| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
HE956707 |
Definition |
Yersinia phage phiR8-01 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Pienvirus; Yersinia virus R8-01. |
DB of origin |
PVOG |
Length |
42085 |
Host Name |
Yersinia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
51.84 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| SGA03417.1 | HE956707_p43 | hypothetical protein | phrog_7760 | tail fiber protein | tail | 1 | 33642 | 34451 |
| CCI88385.2 | HE956707_p4 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 1954 | 2490 |
| CCI88417.2 | HE956707_p36 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22212 | 23225 |
| CCI88428.2 | HE956707_p47 | phage DNA packaging | phrog_38 | terminase large subunit | head and packaging | 1 | 37782 | 39671 |
| CCI88402.2 | HE956707_p21 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 8407 | 9324 |
| SGA03419.1 | HE956707_p49 | prophage lysozyme | phrog_7 | endolysin | lysis | 1 | 40609 | 41166 |
| CCI88403.2 | HE956707_p22 | DNA polymerase I, phage-associated | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9418 | 11865 |
| CCI88416.2 | HE956707_p35 | hypothetical protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 21332 | 22129 |
| SGA03418.1 | HE956707_p48 | hypothetical protein | phrog_38617 | unknown function | unknown function | 1 | 39668 | 40597 |
| CCI88412.2 | HE956707_p31 | hypothetical protein | phrog_5112 | unknown function | unknown function | 1 | 18822 | 18989 |
| CCI88387.2 | HE956707_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2709 | 2960 |
| CCI88401.2 | HE956707_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8274 | 8414 |
| CCI88405.1 | HE956707_p13 | hypothetical protein | phrog_9577 | unknown function | unknown function | 1 | 4720 | 5115 |
| CCI88391.2 | HE956707_p10 | hypothetical protein | phrog_11917 | unknown function | unknown function | 1 | 3688 | 3837 |
| CCI88398.2 | HE956707_p17 | hypothetical protein | phrog_8634 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 6083 | 6772 |
| CCI88397.2 | HE956707_p16 | hypothetical protein | phrog_11140 | unknown function | unknown function | 1 | 5805 | 6029 |
| SGA03420.1 | HE956707_p50 | hypothetical protein | phrog_214 | Rz-like spanin | lysis | 1 | 41130 | 41510 |
| CCI88423.2 | HE956707_p42 | lytic transglycosylase, catalytic | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29828 | 33589 |
| CCI88409.2 | HE956707_p28 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 15518 | 15628 |
| CCI88407.2 | HE956707_p26 | hypothetical protein | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 14101 | 14550 |
| CCI88415.1 | HE956707_p24 | hypothetical protein | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 12776 | 13693 |
| CCI88414.2 | HE956707_p33 | hypothetical protein | phrog_6529 | unknown function | unknown function | 1 | 19413 | 19826 |
| CCI88425.2 | HE956707_p44 | Tail protein I | phrog_2871 | tail protein | tail | 1 | 34448 | 37237 |
| CCI88396.2 | HE956707_p15 | hypothetical protein | phrog_5965 | unknown function | unknown function | 1 | 5465 | 5722 |
| CCI88392.2 | HE956707_p11 | hypothetical protein | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 3840 | 4217 |
| CCI88404.2 | HE956707_p23 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 11916 | 12746 |
| CCI88386.2 | HE956707_p5 | hypothetical protein | phrog_7319 | unknown function | unknown function | 1 | 2554 | 2709 |
| CCI88390.2 | HE956707_p9 | hypothetical protein | phrog_6379 | unknown function | unknown function | 1 | 3440 | 3691 |
| CCI88418.2 | HE956707_p37 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23275 | 23862 |
| CCI88394.1 | HE956707_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 812 | 925 |
| CCI88411.2 | HE956707_p30 | RNA polymerase, phage-associated | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 16260 | 18692 |
| CCI88393.2 | HE956707_p12 | hypothetical protein | phrog_28110 | unknown function | unknown function | 1 | 4229 | 4720 |
| CCI88426.2 | HE956707_p45 | hypothetical protein | phrog_920 | holin | lysis | 1 | 37239 | 37439 |
| SGA03416.1 | HE956707_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1536 | 1778 |
| CCI88406.2 | HE956707_p25 | hypothetical protein | phrog_9561 | unknown function | unknown function | 1 | 13686 | 14111 |
| CCI88383.2 | HE956707_p2 | hypothetical protein | phrog_9286 | unknown function | unknown function | 1 | 1064 | 1444 |
| CCI88413.2 | HE956707_p32 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18986 | 19411 |
| CCI88388.2 | HE956707_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2964 | 3158 |
| CCI88395.2 | HE956707_p14 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 5115 | 5423 |
| CCI88424.1 | HE956707_p34 | Phage collar | phrog_449 | head-tail adaptor | connector | 1 | 19836 | 21332 |
| CCI88419.2 | HE956707_p38 | Phage tail fiber protein | phrog_457 | tail protein | tail | 1 | 23865 | 26411 |
| CCI88421.2 | HE956707_p40 | hypothetical protein | phrog_5745 | internal virion protein | head and packaging | 1 | 26761 | 27558 |
| CCI88399.2 | HE956707_p18 | DNA helicase, phage-associated | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 6742 | 7986 |
| CCI88410.2 | HE956707_p29 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 15625 | 16257 |
| CCI88389.2 | HE956707_p8 | hypothetical protein | phrog_28513 | unknown function | unknown function | 1 | 3155 | 3376 |
| CCI88427.2 | HE956707_p46 | hypothetical protein | phrog_9441 | terminase small subunit | head and packaging | 1 | 37426 | 37779 |
| CCI88408.2 | HE956707_p27 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 14550 | 15521 |
| CCI88384.1 | HE956707_p41 | hypothetical protein | phrog_3883 | internal virion protein | head and packaging | 1 | 27568 | 29826 |
| CCI88400.2 | HE956707_p19 | hypothetical protein | phrog_13874 | unknown function | unknown function | 1 | 7995 | 8222 |
| CCI88382.1 | HE956707_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26485 | 26757 |