49 hypothetical protein phrog_2893 unknown function unknown function -1 36379 36549
ACU41976.1 GQ303265_p42 Lsr2-like protein phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 34466 34852
ACU41968.1 GQ303265_p34 lysin A phrog_317 endolysin lysis 1 29718 31220
ACU41966.1 GQ303265_p32 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 29042 29227
ACU42061.1 GQ303265_p127 hypothetical protein phrog_2579 ParB C-terminal domain DNA, RNA and nucleotide metabolism -1 68683 69072
ACU42047.1 GQ303265_p113 hypothetical protein phrog_1941 unknown function unknown function 1 64753 64995
ACU41977.1 GQ303265_p43 hypothetical protein phrog_3481 unknown function unknown function -1 34900 35097
ACU42062.1 GQ303265_p128 hypothetical protein phrog_2942 unknown function unknown function -1 69191 69451
ACU42044.1 GQ303265_p110 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 63104 63478
ACU41954.1 GQ303265_p20 hypothetical protein phrog_5711 head fiber protein head and packaging 1 11437 11910
ACU41986.1 GQ303265_p52 hypothetical protein phrog_2759 unknown function unknown function -1 36988 37389
ACU41950.1 GQ303265_p16 hypothetical protein phrog_1531 head closure connector 1 9282 9617
ACU41944.1 GQ303265_p10 hypothetical protein phrog_2845 unknown function unknown function 1 3960 4181
ACU41979.1 GQ303265_p45 hypothetical protein phrog_722 unknown function unknown function -1 35555 35920
ACU41938.1 GQ303265_p4 hypothetical protein phrog_3858 unknown function unknown function 1 740 1033
ACU41946.1 GQ303265_p12 hypothetical protein phrog_2753 head maturation protease head and packaging 1 5727 6818
ACU41974.1 GQ303265_p40 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism -1 33619 34140
ACU42064.1 GQ303265_p130 hypothetical protein phrog_1915 unknown function unknown function -1 69813 70271
ACU41990.1 GQ303265_p56 hypothetical protein phrog_950 unknown function unknown function -1 39466 40239
ACU42076.1 GQ303265_p142 hypothetical protein phrog_2762 unknown function unknown function 1 73699 73920
ACU42060.1 GQ303265_p126 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 68423 68686
ACU42039.1 GQ303265_p105 hypothetical protein phrog_2757 unknown function unknown function 1 61206 61496
ACU42016.1 GQ303265_p82 hypothetical protein phrog_1882 unknown function unknown function 1 49668 50318
ACU42077.1 GQ303265_p143 hypothetical protein phrog_8627 unknown function unknown function 1 73965 74378
ACU41967.1 GQ303265_p33 hypothetical protein phrog_411 unknown function unknown function 1 29360 29644
ACU42042.1 GQ303265_p108 hypothetical protein phrog_2846 unknown function unknown function 1 62537 62833
ACU42010.1 GQ303265_p76 hypothetical protein phrog_572 unknown function unknown function 1 47944 48312
ACU41998.1 GQ303265_p64 hypothetical protein phrog_2744 unknown function unknown function 1 43032 43337
ACU42013.1 GQ303265_p79 hypothetical protein phrog_289 GTP-binding domain other 1 48718 49131
ACU42029.1 GQ303265_p95 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 55381 56706
ACU41971.1 GQ303265_p37 lysin B phrog_102 endolysin lysis 1 31935 32792
ACU41939.1 GQ303265_p5 hypothetical protein phrog_8426 unknown function unknown function 1 1011 1160
ACU41984.1 GQ303265_p50 hypothetical protein phrog_2702 unknown function unknown function -1 36608 36823
ACU42001.1 GQ303265_p67 hypothetical protein phrog_2221 unknown function unknown function 1 43704 43865
ACU41995.1 GQ303265_p61 hypothetical protein phrog_2463 unknown function unknown function 1 42067 42213
ACU41955.1 GQ303265_p21 hypothetical protein phrog_621 tail assembly chaperone tail 1 12031 12492
ACU42075.1 GQ303265_p141 hypothetical protein phrog_8080 unknown function unknown function -1 73373 73591
ACU42022.1 GQ303265_p88 hypothetical protein phrog_3836 unknown function unknown function 1 52533 52898
ACU42046.1 GQ303265_p112 polymerase II phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 63971 64756
ACU41945.1 GQ303265_p11 portal protein phrog_12 portal protein head and packaging 1 4228 5724
ACU41943.1 GQ303265_p9 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2278 3948
ACU42054.1 GQ303265_p120 hypothetical protein phrog_2764 unknown function unknown function 1 67106 67273
ACU42033.1 GQ303265_p99 hypothetical protein phrog_889 unknown function unknown function 1 57993 58463
ACU41936.1 GQ303265_p2 hypothetical protein phrog_2829 unknown function unknown function 1 349 561
ACU42067.1 GQ303265_p133 hypothetical protein phrog_3730 unknown function unknown function -1 70940 71065
ACU42071.1 GQ303265_p137 hypothetical protein phrog_1438 unknown function unknown function -1 72235 72408
ACU41987.1 GQ303265_p53 hypothetical protein phrog_2847 unknown function unknown function -1 37676 37978
ACU42037.1 GQ303265_p103 Clp phrog_94 head maturation protease head and packaging 1 59992 60852
ACU42035.1 GQ303265_p101 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 58797 59333
ACU42070.1 GQ303265_p136 hypothetical protein phrog_3174 unknown function unknown function -1 71847 72230
ACU42072.1 GQ303265_p138 hypothetical protein phrog_2772 unknown function unknown function -1 72405 72650
ACU42028.1 GQ303265_p94 hypothetical protein phrog_10857 unknown function unknown function 1 55112 55384
ACU42021.1 GQ303265_p87 hypothetical protein phrog_2747 unknown function unknown function 1 52319 52540
ACU42069.1 GQ303265_p135 hypothetical protein phrog_2883 unknown function unknown function -1 71307 71843
ACU42032.1 GQ303265_p98 hypothetical protein phrog_2853 unknown function unknown function 1 57838 57996
ACU42041.1 GQ303265_p107 hypothetical protein phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61865 62155
ACU42024.1 GQ303265_p90 hypothetical protein phrog_2894 unknown function unknown function 1 53254 53448
ACU41973.1 GQ303265_p39 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 33212 33457
ACU41959.1 GQ303265_p25 minor tail protein phrog_106 minor tail protein tail 1 18177 19838