Genomic map of Mycobacterium phage UPIE (JF704113)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JF704113
Definition
Mycobacterium phage UPIE, complete sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus.
DB of origin
PVOG
Length
73784
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
122
%GC
58.79
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEK07563.1 JF704113_p19 hypothetical protein phrog_4413 minor tail protein tail 1 18548 18994
AEK07577.1 JF704113_p40 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 33326 33535
AEK07632.1 JF704113_p103 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 62175 62882
AEK07636.1 JF704113_p37 hypothetical protein phrog_950 unknown function unknown function -1 31591 32373
AEK07661.1 JF704113_p96 endonuclease VII phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism 1 59534 60094
AEK07555.1 JF704113_p11 hypothetical protein phrog_5775 head-tail connector protein connector 1 8031 8462
AEK07619.1 JF704113_p85 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 54803 56083
AEK07620.1 JF704113_p86 hypothetical protein phrog_17990 unknown function unknown function 1 56080 56568
AEK07649.1 JF704113_p113 hypothetical protein phrog_6224 unknown function unknown function -1 66681 66890
AEK07604.1 JF704113_p70 hypothetical protein phrog_6206 unknown function unknown function 1 47652 47795
AEK07570.1 JF704113_p26 lysin B phrog_102 endolysin lysis 1 25545 26576
AEK07666.1 JF704113_p122 hypothetical protein singleton unknown function unknown function 1 73054 73452
AEK07594.1 JF704113_p60 hypothetical protein phrog_1123 unknown function unknown function 1 42689 43036
AEK07551.1 JF704113_p7 scaffold protein phrog_3760 head scaffolding protein head and packaging 1 5400 6038
AEK07658.1 JF704113_p41 hypothetical protein phrog_762 unknown function unknown function 1 33532 33927
AEK07610.1 JF704113_p76 hypothetical protein phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 51581 51994
AEK07557.1 JF704113_p13 major tail protein phrog_476 major tail protein tail 1 8987 9889
AEK07654.1 JF704113_p120 hypothetical protein phrog_7225 unknown function unknown function -1 72080 72301
AEK07560.1 JF704113_p16 tapemeasure protein phrog_3547 tail length tape measure protein tail 1 10834 15774
AEK07611.1 JF704113_p77 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 52017 52247
AEK07612.1 JF704113_p78 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 52250 52585
AEK07598.1 JF704113_p64 hypothetical protein phrog_1389 unknown function unknown function 1 44137 44505
AEK07592.1 JF704113_p58 hypothetical protein phrog_4160 unknown function unknown function 1 41340 41756
AEK07549.1 JF704113_p5 portal protein phrog_104 portal protein head and packaging 1 2626 4296
AEK07601.1 JF704113_p67 DnaC phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 45995 47260
AEK07662.1 JF704113_p95 hypothetical protein phrog_2057 unknown function unknown function 1 59398 59571
AEK07625.1 JF704113_p92 hypothetical protein phrog_4472 nucleotide kinase other 1 58049 58411
AEK07641.1 JF704113_p105 hypothetical protein phrog_17448 unknown function unknown function -1 63257 63553
AEK07550.1 JF704113_p6 hypothetical protein phrog_193 head maturation protease head and packaging 1 4318 5373
AEK07546.1 JF704113_p2 terminase small subunit phrog_1496 terminase small subunit head and packaging 1 475 849
AEK07574.1 JF704113_p30 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 27688 27957
AEK07591.1 JF704113_p57 hypothetical protein phrog_18302 unknown function unknown function 1 41100 41282
AEK07614.1 JF704113_p80 ssDNA binding protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 52899 53465
AEK07644.1 JF704113_p108 hypothetical protein phrog_4776 unknown function unknown function -1 64141 64878
AEK07663.1 JF704113_p97 hypothetical protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 60066 60488
AEK07554.1 JF704113_p10 hypothetical protein phrog_5309 head-tail adaptor connector 1 7708 8031
AEK07559.1 JF704113_p14 tail assembly chaperone phrog_2624 tail assembly chaperone tail 1 9978 10804
AEK07626.1 JF704113_p93 DnaQ phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 58408 59187
AEK07581.1 JF704113_p46 hypothetical protein phrog_1649 metallo-phosphoesterase other 1 35289 36377
AEK07595.1 JF704113_p61 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 43033 43794
AEK07573.1 JF704113_p29 hypothetical protein phrog_726 unknown function unknown function 1 27278 27697
AEK07558.1 JF704113_p15 tail assembly chaperone phrog_4464 tail assembly chaperone tail 1 9978 10280
AEK07617.1 JF704113_p83 hypothetical protein phrog_17756 unknown function unknown function 1 54124 54372
AEK07646.1 JF704113_p110 hypothetical protein phrog_6230 unknown function unknown function -1 65104 65331
AEK07609.1 JF704113_p75 hypothetical protein phrog_6064 unknown function unknown function 1 51368 51580
AEK07562.1 JF704113_p18 minor tail subunit phrog_110 minor tail protein tail 1 16744 18513
AEK07615.1 JF704113_p81 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 53458 53841
AEK07566.1 JF704113_p22 hypothetical protein phrog_240 head protein head and packaging 1 22907 23254
AEK07623.1 JF704113_p90 HNH endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 57298 57708
AEK07575.1 JF704113_p36 tyrosine integrase phrog_1 integrase integration and excision 1 30283 31590
AEK07589.1 JF704113_p55 hypothetical protein phrog_20434 unknown function unknown function 1 40761 40925
AEK07579.1 JF704113_p44 hypothetical protein phrog_21835 unknown function unknown function 1 34713 34850
AEK07569.1 JF704113_p25 lysin A phrog_700 endolysin lysis 1 24373 25545
AEK07580.1 JF704113_p45 hypothetical protein phrog_5916 unknown function unknown function 1 34922 35287
AEK07660.1 JF704113_p87 hypothetical protein phrog_7890 unknown function unknown function 1 56569 56676
AEK07593.1 JF704113_p59 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 41776 42708
AEK07643.1 JF704113_p107 hypothetical protein phrog_2869 unknown function unknown function -1 63966 64139
AEK07634.1 JF704113_p117 hypothetical protein phrog_6176 unknown function unknown function 1 67717 68175
AEK07556.1 JF704113_p12 hypothetical protein phrog_123 tail terminator connector 1 8471 8959
AEK07578.1 JF704113_p43 hypothetical protein phrog_572 unknown function unknown function 1 34009 34425
AEK07647.1 JF704113_p111 hypothetical protein phrog_1909 unknown function unknown function -1 65361 66203
AEK07565.1 JF704113_p21 hypothetical protein phrog_416 minor tail protein tail 1 21683 22858
AEK07608.1 JF704113_p74 polynucleotide kinase phrog_505 polynucleotide kinase other 1 50448 51368
AEK07548.1 JF704113_p4 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1059 2636
AEK07553.1 JF704113_p9 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 7271 7711
AEK07606.1 JF704113_p72 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 48628 50103
AEK07637.1 JF704113_p34 hypothetical protein phrog_12168 unknown function unknown function -1 29487 29735
AEK07572.1 JF704113_p28 hypothetical protein phrog_5807 unknown function unknown function 1 27020 27274
AEK07652.1 JF704113_p118 hypothetical protein phrog_1909 unknown function unknown function -1 69130 70176
AEK07585.1 JF704113_p50 hypothetical protein phrog_4870 unknown function unknown function 1 37893 38309
AEK07564.1 JF704113_p20 hypothetical protein phrog_346 minor tail protein tail 1 18995 21676
AEK07642.1 JF704113_p106 hypothetical protein phrog_7382 unknown function unknown function -1 63658 63954
AEK07561.1 JF704113_p17 minor tail subunit phrog_106 minor tail protein tail 1 15845 16744
AEK07651.1 JF704113_p116 hypothetical protein phrog_6968 unknown function unknown function -1 67462 67656
AEK07567.1 JF704113_p23 hypothetical protein phrog_17217 unknown function unknown function 1 23263 23436
AEK07545.1 JF704113_p1 hypothetical protein phrog_7082 unknown function unknown function 1 83 466
AEK07664.1 JF704113_p101 hypothetical protein phrog_17151 unknown function unknown function 1 61126 61215
AEK07596.1 JF704113_p62 hypothetical protein phrog_18858 unknown function unknown function 1 43794 43931
AEK07638.1 JF704113_p33 Lsr2 phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 29066 29494
AEK07659.1 JF704113_p51 hypothetical protein phrog_22974 unknown function unknown function 1 38371 38484
AEK07629.1 JF704113_p99 hypothetical protein phrog_6027 unknown function unknown function 1 60705 60824
AEK07630.1 JF704113_p100 hypothetical protein phrog_6800 unknown function unknown function 1 61001 61126
AEK07618.1 JF704113_p84 hypothetical protein phrog_289 GTP-binding domain other 1 54390 54803
AEK07602.1 JF704113_p68 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 47268 47492
AEK07635.1 JF704113_p38 hypothetical protein phrog_1746 transcriptional repressor transcription regulation -1 32524 32940
AEK07650.1 JF704113_p115 hypothetical protein phrog_6004 unknown function unknown function -1 67159 67422
AEK07653.1 JF704113_p119 AAA ATPase phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover -1 70226 71470
AEK07640.1 JF704113_p31 hypothetical protein phrog_10321 unknown function unknown function -1 28026 28232
AEK07588.1 JF704113_p54 hypothetical protein phrog_5872 unknown function unknown function 1 40492 40764
AEK07571.1 JF704113_p27 hypothetical protein phrog_5963 holin lysis 1 26577 27020
AEK07631.1 JF704113_p102 hypothetical protein phrog_10290 unknown function unknown function 1 61385 61549
AEK07639.1 JF704113_p32 NrdC phrog_388 nucleotidyltransferase DNA, RNA and nucleotide metabolism -1 28229 28975
AEK07665.1 JF704113_p114 hypothetical protein phrog_7390 unknown function unknown function -1 66880 67071
AEK07583.1 JF704113_p48 hypothetical protein phrog_7316 unknown function unknown function 1 36644 36829
AEK07616.1 JF704113_p82 hypothetical protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 53933 54127
AEK07552.1 JF704113_p8 major capsid protein phrog_283 major head protein head and packaging 1 6082 7233
AEK07613.1 JF704113_p79 hypothetical protein phrog_1941 unknown function unknown function 1 52575 52817
AEK07607.1 JF704113_p73 hypothetical protein phrog_16637 unknown function unknown function 1 50203 50451
AEK07603.1 JF704113_p69 hypothetical protein phrog_31285 unknown function unknown function 1 47545 47658
AEK07605.1 JF704113_p71 phosphoribosyl pyrophosphate synthetase phrog_619 ribose-phosphate pyrophosphokinase other 1 47780 48631
AEK07568.1 JF704113_p24 hypothetical protein phrog_3856 minor tail protein tail 1 23429 24367
AEK07648.1 JF704113_p112 hypothetical protein phrog_3777 unknown function unknown function -1 66274 66654
AEK07597.1 JF704113_p63 hypothetical protein phrog_5917 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 43931 44122
AEK07628.1 JF704113_p98 hypothetical protein phrog_3699 unknown function unknown function 1 60488 60712
AEK07599.1 JF704113_p65 hypothetical protein phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44559 45017
AEK07655.1 JF704113_p121 hypothetical protein phrog_7398 unknown function unknown function -1 72403 72915
AEK07576.1 JF704113_p39 hypothetical protein phrog_1702 transcriptional repressor transcription regulation 1 33006 33329
AEK07584.1 JF704113_p49 hypothetical protein phrog_200 lipoprotein other 1 36898 37794
AEK07590.1 JF704113_p56 hypothetical protein phrog_5858 unknown function unknown function 1 40922 41107
AEK07624.1 JF704113_p91 hypothetical protein phrog_1042 unknown function unknown function 1 57813 58052
AEK07587.1 JF704113_p53 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 38714 40132
AEK07582.1 JF704113_p47 hypothetical protein phrog_6017 unknown function unknown function 1 36367 36684
AEK07657.1 JF704113_p42 hypothetical protein phrog_8707 unknown function unknown function 1 33902 34012
AEK07656.1 JF704113_p35 hypothetical protein phrog_26605 unknown function unknown function -1 29842 30081
AEK07547.1 JF704113_p3 hypothetical protein phrog_6976 unknown function unknown function 1 862 1053
AEK07627.1 JF704113_p94 hypothetical protein phrog_6821 unknown function unknown function 1 59184 59405
AEK07633.1 JF704113_p104 hypothetical protein phrog_6170 unknown function unknown function 1 62917 63213
AEK07621.1 JF704113_p88 hypothetical protein phrog_2218 unknown function unknown function 1 56673 56921
AEK07622.1 JF704113_p89 hypothetical protein phrog_1969 unknown function unknown function 1 56908 57261
AEK07600.1 JF704113_p66 hypothetical protein phrog_1882 unknown function unknown function 1 45321 45998
AEK07586.1 JF704113_p52 hypothetical protein phrog_1673 unknown function unknown function 1 38471 38704
AEK07645.1 JF704113_p109 hypothetical protein phrog_20355 unknown function unknown function -1 64895 65104