| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF704115 |
Definition |
Mycobacterium phage Yoshi, complete sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
PVOG |
Length |
58714 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
116 |
%GC |
61.02 |
Number of singletons |
7 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEK07830.1 | JF704115_p80 | hypothetical protein | phrog_34275 | unknown function | unknown function | 1 | 44357 | 44515 |
| AEK07827.1 | JF704115_p77 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 42854 | 43129 |
| AEK07791.1 | JF704115_p40 | hypothetical protein | phrog_4511 | unknown function | unknown function | 1 | 28571 | 28864 |
| AEK07835.1 | JF704115_p86 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 46688 | 46834 |
| AEK07867.1 | JF704115_p96 | hypothetical protein | phrog_19489 | unknown function | unknown function | 1 | 50613 | 50858 |
| AEK07798.1 | JF704115_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30767 | 31003 |
| AEK07804.1 | JF704115_p53 | hypothetical protein | phrog_13315 | unknown function | unknown function | -1 | 32307 | 32912 |
| AEK07781.1 | JF704115_p30 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 24520 | 24669 |
| AEK07784.1 | JF704115_p33 | hypothetical protein | phrog_2864 | unknown function | unknown function | 1 | 24948 | 25109 |
| AEK07774.1 | JF704115_p23 | hypothetical protein | phrog_18521 | minor tail protein | tail | 1 | 16394 | 17095 |
| AEK07854.1 | JF704115_p107 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 54303 | 54470 |
| AEK07816.2 | JF704115_p66 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 39702 | 39983 |
| AEK07856.1 | JF704115_p109 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54720 | 54851 |
| AEK07778.1 | JF704115_p27 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 23473 | 23904 |
| AEK07775.1 | JF704115_p24 | structural protein | phrog_346 | minor tail protein | tail | 1 | 17092 | 19641 |
| AEK07757.1 | JF704115_p6 | scaffolding protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 4306 | 4854 |
| AEK07780.1 | JF704115_p29 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 24217 | 24513 |
| AEK07859.1 | JF704115_p112 | AlpA-like transcriptional regulator | phrog_3813 | unknown function | unknown function | 1 | 55370 | 55627 |
| AEK07814.1 | JF704115_p64 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 38747 | 38995 |
| AEK07785.1 | JF704115_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25106 | 25258 |
| AEK07836.1 | JF704115_p87 | HNH endonuclease domain protein | phrog_14314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46834 | 47673 |
| AEK07862.1 | JF704115_p115 | galactosyl transferase | phrog_1721 | galactosyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 57309 | 58004 |
| AEK07839.1 | JF704115_p90 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 48828 | 49208 |
| AEK07838.1 | JF704115_p89 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 48568 | 48831 |
| AEK07822.1 | JF704115_p72 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 41696 | 41974 |
| AEK07754.1 | JF704115_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 663 | 2183 |
| AEK07794.1 | JF704115_p43 | hypothetical protein | phrog_8497 | unknown function | unknown function | -1 | 29673 | 29960 |
| AEK07806.1 | JF704115_p55 | hypothetical protein | phrog_16880 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 34225 | 34653 |
| AEK07831.1 | JF704115_p82 | hypothetical protein | phrog_6573 | unknown function | unknown function | 1 | 44871 | 44972 |
| AEK07759.1 | JF704115_p8 | hypothetical protein | phrog_14967 | unknown function | unknown function | 1 | 5824 | 5967 |
| AEK07787.1 | JF704115_p36 | hypothetical protein | phrog_3888 | unknown function | unknown function | 1 | 25524 | 25847 |
| AEK07829.1 | JF704115_p79 | AAA ATPase | phrog_1366 | unknown function | unknown function | 1 | 43479 | 44360 |
| AEK07818.1 | JF704115_p68 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40172 | 40510 |
| AEK07845.1 | JF704115_p98 | hypothetical protein | phrog_15080 | unknown function | unknown function | 1 | 51196 | 51378 |
| AEK07849.1 | JF704115_p102 | hypothetical protein | phrog_4334 | unknown function | unknown function | 1 | 52079 | 52576 |
| AEK07758.1 | JF704115_p7 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4877 | 5812 |
| AEK07843.1 | JF704115_p95 | hypothetical protein | phrog_24020 | unknown function | unknown function | 1 | 50467 | 50616 |
| AEK07848.1 | JF704115_p101 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 51721 | 52092 |
| AEK07782.1 | JF704115_p31 | hypothetical protein | phrog_13008 | unknown function | unknown function | 1 | 24666 | 24806 |
| AEK07864.1 | JF704115_p57 | hypothetical protein | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 35455 | 35913 |
| AEK07850.1 | JF704115_p103 | hypothetical protein | phrog_20643 | unknown function | unknown function | 1 | 52689 | 52988 |
| AEK07792.1 | JF704115_p41 | hypothetical protein | phrog_6071 | unknown function | unknown function | 1 | 28866 | 29099 |
| AEK07866.1 | JF704115_p92 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 49392 | 49736 |
| AEK07837.1 | JF704115_p88 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 47666 | 48568 |
| AEK07834.1 | JF704115_p85 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 45264 | 46691 |
| AEK07760.1 | JF704115_p9 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 5985 | 6440 |
| AEK07803.1 | JF704115_p52 | hypothetical protein | phrog_6131 | unknown function | unknown function | -1 | 32093 | 32293 |
| AEK07786.1 | JF704115_p35 | hypothetical protein | phrog_7196 | unknown function | unknown function | 1 | 25258 | 25455 |
| AEK07805.1 | JF704115_p54 | integrase | phrog_1 | integrase | integration and excision | -1 | 32954 | 34225 |
| AEK07807.1 | JF704115_p56 | hypothetical protein | phrog_24720 | unknown function | unknown function | 1 | 35122 | 35538 |
| AEK07860.1 | JF704115_p113 | hypothetical protein | phrog_17545 | unknown function | unknown function | -1 | 55624 | 56025 |
| AEK07811.1 | JF704115_p61 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 38120 | 38299 |
| AEK07813.1 | JF704115_p63 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 38592 | 38750 |
| AEK07844.1 | JF704115_p97 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 50855 | 51199 |
| AEK07826.1 | JF704115_p76 | hypothetical protein | phrog_11976 | unknown function | unknown function | 1 | 42715 | 42861 |
| AEK07833.1 | JF704115_p84 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 45121 | 45270 |
| AEK07861.1 | JF704115_p114 | glycosyl transferase | phrog_8858 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56128 | 57312 |
| AEK07846.1 | JF704115_p99 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51375 | 51554 |
| AEK07800.1 | JF704115_p49 | hypothetical protein | phrog_14625 | unknown function | unknown function | -1 | 31259 | 31381 |
| AEK07796.1 | JF704115_p45 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 30160 | 30501 |
| AEK07762.1 | JF704115_p11 | hypothetical protein | phrog_16796 | unknown function | unknown function | 1 | 6787 | 6963 |
| AEK07823.1 | JF704115_p73 | HTH DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41971 | 42333 |
| AEK07783.1 | JF704115_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24806 | 24943 |
| AEK07788.1 | JF704115_p37 | lysin A | phrog_700 | endolysin | lysis | 1 | 25847 | 27094 |
| AEK07799.1 | JF704115_p48 | hypothetical protein | phrog_12593 | unknown function | unknown function | -1 | 31032 | 31262 |
| AEK07763.1 | JF704115_p12 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6947 | 7219 |
| AEK07793.1 | JF704115_p42 | hypothetical protein | phrog_3798 | unknown function | unknown function | 1 | 29099 | 29485 |
| AEK07812.1 | JF704115_p62 | hypothetical protein | phrog_9588 | unknown function | unknown function | 1 | 38296 | 38565 |
| AEK07766.1 | JF704115_p16 | tail assembly chaperone | phrog_16781 | tail assembly chaperone | tail | 1 | 8370 | 8981 |
| AEK07851.1 | JF704115_p104 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 52981 | 53250 |
| AEK07768.1 | JF704115_p17 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 9264 | 12815 |
| AEK07841.1 | JF704115_p93 | hypothetical protein | phrog_27404 | unknown function | unknown function | 1 | 49733 | 49918 |
| AEK07770.1 | JF704115_p19 | structural protein | phrog_110 | minor tail protein | tail | 1 | 13743 | 15407 |
| AEK07789.1 | JF704115_p38 | lysin B | phrog_102 | endolysin | lysis | 1 | 27091 | 28161 |
| AEK07840.1 | JF704115_p91 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 49208 | 49408 |
| AEK07795.1 | JF704115_p44 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 29960 | 30151 |
| AEK07776.1 | JF704115_p25 | structural protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19638 | 22460 |
| AEK07832.1 | JF704115_p83 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 44969 | 45124 |
| AEK07801.1 | JF704115_p50 | hypothetical protein | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31363 | 31554 |
| AEK07863.1 | JF704115_p116 | glycosyl transferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 58001 | 58603 |
| AEK07773.1 | JF704115_p22 | hypothetical protein | phrog_17345 | minor tail protein | tail | 1 | 16089 | 16397 |
| AEK07761.1 | JF704115_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6437 | 6790 |
| AEK07828.1 | JF704115_p78 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 43126 | 43482 |
| AEK07755.1 | JF704115_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2180 | 3604 |
| AEK07797.1 | JF704115_p46 | hypothetical protein | phrog_35396 | unknown function | unknown function | -1 | 30570 | 30767 |
| AEK07865.1 | JF704115_p81 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44512 | 44874 |
| AEK07802.1 | JF704115_p51 | hypothetical protein | phrog_17260 | unknown function | unknown function | -1 | 31551 | 32033 |
| AEK07857.1 | JF704115_p110 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 54848 | 55144 |
| AEK07767.1 | JF704115_p15 | tail assembly chaperone | phrog_21995 | tail assembly chaperone | tail | 1 | 8370 | 9271 |
| AEK07847.1 | JF704115_p100 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51536 | 51667 |
| AEK07819.1 | JF704115_p69 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 40511 | 41005 |
| AEK07808.1 | JF704115_p58 | hypothetical protein | phrog_3642 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36087 | 36389 |
| AEK07769.1 | JF704115_p18 | structural protein | phrog_106 | minor tail protein | tail | 1 | 12812 | 13741 |
| AEK07824.1 | JF704115_p74 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 42330 | 42488 |
| AEK07809.1 | JF704115_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36386 | 36787 |
| AEK07855.1 | JF704115_p108 | hypothetical protein | phrog_6481 | unknown function | unknown function | 1 | 54478 | 54699 |
| AEK07777.1 | JF704115_p26 | structural protein | phrog_553 | minor tail protein | tail | 1 | 22460 | 23407 |
| AEK07771.1 | JF704115_p20 | hypothetical protein | phrog_8122 | minor tail protein | tail | 1 | 15407 | 15772 |
| AEK07821.1 | JF704115_p71 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41346 | 41699 |
| AEK07853.1 | JF704115_p106 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53903 | 54172 |
| AEK07815.1 | JF704115_p65 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 38992 | 39624 |
| AEK07817.1 | JF704115_p67 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 39980 | 40168 |
| AEK07852.1 | JF704115_p105 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 53247 | 53906 |
| AEK07756.1 | JF704115_p5 | protease | phrog_193 | head maturation protease | head and packaging | 1 | 3585 | 4229 |
| AEK07858.1 | JF704115_p111 | hypothetical protein | phrog_26794 | unknown function | unknown function | 1 | 55144 | 55362 |
| AEK07765.1 | JF704115_p14 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 7678 | 8271 |
| AEK07772.1 | JF704115_p21 | hypothetical protein | phrog_17043 | minor tail protein | tail | 1 | 15769 | 16092 |
| AEK07752.1 | JF704115_p1 | HNH endonuclease domain protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38 | 370 |
| AEK07842.1 | JF704115_p94 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 49980 | 50474 |
| AEK07790.1 | JF704115_p39 | hypothetical protein | phrog_443 | holin | lysis | 1 | 28311 | 28568 |
| AEK07753.1 | JF704115_p2 | terminase small subunit | phrog_4479 | terminase small subunit | head and packaging | 1 | 437 | 691 |
| AEK07779.1 | JF704115_p28 | AlpA-like transcriptional regulator | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23901 | 24080 |
| AEK07810.1 | JF704115_p60 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 36844 | 38034 |
| AEK07820.1 | JF704115_p70 | HTH DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41002 | 41349 |
| AEK07825.1 | JF704115_p75 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 42488 | 42718 |
| AEK07764.1 | JF704115_p13 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 7212 | 7616 |