| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF704105 |
Definition |
Mycobacterium phage Adephagia, complete sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
PVOG |
Length |
59646 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
66.6 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEJ95815.1 | JF704105_p45 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 35663 | 36013 |
| AEJ95807.1 | JF704105_p37 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30542 | 31228 |
| AEJ95841.1 | JF704105_p71 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 48568 | 49755 |
| AEJ95810.1 | JF704105_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 32476 | 33564 |
| AEJ95825.1 | JF704105_p55 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 39774 | 39974 |
| AEJ95814.1 | JF704105_p44 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 35395 | 35661 |
| AEJ95846.1 | JF704105_p76 | hypothetical protein | phrog_5776 | unknown function | unknown function | 1 | 51291 | 51419 |
| AEJ95817.1 | JF704105_p47 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 36356 | 36568 |
| AEJ95789.1 | JF704105_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11232 | 12079 |
| AEJ95844.1 | JF704105_p74 | SprT | phrog_1006 | unknown function | unknown function | 1 | 50343 | 50804 |
| AEJ95809.1 | JF704105_p39 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 31816 | 32118 |
| AEJ95790.1 | JF704105_p20 | tapemeasure protein | phrog_971 | endolysin | lysis | 1 | 12079 | 15915 |
| AEJ95773.1 | JF704105_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 476 | 730 |
| AEJ95782.1 | JF704105_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7931 | 8869 |
| AEJ95792.1 | JF704105_p22 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17154 | 18920 |
| AEJ95811.1 | JF704105_p41 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33669 | 34550 |
| AEJ95774.1 | JF704105_p4 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 727 | 954 |
| AEJ95778.1 | JF704105_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3020 | 4579 |
| AEJ95839.1 | JF704105_p69 | RusA | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47419 | 48117 |
| AEJ95771.1 | JF704105_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 79 | 297 |
| AEJ95803.1 | JF704105_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28121 | 28372 |
| AEJ95779.1 | JF704105_p9 | hypothetical protein | phrog_1752 | head maturation protease | head and packaging | 1 | 4584 | 7094 |
| AEJ95861.1 | JF704105_p91 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 58177 | 58446 |
| AEJ95787.1 | JF704105_p17 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10504 | 11118 |
| AEJ95791.1 | JF704105_p21 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 16017 | 17153 |
| AEJ95801.1 | JF704105_p31 | hypothetical protein | phrog_565 | holin | lysis | 1 | 27343 | 27783 |
| AEJ95833.1 | JF704105_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42714 | 42896 |
| AEJ95826.1 | JF704105_p56 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39986 | 40540 |
| AEJ95777.1 | JF704105_p7 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1587 | 3008 |
| AEJ95818.1 | JF704105_p48 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 36565 | 37356 |
| AEJ95776.1 | JF704105_p6 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1376 | 1603 |
| AEJ95848.1 | JF704105_p78 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 52315 | 52791 |
| AEJ95852.1 | JF704105_p82 | hypothetical protein | phrog_6426 | unknown function | unknown function | 1 | 53562 | 53714 |
| AEJ95849.1 | JF704105_p79 | hypothetical protein | phrog_5794 | unknown function | unknown function | 1 | 52785 | 53066 |
| AEJ95800.1 | JF704105_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 26460 | 27332 |
| AEJ95819.1 | JF704105_p49 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 37353 | 37616 |
| AEJ95804.1 | JF704105_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28359 | 29567 |
| AEJ95831.1 | JF704105_p61 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42168 | 42401 |
| AEJ95862.1 | JF704105_p92 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 58879 | 59109 |
| AEJ95788.1 | JF704105_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11232 | 11669 |
| AEJ95837.1 | JF704105_p67 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43979 | 44350 |
| AEJ95827.1 | JF704105_p57 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 40540 | 40806 |
| AEJ95858.1 | JF704105_p88 | hypothetical protein | phrog_5812 | unknown function | unknown function | 1 | 56834 | 57463 |
| AEJ95805.1 | JF704105_p35 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29760 | 30191 |
| AEJ95842.1 | JF704105_p72 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 49768 | 50001 |
| AEJ95802.1 | JF704105_p32 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 27786 | 28124 |
| AEJ95799.1 | JF704105_p29 | lysin A | phrog_1519 | endolysin | lysis | 1 | 24808 | 26463 |
| AEJ95847.1 | JF704105_p77 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 51416 | 52318 |
| AEJ95824.1 | JF704105_p54 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39499 | 39777 |
| AEJ95781.1 | JF704105_p11 | hypothetical protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7313 | 7855 |
| AEJ95822.1 | JF704105_p52 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 38768 | 39118 |
| AEJ95794.1 | JF704105_p24 | minor tail subunit | phrog_1565 | minor tail protein | tail | 1 | 19480 | 20562 |
| AEJ95780.1 | JF704105_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7091 | 7276 |
| AEJ95840.1 | JF704105_p70 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48110 | 48571 |
| AEJ95821.1 | JF704105_p51 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 38566 | 38736 |
| AEJ95808.1 | JF704105_p38 | hypothetical protein | phrog_7081 | unknown function | unknown function | 1 | 31344 | 31742 |
| AEJ95864.1 | JF704105_p94 | HNH endonuclease domain protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59285 | 59587 |
| AEJ95823.1 | JF704105_p53 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39115 | 39498 |
| AEJ95796.1 | JF704105_p26 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 20878 | 23310 |
| AEJ95860.1 | JF704105_p90 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 57814 | 58029 |
| AEJ95829.1 | JF704105_p59 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 41132 | 41296 |
| AEJ95816.1 | JF704105_p46 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 36192 | 36359 |
| AEJ95785.1 | JF704105_p15 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9701 | 9982 |
| AEJ95806.1 | JF704105_p36 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30176 | 30466 |
| AEJ95851.1 | JF704105_p81 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53368 | 53565 |
| AEJ95834.1 | JF704105_p64 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 42893 | 43402 |
| AEJ95783.1 | JF704105_p13 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8981 | 9367 |
| AEJ95832.1 | JF704105_p62 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42477 | 42692 |
| AEJ95784.1 | JF704105_p14 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 9364 | 9720 |
| AEJ95793.1 | JF704105_p23 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18920 | 19396 |
| AEJ95812.1 | JF704105_p42 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34598 | 34978 |
| AEJ95797.1 | JF704105_p27 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23322 | 24335 |
| AEJ95854.1 | JF704105_p84 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 55016 | 55402 |
| AEJ95795.1 | JF704105_p25 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20569 | 20877 |
| AEJ95830.1 | JF704105_p60 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41293 | 42171 |
| AEJ95845.1 | JF704105_p75 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 50929 | 51204 |
| AEJ95850.1 | JF704105_p80 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 53066 | 53368 |
| AEJ95836.1 | JF704105_p66 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 43743 | 43982 |
| AEJ95853.1 | JF704105_p83 | RNA terminal phosphate cyclase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 53826 | 55019 |
| AEJ95775.1 | JF704105_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1180 | 1383 |
| AEJ95863.1 | JF704105_p93 | hypothetical protein | phrog_5633 | unknown function | unknown function | 1 | 59103 | 59288 |
| AEJ95772.1 | JF704105_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 294 | 479 |
| AEJ95855.1 | JF704105_p85 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55402 | 55941 |
| AEJ95859.1 | JF704105_p89 | hypothetical protein | phrog_5243 | unknown function | unknown function | 1 | 57495 | 57692 |
| AEJ95843.1 | JF704105_p73 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 49998 | 50270 |
| AEJ95828.1 | JF704105_p58 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 40803 | 41135 |
| AEJ95835.1 | JF704105_p65 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43504 | 43746 |
| AEJ95838.1 | JF704105_p68 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44392 | 47010 |
| AEJ95798.1 | JF704105_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24419 | 24790 |
| AEJ95786.1 | JF704105_p16 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9979 | 10404 |
| AEJ95857.1 | JF704105_p87 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 56500 | 56661 |
| AEJ95856.1 | JF704105_p86 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 55949 | 56503 |
| AEJ95813.1 | JF704105_p43 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 35138 | 35398 |
| AEJ95820.1 | JF704105_p50 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 37613 | 38554 |