Genomic map of Campylobacter virus IBB35 (HM246720)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
HM246720
Definition
Campylobacter phage vB_CcoM-IBB_35 clone Contig1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Eucampyvirinae; Firehammervirus.
DB of origin
NUCCORE
Length
53237
Host Name
Campylobacter
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
27.26
Number of singletons
13
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEF56767.1 HM246720_p32 hypothetical protein phrog_8774 unknown function unknown function 1 25250 25615
AEF56783.1 HM246720_p48 hypothetical protein singleton unknown function unknown function 1 34053 34283
AEF56793.1 HM246720_p58 hypothetical protein phrog_24819 unknown function unknown function 1 40619 43090
AEF56755.1 HM246720_p20 hypothetical protein singleton unknown function unknown function 1 18946 19068
AEF56771.1 HM246720_p36 hypothetical protein phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover 1 27630 27923
AEF56756.1 HM246720_p21 hypothetical protein phrog_98 unknown function unknown function 1 19222 19665
AEF56740.1 HM246720_p5 hypothetical protein singleton unknown function unknown function 1 2140 2325
AEF56785.1 HM246720_p50 hypothetical protein phrog_26017 unknown function unknown function 1 35251 35838
AEF56750.1 HM246720_p15 gp19 tail tube protein phrog_45 tail tube tail 1 14677 15267
AEF56757.1 HM246720_p22 hypothetical protein singleton unknown function unknown function 1 19662 19931
AEF56781.1 HM246720_p46 hypothetical protein singleton unknown function unknown function 1 33520 33675
AEF56754.1 HM246720_p19 hypothetical protein phrog_26989 unknown function unknown function 1 18846 19124
AEF56744.1 HM246720_p9 gp18 tail sheath protein phrog_23 tail sheath tail 1 6073 7809
AEF56786.1 HM246720_p51 hypothetical protein phrog_20447 unknown function unknown function 1 35989 36285
AEF56800.1 HM246720_p65 hypothetical protein phrog_23315 unknown function unknown function 1 50092 50253
AEF56742.1 HM246720_p7 gp23 major capsid protein phrog_138 major head protein head and packaging 1 2944 4278
AEF56788.1 HM246720_p53 hypothetical protein phrog_21402 unknown function unknown function 1 36779 37252
AEF56773.1 HM246720_p38 hypothetical protein singleton unknown function unknown function 1 28285 28722
AEF56743.1 HM246720_p8 gp18 T4-like tail sheath protein phrog_20545 tail sheath tail 1 4504 6069
AEF56759.1 HM246720_p24 hypothetical protein singleton unknown function unknown function 1 20309 20407
AEF56779.1 HM246720_p44 hypothetical protein singleton unknown function unknown function 1 32880 33050
AEF56737.1 HM246720_p2 hypothetical protein singleton unknown function unknown function 1 917 1189
AEF56764.1 HM246720_p29 hypothetical protein phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover 1 23138 23701
AEF56758.1 HM246720_p23 hypothetical protein phrog_11325 unknown function unknown function 1 20073 20312
AEF56789.1 HM246720_p54 hypothetical protein phrog_21967 unknown function unknown function 1 37267 37500
AEF56784.1 HM246720_p49 hypothetical protein phrog_21754 unknown function unknown function 1 34455 34910
AEF56787.1 HM246720_p52 hypothetical protein phrog_3878 unknown function unknown function 1 36327 36719
AEF56739.1 HM246720_p4 hypothetical protein phrog_19223 unknown function unknown function 1 1680 1934
AEF56776.1 HM246720_p41 hypothetical protein phrog_30364 unknown function unknown function 1 30078 30311
AEF56797.1 HM246720_p62 hypothetical protein phrog_20912 unknown function unknown function -1 45638 47392
AEF56765.1 HM246720_p30 hypothetical protein phrog_19238 unknown function unknown function 1 23937 24605
AEF56780.1 HM246720_p45 hypothetical protein singleton unknown function unknown function 1 33047 33529
AEF56741.1 HM246720_p6 gp22 major prohead-scaffolding core protein singleton unknown function unknown function 1 2438 2872
AEF56775.1 HM246720_p40 hypothetical protein singleton unknown function unknown function 1 29610 29801
AEF56802.1 HM246720_p67 hypothetical protein phrog_20410 membrane protein moron, auxiliary metabolic gene and host takeover -1 52377 53159
AEF56752.1 HM246720_p17 PhoH family precursor phrog_2765 PhoH-like phosphate starvation-inducible other 1 15971 17890
AEF56792.1 HM246720_p57 hypothetical protein phrog_19290 unknown function unknown function 1 39251 40417
AEF56798.1 HM246720_p63 transposase phrog_506 transposase integration and excision 1 47774 48988
AEF56761.1 HM246720_p26 hypothetical protein phrog_16068 unknown function unknown function 1 21240 21458
AEF56799.1 HM246720_p64 hypothetical protein phrog_20709 unknown function unknown function 1 49165 49917
AEF56766.1 HM246720_p31 hypothetical protein phrog_17273 unknown function unknown function 1 24670 25212
AEF56777.1 HM246720_p42 hypothetical protein phrog_24890 radical SAM domain-containing protein other 1 30349 31875
AEF56778.1 HM246720_p43 hypothetical protein phrog_25854 unknown function unknown function 1 31885 32856
AEF56747.1 HM246720_p12 hypothetical protein phrog_6931 unknown function unknown function 1 11328 12359
AEF56760.1 HM246720_p25 hypothetical protein phrog_14949 unknown function unknown function 1 20404 21132
AEF56790.1 HM246720_p55 hypothetical protein phrog_21777 unknown function unknown function 1 37500 38177
AEF56795.1 HM246720_p60 hypothetical protein phrog_19602 tail fiber protein tail 1 43747 45261
AEF56753.1 HM246720_p18 hypothetical protein phrog_9351 unknown function unknown function 1 18214 18624
AEF56746.1 HM246720_p11 Hef phrog_3339 homing endonuclease DNA, RNA and nucleotide metabolism 1 9688 11283
AEF56748.1 HM246720_p13 hypothetical protein phrog_19058 unknown function unknown function 1 12505 13281
AEF56768.1 HM246720_p33 hypothetical protein phrog_18761 unknown function unknown function 1 25655 26233
AEF56749.1 HM246720_p14 hypothetical protein phrog_2107 thymidylate kinase other 1 13323 13865
AEF56794.1 HM246720_p59 hypothetical protein phrog_21529 unknown function unknown function 1 43215 43640
AEF56796.1 HM246720_p61 hypothetical protein phrog_38363 unknown function unknown function 1 45291 45515
AEF56801.1 HM246720_p66 hypothetical protein phrog_20595 unknown function unknown function 1 50293 52380
AEF56772.1 HM246720_p37 hypothetical protein phrog_20991 unknown function unknown function 1 27948 28199
AEF56751.1 HM246720_p16 gp2 DNA end protector protein phrog_429 DNA end protector DNA, RNA and nucleotide metabolism 1 15299 15667
AEF56791.1 HM246720_p56 hypothetical protein phrog_19488 radical SAM domain-containing protein other 1 38262 39233
AEF56782.1 HM246720_p47 hypothetical protein singleton unknown function unknown function 1 33677 33940
AEF56769.1 HM246720_p34 Rhs element Vgr family protein phrog_430 baseplate hub subunit and tail lysozyme tail 1 26296 27180
AEF56774.1 HM246720_p39 hypothetical protein phrog_14526 unknown function unknown function 1 28719 29591
AEF56763.1 HM246720_p28 hypothetical protein phrog_691 partition protein DNA, RNA and nucleotide metabolism 1 22137 23123
AEF56736.1 HM246720_p1 hypothetical protein phrog_19554 unknown function unknown function 1 160 819
AEF56770.1 HM246720_p35 hypothetical protein phrog_19014 membrane protein moron, auxiliary metabolic gene and host takeover 1 27220 27630
AEF56738.1 HM246720_p3 gp55 T4-like sigma factor involved in late transcription phrog_19643 RNA polymerase sigma factor transcription regulation 1 1183 1683
AEF56745.1 HM246720_p10 Hef phrog_3339 homing endonuclease DNA, RNA and nucleotide metabolism -1 7844 9568
AEF56762.1 HM246720_p27 hypothetical protein phrog_19505 unknown function unknown function 1 21593 22081