Genomic map of Vibrio phage ICP3_2008_A (HQ641343)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
HQ641343
Definition
Vibrio phage ICP3_2008_A, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; unclassified Chatterjeevirus.
DB of origin
PVOG
Length
39349
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
42.8
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ADX87612.1 HQ641343_p25 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 16133 16804
ADX87607.1 HQ641343_p20 hypothetical protein phrog_10513 unknown function unknown function 1 13857 14249
ADX87605.1 HQ641343_p18 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11516 13552
ADX87596.1 HQ641343_p9 hypothetical protein phrog_11648 unknown function unknown function 1 7299 7451
ADX87623.1 HQ641343_p36 tail tubular protein B phrog_457 tail protein tail 1 23577 25964
ADX87594.1 HQ641343_p7 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 6230 6913
ADX87635.1 HQ641343_p48 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 36876 38594
ADX87588.1 HQ641343_p1 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 515 946
ADX87599.1 HQ641343_p12 hypothetical protein phrog_5138 unknown function unknown function 1 7946 8341
ADX87609.1 HQ641343_p22 hypothetical protein phrog_1334 unknown function unknown function 1 14563 14760
ADX87604.1 HQ641343_p17 hypothetical protein phrog_10848 unknown function unknown function 1 11252 11509
ADX87626.1 HQ641343_p39 internal virion protein B phrog_805 internal virion protein head and packaging 1 27182 27772
ADX87618.1 HQ641343_p31 host specificity protein B phrog_10099 unknown function unknown function 1 18817 19107
ADX87627.1 HQ641343_p40 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27804 30017
ADX87606.1 HQ641343_p19 hypothetical protein phrog_10985 unknown function unknown function 1 13563 13727
ADX87632.1 HQ641343_p45 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 36167 36400
ADX87619.1 HQ641343_p32 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 19125 20723
ADX87630.1 HQ641343_p43 lysis protein phrog_920 holin lysis 1 35254 35448
ADX87589.1 HQ641343_p2 hypothetical protein phrog_11474 unknown function unknown function 1 1067 1258
ADX87601.1 HQ641343_p14 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 8640 10346
ADX87633.1 HQ641343_p46 hypothetical protein phrog_4712 holin lysis 1 36419 36562
ADX87608.1 HQ641343_p21 hypothetical protein phrog_11673 unknown function unknown function 1 14236 14427
ADX87592.1 HQ641343_p5 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4628 5608
ADX87602.1 HQ641343_p15 hypothetical protein phrog_10688 unknown function unknown function 1 10407 10721
ADX87620.1 HQ641343_p33 capsid assembly protein phrog_1052 head assembly head and packaging 1 20803 21663
ADX87595.1 HQ641343_p8 host RNA polymerase inhibitory protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 6955 7128
ADX87614.1 HQ641343_p27 lysozyme phrog_822 amidase lysis 1 17256 17690
ADX87631.1 HQ641343_p44 hypothetical protein phrog_12315 unknown function unknown function 1 35634 36155
ADX87624.1 HQ641343_p37 deoxyribonucleoside kinase phrog_761 thymidylate kinase other 1 26052 26684
ADX87591.1 HQ641343_p4 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1849 4500
ADX87610.1 HQ641343_p23 hypothetical protein phrog_2294 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 14760 15173
ADX87593.1 HQ641343_p6 hypothetical protein phrog_11350 unknown function unknown function 1 5892 6218
ADX87590.1 HQ641343_p3 hypothetical protein phrog_13599 unknown function unknown function 1 1255 1455
ADX87598.1 HQ641343_p11 hypothetical protein phrog_38837 unknown function unknown function 1 7787 7930
ADX87600.1 HQ641343_p13 hypothetical protein phrog_11152 unknown function unknown function 1 8446 8643
ADX87621.1 HQ641343_p34 major capsid protein phrog_267 major head protein head and packaging 1 21782 22906
ADX87603.1 HQ641343_p16 hypothetical protein phrog_10620 unknown function unknown function 1 10807 11265
ADX87615.1 HQ641343_p28 hypothetical protein phrog_1447 unknown function unknown function 1 17826 18107
ADX87613.1 HQ641343_p26 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 16804 17256
ADX87629.1 HQ641343_p42 tail fiber protein phrog_6256 tail fiber protein tail 1 33493 35232
ADX87597.1 HQ641343_p10 hypothetical protein phrog_10197 unknown function unknown function 1 7490 7771
ADX87625.1 HQ641343_p38 internal virion protein A phrog_308 internal virion protein head and packaging 1 26677 27195
ADX87634.1 HQ641343_p47 hypothetical protein phrog_10167 unknown function unknown function 1 36562 36759
ADX87622.1 HQ641343_p35 tail tubular protein A phrog_446 tail protein tail 1 22972 23565
ADX87628.1 HQ641343_p41 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 30030 33413
ADX87611.1 HQ641343_p24 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15166 16041
ADX87616.1 HQ641343_p29 hypothetical protein phrog_1391 unknown function unknown function 1 18123 18374
ADX87617.1 HQ641343_p30 host specificity protein A phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18410 18817