| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF704108 |
Definition |
Mycobacterium virus JoeDirt, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus. |
DB of origin |
PVOG |
Length |
74914 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
126 |
%GC |
58.78 |
Number of singletons |
4 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEK07100.1 | JF704108_p67 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 45775 | 46452 |
| AEK07053.1 | JF704108_p6 | protease | phrog_193 | head maturation protease | head and packaging | 1 | 4321 | 5376 |
| AEK07109.1 | JF704108_p79 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 52895 | 53218 |
| AEK07157.1 | JF704108_p124 | hypothetical protein | phrog_7398 | unknown function | unknown function | -1 | 73574 | 74086 |
| AEK07079.1 | JF704108_p38 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 32990 | 33313 |
| AEK07107.1 | JF704108_p76 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 51825 | 52229 |
| AEK07076.1 | JF704108_p29 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 27262 | 27681 |
| AEK07093.1 | JF704108_p56 | hypothetical protein | phrog_18302 | unknown function | unknown function | 1 | 41086 | 41268 |
| AEK07112.1 | JF704108_p83 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 54091 | 54474 |
| AEK07124.1 | JF704108_p96 | hypothetical protein | phrog_6910 | unknown function | unknown function | 1 | 59868 | 60224 |
| AEK07165.1 | JF704108_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45693 | 45839 |
| AEK07149.1 | JF704108_p36 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 31575 | 32357 |
| AEK07163.1 | JF704108_p62 | hypothetical protein | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44385 | 44576 |
| AEK07097.1 | JF704108_p60 | Erf | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43490 | 44251 |
| AEK07156.1 | JF704108_p126 | hypothetical protein | phrog_21310 | unknown function | unknown function | -1 | 74479 | 74709 |
| AEK07105.1 | JF704108_p74 | hypothetical protein | phrog_16637 | unknown function | unknown function | 1 | 50670 | 50918 |
| AEK07078.1 | JF704108_p35 | integrase | phrog_1 | integrase | integration and excision | 1 | 30267 | 31574 |
| AEK07068.1 | JF704108_p21 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 21667 | 22842 |
| AEK07060.1 | JF704108_p13 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 8990 | 9892 |
| AEK07142.1 | JF704108_p112 | hypothetical protein | phrog_4776 | unknown function | unknown function | -1 | 65539 | 66267 |
| AEK07071.1 | JF704108_p24 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 23413 | 24351 |
| AEK07127.1 | JF704108_p100 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 60975 | 61199 |
| AEK07067.1 | JF704108_p20 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 18979 | 21660 |
| AEK07080.1 | JF704108_p39 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 33310 | 33519 |
| AEK07169.1 | JF704108_p81 | hypothetical protein | phrog_12221 | unknown function | unknown function | 1 | 53443 | 53541 |
| AEK07134.1 | JF704108_p120 | hypothetical protein | phrog_6176 | unknown function | unknown function | 1 | 68991 | 69449 |
| AEK07048.1 | JF704108_p1 | hypothetical protein | phrog_7082 | unknown function | unknown function | 1 | 83 | 466 |
| AEK07089.1 | JF704108_p52 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 38699 | 40117 |
| AEK07052.1 | JF704108_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2626 | 4299 |
| AEK07108.1 | JF704108_p78 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 52575 | 52880 |
| AEK07114.1 | JF704108_p85 | hypothetical protein | phrog_17756 | unknown function | unknown function | 1 | 54757 | 55005 |
| AEK07075.1 | JF704108_p28 | holin | phrog_5807 | unknown function | unknown function | 1 | 27004 | 27258 |
| AEK07153.1 | JF704108_p31 | hypothetical protein | phrog_10321 | unknown function | unknown function | -1 | 28010 | 28216 |
| AEK07126.1 | JF704108_p99 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60625 | 60975 |
| AEK07151.1 | JF704108_p33 | hypothetical protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 29050 | 29478 |
| AEK07139.1 | JF704108_p115 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 67548 | 67928 |
| AEK07104.1 | JF704108_p73 | nicotinate phosphoribosyl transferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 49081 | 50556 |
| AEK07168.1 | JF704108_p77 | RusA | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52253 | 52627 |
| AEK07158.1 | JF704108_p41 | hypothetical protein | phrog_8707 | unknown function | unknown function | 1 | 33886 | 33996 |
| AEK07094.1 | JF704108_p57 | hypothetical protein | phrog_4160 | unknown function | unknown function | 1 | 41326 | 41742 |
| AEK07085.1 | JF704108_p46 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 36351 | 36668 |
| AEK07152.1 | JF704108_p32 | nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 28213 | 28959 |
| AEK07088.1 | JF704108_p51 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 38456 | 38689 |
| AEK07102.1 | JF704108_p70 | hypothetical protein | phrog_6624 | unknown function | unknown function | 1 | 47930 | 48112 |
| AEK07121.1 | JF704108_p93 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 58479 | 58721 |
| AEK07098.1 | JF704108_p63 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 44591 | 44959 |
| AEK07099.1 | JF704108_p64 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45013 | 45471 |
| AEK07106.1 | JF704108_p75 | kinase | phrog_505 | polynucleotide kinase | other | 1 | 50915 | 51835 |
| AEK07059.1 | JF704108_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8474 | 8962 |
| AEK07170.1 | JF704108_p89 | hypothetical protein | phrog_7890 | unknown function | unknown function | 1 | 57202 | 57309 |
| AEK07118.1 | JF704108_p90 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 57306 | 57590 |
| AEK07130.1 | JF704108_p103 | hypothetical protein | phrog_10290 | unknown function | unknown function | 1 | 61987 | 62151 |
| AEK07173.1 | JF704108_p125 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74272 | 74439 |
| AEK07166.1 | JF704108_p69 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 47722 | 47946 |
| AEK07049.1 | JF704108_p2 | hypothetical protein | phrog_1496 | terminase small subunit | head and packaging | 1 | 475 | 849 |
| AEK07072.1 | JF704108_p25 | lysin A | phrog_700 | endolysin | lysis | 1 | 24357 | 25529 |
| AEK07061.1 | JF704108_p15 | tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 9981 | 10283 |
| AEK07101.1 | JF704108_p68 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 46449 | 47714 |
| AEK07125.1 | JF704108_p97 | hypothetical protein | phrog_6821 | unknown function | unknown function | 1 | 60224 | 60430 |
| AEK07147.1 | JF704108_p107 | hypothetical protein | phrog_17448 | unknown function | unknown function | -1 | 64252 | 64476 |
| AEK07066.1 | JF704108_p19 | hypothetical protein | phrog_4413 | minor tail protein | tail | 1 | 18532 | 18978 |
| AEK07146.1 | JF704108_p108 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 64479 | 64619 |
| AEK07145.1 | JF704108_p109 | hypothetical protein | phrog_7382 | unknown function | unknown function | -1 | 64911 | 65207 |
| AEK07140.1 | JF704108_p114 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 66635 | 67477 |
| AEK07084.1 | JF704108_p45 | esterase | phrog_1649 | metallo-phosphoesterase | other | 1 | 35273 | 36361 |
| AEK07090.1 | JF704108_p53 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 40477 | 40749 |
| AEK07160.1 | JF704108_p47 | hypothetical protein | phrog_7316 | unknown function | unknown function | 1 | 36616 | 36813 |
| AEK07054.1 | JF704108_p7 | scaffold protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5430 | 6041 |
| AEK07091.1 | JF704108_p54 | hypothetical protein | phrog_20434 | unknown function | unknown function | 1 | 40746 | 40907 |
| AEK07057.1 | JF704108_p10 | hypothetical protein | phrog_5309 | head-tail adaptor | connector | 1 | 7711 | 8034 |
| AEK07135.1 | JF704108_p122 | ATPase | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 71528 | 72772 |
| AEK07065.1 | JF704108_p18 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 16738 | 18507 |
| AEK07122.1 | JF704108_p94 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 58718 | 59080 |
| AEK07148.1 | JF704108_p37 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 32508 | 32924 |
| AEK07110.1 | JF704108_p80 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 53208 | 53450 |
| AEK07161.1 | JF704108_p50 | hypothetical protein | phrog_38243 | unknown function | unknown function | 1 | 38272 | 38469 |
| AEK07081.1 | JF704108_p40 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 33516 | 33911 |
| AEK07082.1 | JF704108_p42 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 33993 | 34409 |
| AEK07069.1 | JF704108_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22855 | 23238 |
| AEK07141.1 | JF704108_p113 | hypothetical protein | phrog_6230 | unknown function | unknown function | -1 | 66378 | 66605 |
| AEK07058.1 | JF704108_p11 | hypothetical protein | phrog_5775 | head-tail connector protein | connector | 1 | 8034 | 8465 |
| AEK07116.1 | JF704108_p87 | hypothetical protein | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55436 | 56716 |
| AEK07111.1 | JF704108_p82 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 53532 | 54098 |
| AEK07123.1 | JF704108_p95 | DNA polymerase II | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 59077 | 59856 |
| AEK07074.1 | JF704108_p27 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 26561 | 27004 |
| AEK07077.1 | JF704108_p30 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 27672 | 27941 |
| AEK07051.1 | JF704108_p4 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1059 | 2636 |
| AEK07117.1 | JF704108_p88 | hypothetical protein | phrog_17990 | unknown function | unknown function | 1 | 56713 | 57201 |
| AEK07136.1 | JF704108_p119 | hypothetical protein | phrog_6968 | unknown function | unknown function | -1 | 68736 | 68930 |
| AEK07073.1 | JF704108_p26 | lysin B | phrog_102 | endolysin | lysis | 1 | 25529 | 26560 |
| AEK07154.1 | JF704108_p121 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 70432 | 71304 |
| AEK07164.1 | JF704108_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45499 | 45615 |
| AEK07087.1 | JF704108_p49 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 37878 | 38294 |
| AEK07119.1 | JF704108_p91 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 57580 | 57930 |
| AEK07050.1 | JF704108_p3 | hypothetical protein | phrog_6976 | unknown function | unknown function | 1 | 859 | 1053 |
| AEK07096.1 | JF704108_p59 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 42675 | 43493 |
| AEK07113.1 | JF704108_p84 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 54542 | 54760 |
| AEK07083.1 | JF704108_p44 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 34906 | 35271 |
| AEK07063.1 | JF704108_p16 | tapemeasure protein | phrog_3547 | tail length tape measure protein | tail | 1 | 10837 | 15768 |
| AEK07131.1 | JF704108_p104 | hypothetical protein | phrog_24455 | unknown function | unknown function | 1 | 62527 | 62835 |
| AEK07143.1 | JF704108_p111 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 65364 | 65537 |
| AEK07137.1 | JF704108_p118 | hypothetical protein | phrog_6004 | unknown function | unknown function | -1 | 68433 | 68696 |
| AEK07128.1 | JF704108_p101 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 61192 | 61311 |
| AEK07120.1 | JF704108_p92 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 57967 | 58377 |
| AEK07133.1 | JF704108_p106 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 63864 | 64208 |
| AEK07138.1 | JF704108_p116 | hypothetical protein | phrog_6224 | unknown function | unknown function | -1 | 67955 | 68188 |
| AEK07129.1 | JF704108_p102 | hypothetical protein | phrog_14116 | unknown function | unknown function | 1 | 61308 | 61562 |
| AEK07064.1 | JF704108_p17 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 15839 | 16738 |
| AEK07132.1 | JF704108_p105 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 63170 | 63877 |
| AEK07103.1 | JF704108_p72 | ribose phosphate kinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 48234 | 49091 |
| AEK07115.1 | JF704108_p86 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 55023 | 55436 |
| AEK07056.1 | JF704108_p9 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7247 | 7714 |
| AEK07055.1 | JF704108_p8 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 6085 | 7236 |
| AEK07150.1 | JF704108_p34 | hypothetical protein | phrog_33480 | unknown function | unknown function | -1 | 29527 | 29688 |
| AEK07162.1 | JF704108_p61 | hypothetical protein | phrog_18858 | unknown function | unknown function | 1 | 44251 | 44385 |
| AEK07172.1 | JF704108_p117 | hypothetical protein | phrog_7390 | unknown function | unknown function | -1 | 68154 | 68423 |
| AEK07144.1 | JF704108_p110 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65212 | 65352 |
| AEK07159.1 | JF704108_p43 | hypothetical protein | phrog_21835 | unknown function | unknown function | 1 | 34697 | 34834 |
| AEK07086.1 | JF704108_p48 | hypothetical protein | phrog_200 | lipoprotein | other | 1 | 36882 | 37778 |
| AEK07167.1 | JF704108_p71 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 48106 | 48249 |
| AEK07095.1 | JF704108_p58 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41762 | 42694 |
| AEK07155.1 | JF704108_p123 | hypothetical protein | phrog_7225 | unknown function | unknown function | -1 | 73251 | 73472 |
| AEK07070.1 | JF704108_p23 | hypothetical protein | phrog_17217 | unknown function | unknown function | 1 | 23247 | 23420 |
| AEK07092.1 | JF704108_p55 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 40908 | 41093 |
| AEK07062.1 | JF704108_p14 | tail assembly chaperone | phrog_2624 | tail assembly chaperone | tail | 1 | 9981 | 10807 |
| AEK07171.1 | JF704108_p98 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 60423 | 60590 |