| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
HM246720 |
Definition |
Campylobacter phage vB_CcoM-IBB_35 clone Contig1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Eucampyvirinae; Firehammervirus. |
DB of origin |
NUCCORE |
Length |
53237 |
Host Name |
Campylobacter |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
27.26 |
Number of singletons |
13 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEF56767.1 | HM246720_p32 | hypothetical protein | phrog_8774 | unknown function | unknown function | 1 | 25250 | 25615 |
| AEF56783.1 | HM246720_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34053 | 34283 |
| AEF56793.1 | HM246720_p58 | hypothetical protein | phrog_24819 | unknown function | unknown function | 1 | 40619 | 43090 |
| AEF56755.1 | HM246720_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18946 | 19068 |
| AEF56771.1 | HM246720_p36 | hypothetical protein | phrog_281 | PAAR motif of membran proteins | moron, auxiliary metabolic gene and host takeover | 1 | 27630 | 27923 |
| AEF56756.1 | HM246720_p21 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 19222 | 19665 |
| AEF56740.1 | HM246720_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2140 | 2325 |
| AEF56785.1 | HM246720_p50 | hypothetical protein | phrog_26017 | unknown function | unknown function | 1 | 35251 | 35838 |
| AEF56750.1 | HM246720_p15 | gp19 tail tube protein | phrog_45 | tail tube | tail | 1 | 14677 | 15267 |
| AEF56757.1 | HM246720_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19662 | 19931 |
| AEF56781.1 | HM246720_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33520 | 33675 |
| AEF56754.1 | HM246720_p19 | hypothetical protein | phrog_26989 | unknown function | unknown function | 1 | 18846 | 19124 |
| AEF56744.1 | HM246720_p9 | gp18 tail sheath protein | phrog_23 | tail sheath | tail | 1 | 6073 | 7809 |
| AEF56786.1 | HM246720_p51 | hypothetical protein | phrog_20447 | unknown function | unknown function | 1 | 35989 | 36285 |
| AEF56800.1 | HM246720_p65 | hypothetical protein | phrog_23315 | unknown function | unknown function | 1 | 50092 | 50253 |
| AEF56742.1 | HM246720_p7 | gp23 major capsid protein | phrog_138 | major head protein | head and packaging | 1 | 2944 | 4278 |
| AEF56788.1 | HM246720_p53 | hypothetical protein | phrog_21402 | unknown function | unknown function | 1 | 36779 | 37252 |
| AEF56773.1 | HM246720_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28285 | 28722 |
| AEF56743.1 | HM246720_p8 | gp18 T4-like tail sheath protein | phrog_20545 | tail sheath | tail | 1 | 4504 | 6069 |
| AEF56759.1 | HM246720_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20309 | 20407 |
| AEF56779.1 | HM246720_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32880 | 33050 |
| AEF56737.1 | HM246720_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 917 | 1189 |
| AEF56764.1 | HM246720_p29 | hypothetical protein | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 23138 | 23701 |
| AEF56758.1 | HM246720_p23 | hypothetical protein | phrog_11325 | unknown function | unknown function | 1 | 20073 | 20312 |
| AEF56789.1 | HM246720_p54 | hypothetical protein | phrog_21967 | unknown function | unknown function | 1 | 37267 | 37500 |
| AEF56784.1 | HM246720_p49 | hypothetical protein | phrog_21754 | unknown function | unknown function | 1 | 34455 | 34910 |
| AEF56787.1 | HM246720_p52 | hypothetical protein | phrog_3878 | unknown function | unknown function | 1 | 36327 | 36719 |
| AEF56739.1 | HM246720_p4 | hypothetical protein | phrog_19223 | unknown function | unknown function | 1 | 1680 | 1934 |
| AEF56776.1 | HM246720_p41 | hypothetical protein | phrog_30364 | unknown function | unknown function | 1 | 30078 | 30311 |
| AEF56797.1 | HM246720_p62 | hypothetical protein | phrog_20912 | unknown function | unknown function | -1 | 45638 | 47392 |
| AEF56765.1 | HM246720_p30 | hypothetical protein | phrog_19238 | unknown function | unknown function | 1 | 23937 | 24605 |
| AEF56780.1 | HM246720_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33047 | 33529 |
| AEF56741.1 | HM246720_p6 | gp22 major prohead-scaffolding core protein | singleton | unknown function | unknown function | 1 | 2438 | 2872 |
| AEF56775.1 | HM246720_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29610 | 29801 |
| AEF56802.1 | HM246720_p67 | hypothetical protein | phrog_20410 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 52377 | 53159 |
| AEF56752.1 | HM246720_p17 | PhoH family precursor | phrog_2765 | PhoH-like phosphate starvation-inducible | other | 1 | 15971 | 17890 |
| AEF56792.1 | HM246720_p57 | hypothetical protein | phrog_19290 | unknown function | unknown function | 1 | 39251 | 40417 |
| AEF56798.1 | HM246720_p63 | transposase | phrog_506 | transposase | integration and excision | 1 | 47774 | 48988 |
| AEF56761.1 | HM246720_p26 | hypothetical protein | phrog_16068 | unknown function | unknown function | 1 | 21240 | 21458 |
| AEF56799.1 | HM246720_p64 | hypothetical protein | phrog_20709 | unknown function | unknown function | 1 | 49165 | 49917 |
| AEF56766.1 | HM246720_p31 | hypothetical protein | phrog_17273 | unknown function | unknown function | 1 | 24670 | 25212 |
| AEF56777.1 | HM246720_p42 | hypothetical protein | phrog_24890 | radical SAM domain-containing protein | other | 1 | 30349 | 31875 |
| AEF56778.1 | HM246720_p43 | hypothetical protein | phrog_25854 | unknown function | unknown function | 1 | 31885 | 32856 |
| AEF56747.1 | HM246720_p12 | hypothetical protein | phrog_6931 | unknown function | unknown function | 1 | 11328 | 12359 |
| AEF56760.1 | HM246720_p25 | hypothetical protein | phrog_14949 | unknown function | unknown function | 1 | 20404 | 21132 |
| AEF56790.1 | HM246720_p55 | hypothetical protein | phrog_21777 | unknown function | unknown function | 1 | 37500 | 38177 |
| AEF56795.1 | HM246720_p60 | hypothetical protein | phrog_19602 | tail fiber protein | tail | 1 | 43747 | 45261 |
| AEF56753.1 | HM246720_p18 | hypothetical protein | phrog_9351 | unknown function | unknown function | 1 | 18214 | 18624 |
| AEF56746.1 | HM246720_p11 | Hef | phrog_3339 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9688 | 11283 |
| AEF56748.1 | HM246720_p13 | hypothetical protein | phrog_19058 | unknown function | unknown function | 1 | 12505 | 13281 |
| AEF56768.1 | HM246720_p33 | hypothetical protein | phrog_18761 | unknown function | unknown function | 1 | 25655 | 26233 |
| AEF56749.1 | HM246720_p14 | hypothetical protein | phrog_2107 | thymidylate kinase | other | 1 | 13323 | 13865 |
| AEF56794.1 | HM246720_p59 | hypothetical protein | phrog_21529 | unknown function | unknown function | 1 | 43215 | 43640 |
| AEF56796.1 | HM246720_p61 | hypothetical protein | phrog_38363 | unknown function | unknown function | 1 | 45291 | 45515 |
| AEF56801.1 | HM246720_p66 | hypothetical protein | phrog_20595 | unknown function | unknown function | 1 | 50293 | 52380 |
| AEF56772.1 | HM246720_p37 | hypothetical protein | phrog_20991 | unknown function | unknown function | 1 | 27948 | 28199 |
| AEF56751.1 | HM246720_p16 | gp2 DNA end protector protein | phrog_429 | DNA end protector | DNA, RNA and nucleotide metabolism | 1 | 15299 | 15667 |
| AEF56791.1 | HM246720_p56 | hypothetical protein | phrog_19488 | radical SAM domain-containing protein | other | 1 | 38262 | 39233 |
| AEF56782.1 | HM246720_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33677 | 33940 |
| AEF56769.1 | HM246720_p34 | Rhs element Vgr family protein | phrog_430 | baseplate hub subunit and tail lysozyme | tail | 1 | 26296 | 27180 |
| AEF56774.1 | HM246720_p39 | hypothetical protein | phrog_14526 | unknown function | unknown function | 1 | 28719 | 29591 |
| AEF56763.1 | HM246720_p28 | hypothetical protein | phrog_691 | partition protein | DNA, RNA and nucleotide metabolism | 1 | 22137 | 23123 |
| AEF56736.1 | HM246720_p1 | hypothetical protein | phrog_19554 | unknown function | unknown function | 1 | 160 | 819 |
| AEF56770.1 | HM246720_p35 | hypothetical protein | phrog_19014 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 27220 | 27630 |
| AEF56738.1 | HM246720_p3 | gp55 T4-like sigma factor involved in late transcription | phrog_19643 | RNA polymerase sigma factor | transcription regulation | 1 | 1183 | 1683 |
| AEF56745.1 | HM246720_p10 | Hef | phrog_3339 | homing endonuclease | DNA, RNA and nucleotide metabolism | -1 | 7844 | 9568 |
| AEF56762.1 | HM246720_p27 | hypothetical protein | phrog_19505 | unknown function | unknown function | 1 | 21593 | 22081 |