| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
HQ641341 |
Definition |
Vibrio phage ICP3_2009_B, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; unclassified Chatterjeevirus. |
DB of origin |
PVOG |
Length |
39042 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
42.76 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ADX87517.1 | HQ641341_p23 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16688 | 17140 |
| ADX87506.1 | HQ641341_p12 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 8492 | 10198 |
| ADX87536.1 | HQ641341_p42 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 35892 | 36125 |
| ADX87539.1 | HQ641341_p45 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 36601 | 38319 |
| ADX87522.1 | HQ641341_p28 | host specificity protein B | phrog_10099 | unknown function | unknown function | 1 | 18701 | 18991 |
| ADX87534.1 | HQ641341_p40 | lysis protein | phrog_920 | holin | lysis | 1 | 35138 | 35332 |
| ADX87504.1 | HQ641341_p10 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 7798 | 8193 |
| ADX87516.1 | HQ641341_p22 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 16017 | 16688 |
| ADX87520.1 | HQ641341_p26 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18007 | 18258 |
| ADX87525.1 | HQ641341_p31 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21666 | 22793 |
| ADX87524.1 | HQ641341_p30 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20687 | 21547 |
| ADX87533.1 | HQ641341_p39 | tail fiber protein | phrog_6256 | tail fiber protein | tail | 1 | 33377 | 35116 |
| ADX87515.1 | HQ641341_p21 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15050 | 15925 |
| ADX87499.1 | HQ641341_p5 | hypothetical protein | phrog_11350 | unknown function | unknown function | 1 | 5903 | 6229 |
| ADX87530.1 | HQ641341_p36 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 27066 | 27656 |
| ADX87514.1 | HQ641341_p20 | hypothetical protein | phrog_2294 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 14644 | 15057 |
| ADX87532.1 | HQ641341_p38 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29914 | 33297 |
| ADX87503.1 | HQ641341_p9 | hypothetical protein | phrog_10197 | unknown function | unknown function | 1 | 7501 | 7782 |
| ADX87518.1 | HQ641341_p24 | lysozyme | phrog_822 | amidase | lysis | 1 | 17140 | 17574 |
| ADX87496.1 | HQ641341_p2 | hypothetical protein | phrog_11474 | unknown function | unknown function | 1 | 1078 | 1269 |
| ADX87521.1 | HQ641341_p27 | host specificity protein A | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18294 | 18701 |
| ADX87529.1 | HQ641341_p35 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26561 | 27079 |
| ADX87500.1 | HQ641341_p6 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 6241 | 6924 |
| ADX87497.1 | HQ641341_p3 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1860 | 4511 |
| ADX87526.1 | HQ641341_p32 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22859 | 23452 |
| ADX87498.1 | HQ641341_p4 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4639 | 5619 |
| ADX87512.1 | HQ641341_p18 | hypothetical protein | phrog_11673 | unknown function | unknown function | 1 | 14120 | 14311 |
| ADX87523.1 | HQ641341_p29 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 19009 | 20607 |
| ADX87519.1 | HQ641341_p25 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17710 | 17991 |
| ADX87505.1 | HQ641341_p11 | hypothetical protein | phrog_11152 | unknown function | unknown function | 1 | 8298 | 8495 |
| ADX87507.1 | HQ641341_p13 | hypothetical protein | phrog_10688 | unknown function | unknown function | 1 | 10259 | 10573 |
| ADX87513.1 | HQ641341_p19 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 14447 | 14644 |
| ADX87502.1 | HQ641341_p8 | hypothetical protein | phrog_11648 | unknown function | unknown function | 1 | 7310 | 7462 |
| ADX87511.1 | HQ641341_p17 | hypothetical protein | phrog_10513 | unknown function | unknown function | 1 | 13741 | 14133 |
| ADX87510.1 | HQ641341_p16 | hypothetical protein | phrog_10985 | unknown function | unknown function | 1 | 13447 | 13611 |
| ADX87509.1 | HQ641341_p15 | hypothetical protein | phrog_10848 | unknown function | unknown function | 1 | 11104 | 11361 |
| ADX87531.1 | HQ641341_p37 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27688 | 29901 |
| ADX87508.1 | HQ641341_p14 | hypothetical protein | phrog_10620 | unknown function | unknown function | 1 | 10659 | 11117 |
| ADX87535.1 | HQ641341_p41 | hypothetical protein | phrog_12315 | unknown function | unknown function | 1 | 35449 | 35880 |
| ADX87495.1 | HQ641341_p1 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 526 | 957 |
| ADX87537.1 | HQ641341_p43 | hypothetical protein | phrog_4712 | holin | lysis | 1 | 36144 | 36287 |
| ADX87527.1 | HQ641341_p33 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23464 | 25848 |
| ADX87538.1 | HQ641341_p44 | hypothetical protein | phrog_10167 | unknown function | unknown function | 1 | 36287 | 36484 |
| ADX87528.1 | HQ641341_p34 | deoxyribonucleoside kinase | phrog_761 | thymidylate kinase | other | 1 | 25936 | 26568 |
| ADX87501.1 | HQ641341_p7 | host RNA polymerase inhibitory protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 6966 | 7139 |