Genomic map of Yersinia phage phiR8-01 (HE956707)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
HE956707
Definition
Yersinia phage phiR8-01 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Pienvirus; Yersinia virus R8-01.
DB of origin
PVOG
Length
42085
Host Name
Yersinia
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
51.84
Number of singletons
6
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
SGA03417.1 HE956707_p43 hypothetical protein phrog_7760 tail fiber protein tail 1 33642 34451
CCI88385.2 HE956707_p4 hypothetical protein phrog_1448 unknown function unknown function 1 1954 2490
CCI88417.2 HE956707_p36 major capsid protein phrog_267 major head protein head and packaging 1 22212 23225
CCI88428.2 HE956707_p47 phage DNA packaging phrog_38 terminase large subunit head and packaging 1 37782 39671
CCI88402.2 HE956707_p21 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 8407 9324
SGA03419.1 HE956707_p49 prophage lysozyme phrog_7 endolysin lysis 1 40609 41166
CCI88403.2 HE956707_p22 DNA polymerase I, phage-associated phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 9418 11865
CCI88416.2 HE956707_p35 hypothetical protein phrog_1018 head scaffolding protein head and packaging 1 21332 22129
SGA03418.1 HE956707_p48 hypothetical protein phrog_38617 unknown function unknown function 1 39668 40597
CCI88412.2 HE956707_p31 hypothetical protein phrog_5112 unknown function unknown function 1 18822 18989
CCI88387.2 HE956707_p6 hypothetical protein singleton unknown function unknown function 1 2709 2960
CCI88401.2 HE956707_p20 hypothetical protein singleton unknown function unknown function 1 8274 8414
CCI88405.1 HE956707_p13 hypothetical protein phrog_9577 unknown function unknown function 1 4720 5115
CCI88391.2 HE956707_p10 hypothetical protein phrog_11917 unknown function unknown function 1 3688 3837
CCI88398.2 HE956707_p17 hypothetical protein phrog_8634 DNA primase DNA, RNA and nucleotide metabolism 1 6083 6772
CCI88397.2 HE956707_p16 hypothetical protein phrog_11140 unknown function unknown function 1 5805 6029
SGA03420.1 HE956707_p50 hypothetical protein phrog_214 Rz-like spanin lysis 1 41130 41510
CCI88423.2 HE956707_p42 lytic transglycosylase, catalytic phrog_342 internal virion protein with endolysin domain head and packaging 1 29828 33589
CCI88409.2 HE956707_p28 hypothetical protein phrog_1312 unknown function unknown function 1 15518 15628
CCI88407.2 HE956707_p26 hypothetical protein phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 14101 14550
CCI88415.1 HE956707_p24 hypothetical protein phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 12776 13693
CCI88414.2 HE956707_p33 hypothetical protein phrog_6529 unknown function unknown function 1 19413 19826
CCI88425.2 HE956707_p44 Tail protein I phrog_2871 tail protein tail 1 34448 37237
CCI88396.2 HE956707_p15 hypothetical protein phrog_5965 unknown function unknown function 1 5465 5722
CCI88392.2 HE956707_p11 hypothetical protein phrog_2226 SAM-dependent methyltransferase other 1 3840 4217
CCI88404.2 HE956707_p23 hypothetical protein phrog_862 unknown function unknown function 1 11916 12746
CCI88386.2 HE956707_p5 hypothetical protein phrog_7319 unknown function unknown function 1 2554 2709
CCI88390.2 HE956707_p9 hypothetical protein phrog_6379 unknown function unknown function 1 3440 3691
CCI88418.2 HE956707_p37 tail tubular protein A phrog_446 tail protein tail 1 23275 23862
CCI88394.1 HE956707_p1 hypothetical protein singleton unknown function unknown function -1 812 925
CCI88411.2 HE956707_p30 RNA polymerase, phage-associated phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 16260 18692
CCI88393.2 HE956707_p12 hypothetical protein phrog_28110 unknown function unknown function 1 4229 4720
CCI88426.2 HE956707_p45 hypothetical protein phrog_920 holin lysis 1 37239 37439
SGA03416.1 HE956707_p3 hypothetical protein singleton unknown function unknown function -1 1536 1778
CCI88406.2 HE956707_p25 hypothetical protein phrog_9561 unknown function unknown function 1 13686 14111
CCI88383.2 HE956707_p2 hypothetical protein phrog_9286 unknown function unknown function 1 1064 1444
CCI88413.2 HE956707_p32 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18986 19411
CCI88388.2 HE956707_p7 hypothetical protein singleton unknown function unknown function 1 2964 3158
CCI88395.2 HE956707_p14 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 5115 5423
CCI88424.1 HE956707_p34 Phage collar phrog_449 head-tail adaptor connector 1 19836 21332
CCI88419.2 HE956707_p38 Phage tail fiber protein phrog_457 tail protein tail 1 23865 26411
CCI88421.2 HE956707_p40 hypothetical protein phrog_5745 internal virion protein head and packaging 1 26761 27558
CCI88399.2 HE956707_p18 DNA helicase, phage-associated phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 6742 7986
CCI88410.2 HE956707_p29 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 15625 16257
CCI88389.2 HE956707_p8 hypothetical protein phrog_28513 unknown function unknown function 1 3155 3376
CCI88427.2 HE956707_p46 hypothetical protein phrog_9441 terminase small subunit head and packaging 1 37426 37779
CCI88408.2 HE956707_p27 hypothetical protein phrog_221 metallo-phosphoesterase other 1 14550 15521
CCI88384.1 HE956707_p41 hypothetical protein phrog_3883 internal virion protein head and packaging 1 27568 29826
CCI88400.2 HE956707_p19 hypothetical protein phrog_13874 unknown function unknown function 1 7995 8222
CCI88382.1 HE956707_p39 hypothetical protein singleton unknown function unknown function 1 26485 26757