| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF704113 |
Definition |
Mycobacterium phage UPIE, complete sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus. |
DB of origin |
PVOG |
Length |
73784 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
122 |
%GC |
58.79 |
Number of singletons |
1 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEK07563.1 | JF704113_p19 | hypothetical protein | phrog_4413 | minor tail protein | tail | 1 | 18548 | 18994 |
| AEK07577.1 | JF704113_p40 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 33326 | 33535 |
| AEK07632.1 | JF704113_p103 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 62175 | 62882 |
| AEK07636.1 | JF704113_p37 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 31591 | 32373 |
| AEK07661.1 | JF704113_p96 | endonuclease VII | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 59534 | 60094 |
| AEK07555.1 | JF704113_p11 | hypothetical protein | phrog_5775 | head-tail connector protein | connector | 1 | 8031 | 8462 |
| AEK07619.1 | JF704113_p85 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54803 | 56083 |
| AEK07620.1 | JF704113_p86 | hypothetical protein | phrog_17990 | unknown function | unknown function | 1 | 56080 | 56568 |
| AEK07649.1 | JF704113_p113 | hypothetical protein | phrog_6224 | unknown function | unknown function | -1 | 66681 | 66890 |
| AEK07604.1 | JF704113_p70 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 47652 | 47795 |
| AEK07570.1 | JF704113_p26 | lysin B | phrog_102 | endolysin | lysis | 1 | 25545 | 26576 |
| AEK07666.1 | JF704113_p122 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73054 | 73452 |
| AEK07594.1 | JF704113_p60 | hypothetical protein | phrog_1123 | unknown function | unknown function | 1 | 42689 | 43036 |
| AEK07551.1 | JF704113_p7 | scaffold protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5400 | 6038 |
| AEK07658.1 | JF704113_p41 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 33532 | 33927 |
| AEK07610.1 | JF704113_p76 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51581 | 51994 |
| AEK07557.1 | JF704113_p13 | major tail protein | phrog_476 | major tail protein | tail | 1 | 8987 | 9889 |
| AEK07654.1 | JF704113_p120 | hypothetical protein | phrog_7225 | unknown function | unknown function | -1 | 72080 | 72301 |
| AEK07560.1 | JF704113_p16 | tapemeasure protein | phrog_3547 | tail length tape measure protein | tail | 1 | 10834 | 15774 |
| AEK07611.1 | JF704113_p77 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 52017 | 52247 |
| AEK07612.1 | JF704113_p78 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 52250 | 52585 |
| AEK07598.1 | JF704113_p64 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 44137 | 44505 |
| AEK07592.1 | JF704113_p58 | hypothetical protein | phrog_4160 | unknown function | unknown function | 1 | 41340 | 41756 |
| AEK07549.1 | JF704113_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2626 | 4296 |
| AEK07601.1 | JF704113_p67 | DnaC | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 45995 | 47260 |
| AEK07662.1 | JF704113_p95 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 59398 | 59571 |
| AEK07625.1 | JF704113_p92 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 58049 | 58411 |
| AEK07641.1 | JF704113_p105 | hypothetical protein | phrog_17448 | unknown function | unknown function | -1 | 63257 | 63553 |
| AEK07550.1 | JF704113_p6 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 4318 | 5373 |
| AEK07546.1 | JF704113_p2 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 475 | 849 |
| AEK07574.1 | JF704113_p30 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 27688 | 27957 |
| AEK07591.1 | JF704113_p57 | hypothetical protein | phrog_18302 | unknown function | unknown function | 1 | 41100 | 41282 |
| AEK07614.1 | JF704113_p80 | ssDNA binding protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 52899 | 53465 |
| AEK07644.1 | JF704113_p108 | hypothetical protein | phrog_4776 | unknown function | unknown function | -1 | 64141 | 64878 |
| AEK07663.1 | JF704113_p97 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60066 | 60488 |
| AEK07554.1 | JF704113_p10 | hypothetical protein | phrog_5309 | head-tail adaptor | connector | 1 | 7708 | 8031 |
| AEK07559.1 | JF704113_p14 | tail assembly chaperone | phrog_2624 | tail assembly chaperone | tail | 1 | 9978 | 10804 |
| AEK07626.1 | JF704113_p93 | DnaQ | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 58408 | 59187 |
| AEK07581.1 | JF704113_p46 | hypothetical protein | phrog_1649 | metallo-phosphoesterase | other | 1 | 35289 | 36377 |
| AEK07595.1 | JF704113_p61 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43033 | 43794 |
| AEK07573.1 | JF704113_p29 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 27278 | 27697 |
| AEK07558.1 | JF704113_p15 | tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 9978 | 10280 |
| AEK07617.1 | JF704113_p83 | hypothetical protein | phrog_17756 | unknown function | unknown function | 1 | 54124 | 54372 |
| AEK07646.1 | JF704113_p110 | hypothetical protein | phrog_6230 | unknown function | unknown function | -1 | 65104 | 65331 |
| AEK07609.1 | JF704113_p75 | hypothetical protein | phrog_6064 | unknown function | unknown function | 1 | 51368 | 51580 |
| AEK07562.1 | JF704113_p18 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 16744 | 18513 |
| AEK07615.1 | JF704113_p81 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 53458 | 53841 |
| AEK07566.1 | JF704113_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22907 | 23254 |
| AEK07623.1 | JF704113_p90 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 57298 | 57708 |
| AEK07575.1 | JF704113_p36 | tyrosine integrase | phrog_1 | integrase | integration and excision | 1 | 30283 | 31590 |
| AEK07589.1 | JF704113_p55 | hypothetical protein | phrog_20434 | unknown function | unknown function | 1 | 40761 | 40925 |
| AEK07579.1 | JF704113_p44 | hypothetical protein | phrog_21835 | unknown function | unknown function | 1 | 34713 | 34850 |
| AEK07569.1 | JF704113_p25 | lysin A | phrog_700 | endolysin | lysis | 1 | 24373 | 25545 |
| AEK07580.1 | JF704113_p45 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 34922 | 35287 |
| AEK07660.1 | JF704113_p87 | hypothetical protein | phrog_7890 | unknown function | unknown function | 1 | 56569 | 56676 |
| AEK07593.1 | JF704113_p59 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41776 | 42708 |
| AEK07643.1 | JF704113_p107 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 63966 | 64139 |
| AEK07634.1 | JF704113_p117 | hypothetical protein | phrog_6176 | unknown function | unknown function | 1 | 67717 | 68175 |
| AEK07556.1 | JF704113_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8471 | 8959 |
| AEK07578.1 | JF704113_p43 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 34009 | 34425 |
| AEK07647.1 | JF704113_p111 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 65361 | 66203 |
| AEK07565.1 | JF704113_p21 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 21683 | 22858 |
| AEK07608.1 | JF704113_p74 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 50448 | 51368 |
| AEK07548.1 | JF704113_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1059 | 2636 |
| AEK07553.1 | JF704113_p9 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7271 | 7711 |
| AEK07606.1 | JF704113_p72 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 48628 | 50103 |
| AEK07637.1 | JF704113_p34 | hypothetical protein | phrog_12168 | unknown function | unknown function | -1 | 29487 | 29735 |
| AEK07572.1 | JF704113_p28 | hypothetical protein | phrog_5807 | unknown function | unknown function | 1 | 27020 | 27274 |
| AEK07652.1 | JF704113_p118 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 69130 | 70176 |
| AEK07585.1 | JF704113_p50 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 37893 | 38309 |
| AEK07564.1 | JF704113_p20 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 18995 | 21676 |
| AEK07642.1 | JF704113_p106 | hypothetical protein | phrog_7382 | unknown function | unknown function | -1 | 63658 | 63954 |
| AEK07561.1 | JF704113_p17 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 15845 | 16744 |
| AEK07651.1 | JF704113_p116 | hypothetical protein | phrog_6968 | unknown function | unknown function | -1 | 67462 | 67656 |
| AEK07567.1 | JF704113_p23 | hypothetical protein | phrog_17217 | unknown function | unknown function | 1 | 23263 | 23436 |
| AEK07545.1 | JF704113_p1 | hypothetical protein | phrog_7082 | unknown function | unknown function | 1 | 83 | 466 |
| AEK07664.1 | JF704113_p101 | hypothetical protein | phrog_17151 | unknown function | unknown function | 1 | 61126 | 61215 |
| AEK07596.1 | JF704113_p62 | hypothetical protein | phrog_18858 | unknown function | unknown function | 1 | 43794 | 43931 |
| AEK07638.1 | JF704113_p33 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 29066 | 29494 |
| AEK07659.1 | JF704113_p51 | hypothetical protein | phrog_22974 | unknown function | unknown function | 1 | 38371 | 38484 |
| AEK07629.1 | JF704113_p99 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 60705 | 60824 |
| AEK07630.1 | JF704113_p100 | hypothetical protein | phrog_6800 | unknown function | unknown function | 1 | 61001 | 61126 |
| AEK07618.1 | JF704113_p84 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 54390 | 54803 |
| AEK07602.1 | JF704113_p68 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 47268 | 47492 |
| AEK07635.1 | JF704113_p38 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 32524 | 32940 |
| AEK07650.1 | JF704113_p115 | hypothetical protein | phrog_6004 | unknown function | unknown function | -1 | 67159 | 67422 |
| AEK07653.1 | JF704113_p119 | AAA ATPase | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 70226 | 71470 |
| AEK07640.1 | JF704113_p31 | hypothetical protein | phrog_10321 | unknown function | unknown function | -1 | 28026 | 28232 |
| AEK07588.1 | JF704113_p54 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 40492 | 40764 |
| AEK07571.1 | JF704113_p27 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 26577 | 27020 |
| AEK07631.1 | JF704113_p102 | hypothetical protein | phrog_10290 | unknown function | unknown function | 1 | 61385 | 61549 |
| AEK07639.1 | JF704113_p32 | NrdC | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 28229 | 28975 |
| AEK07665.1 | JF704113_p114 | hypothetical protein | phrog_7390 | unknown function | unknown function | -1 | 66880 | 67071 |
| AEK07583.1 | JF704113_p48 | hypothetical protein | phrog_7316 | unknown function | unknown function | 1 | 36644 | 36829 |
| AEK07616.1 | JF704113_p82 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 53933 | 54127 |
| AEK07552.1 | JF704113_p8 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 6082 | 7233 |
| AEK07613.1 | JF704113_p79 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 52575 | 52817 |
| AEK07607.1 | JF704113_p73 | hypothetical protein | phrog_16637 | unknown function | unknown function | 1 | 50203 | 50451 |
| AEK07603.1 | JF704113_p69 | hypothetical protein | phrog_31285 | unknown function | unknown function | 1 | 47545 | 47658 |
| AEK07605.1 | JF704113_p71 | phosphoribosyl pyrophosphate synthetase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 47780 | 48631 |
| AEK07568.1 | JF704113_p24 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 23429 | 24367 |
| AEK07648.1 | JF704113_p112 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 66274 | 66654 |
| AEK07597.1 | JF704113_p63 | hypothetical protein | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43931 | 44122 |
| AEK07628.1 | JF704113_p98 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 60488 | 60712 |
| AEK07599.1 | JF704113_p65 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44559 | 45017 |
| AEK07655.1 | JF704113_p121 | hypothetical protein | phrog_7398 | unknown function | unknown function | -1 | 72403 | 72915 |
| AEK07576.1 | JF704113_p39 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 33006 | 33329 |
| AEK07584.1 | JF704113_p49 | hypothetical protein | phrog_200 | lipoprotein | other | 1 | 36898 | 37794 |
| AEK07590.1 | JF704113_p56 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 40922 | 41107 |
| AEK07624.1 | JF704113_p91 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 57813 | 58052 |
| AEK07587.1 | JF704113_p53 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 38714 | 40132 |
| AEK07582.1 | JF704113_p47 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 36367 | 36684 |
| AEK07657.1 | JF704113_p42 | hypothetical protein | phrog_8707 | unknown function | unknown function | 1 | 33902 | 34012 |
| AEK07656.1 | JF704113_p35 | hypothetical protein | phrog_26605 | unknown function | unknown function | -1 | 29842 | 30081 |
| AEK07547.1 | JF704113_p3 | hypothetical protein | phrog_6976 | unknown function | unknown function | 1 | 862 | 1053 |
| AEK07627.1 | JF704113_p94 | hypothetical protein | phrog_6821 | unknown function | unknown function | 1 | 59184 | 59405 |
| AEK07633.1 | JF704113_p104 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 62917 | 63213 |
| AEK07621.1 | JF704113_p88 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 56673 | 56921 |
| AEK07622.1 | JF704113_p89 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 56908 | 57261 |
| AEK07600.1 | JF704113_p66 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 45321 | 45998 |
| AEK07586.1 | JF704113_p52 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 38471 | 38704 |
| AEK07645.1 | JF704113_p109 | hypothetical protein | phrog_20355 | unknown function | unknown function | -1 | 64895 | 65104 |