Genomic map of Mycobacterium virus Yoshi (JF704115)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JF704115
Definition
Mycobacterium phage Yoshi, complete sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus.
DB of origin
PVOG
Length
58714
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
116
%GC
61.02
Number of singletons
7
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEK07830.1 JF704115_p80 hypothetical protein phrog_34275 unknown function unknown function 1 44357 44515
AEK07827.1 JF704115_p77 hypothetical protein phrog_780 unknown function unknown function 1 42854 43129
AEK07791.1 JF704115_p40 hypothetical protein phrog_4511 unknown function unknown function 1 28571 28864
AEK07835.1 JF704115_p86 hypothetical protein phrog_1311 unknown function unknown function 1 46688 46834
AEK07867.1 JF704115_p96 hypothetical protein phrog_19489 unknown function unknown function 1 50613 50858
AEK07798.1 JF704115_p47 hypothetical protein singleton unknown function unknown function -1 30767 31003
AEK07804.1 JF704115_p53 hypothetical protein phrog_13315 unknown function unknown function -1 32307 32912
AEK07781.1 JF704115_p30 hypothetical protein phrog_932 unknown function unknown function 1 24520 24669
AEK07784.1 JF704115_p33 hypothetical protein phrog_2864 unknown function unknown function 1 24948 25109
AEK07774.1 JF704115_p23 hypothetical protein phrog_18521 minor tail protein tail 1 16394 17095
AEK07854.1 JF704115_p107 hypothetical protein phrog_1869 unknown function unknown function 1 54303 54470
AEK07816.2 JF704115_p66 hypothetical protein phrog_1849 unknown function unknown function 1 39702 39983
AEK07856.1 JF704115_p109 hypothetical protein singleton unknown function unknown function 1 54720 54851
AEK07778.1 JF704115_p27 hypothetical protein phrog_644 unknown function unknown function 1 23473 23904
AEK07775.1 JF704115_p24 structural protein phrog_346 minor tail protein tail 1 17092 19641
AEK07757.1 JF704115_p6 scaffolding protein phrog_3760 head scaffolding protein head and packaging 1 4306 4854
AEK07780.1 JF704115_p29 hypothetical protein phrog_411 unknown function unknown function 1 24217 24513
AEK07859.1 JF704115_p112 AlpA-like transcriptional regulator phrog_3813 unknown function unknown function 1 55370 55627
AEK07814.1 JF704115_p64 hypothetical protein phrog_780 unknown function unknown function 1 38747 38995
AEK07785.1 JF704115_p34 hypothetical protein singleton unknown function unknown function 1 25106 25258
AEK07836.1 JF704115_p87 HNH endonuclease domain protein phrog_14314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 46834 47673
AEK07862.1 JF704115_p115 galactosyl transferase phrog_1721 galactosyl transferase moron, auxiliary metabolic gene and host takeover 1 57309 58004
AEK07839.1 JF704115_p90 hypothetical protein phrog_6275 unknown function unknown function 1 48828 49208
AEK07838.1 JF704115_p89 hypothetical protein phrog_2080 unknown function unknown function 1 48568 48831
AEK07822.1 JF704115_p72 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 41696 41974
AEK07754.1 JF704115_p3 terminase large subunit phrog_2 terminase large subunit head and packaging 1 663 2183
AEK07794.1 JF704115_p43 hypothetical protein phrog_8497 unknown function unknown function -1 29673 29960
AEK07806.1 JF704115_p55 hypothetical protein phrog_16880 endonuclease DNA, RNA and nucleotide metabolism -1 34225 34653
AEK07831.1 JF704115_p82 hypothetical protein phrog_6573 unknown function unknown function 1 44871 44972
AEK07759.1 JF704115_p8 hypothetical protein phrog_14967 unknown function unknown function 1 5824 5967
AEK07787.1 JF704115_p36 hypothetical protein phrog_3888 unknown function unknown function 1 25524 25847
AEK07829.1 JF704115_p79 AAA ATPase phrog_1366 unknown function unknown function 1 43479 44360
AEK07818.1 JF704115_p68 hypothetical protein phrog_658 unknown function unknown function 1 40172 40510
AEK07845.1 JF704115_p98 hypothetical protein phrog_15080 unknown function unknown function 1 51196 51378
AEK07849.1 JF704115_p102 hypothetical protein phrog_4334 unknown function unknown function 1 52079 52576
AEK07758.1 JF704115_p7 capsid protein phrog_10 major head protein head and packaging 1 4877 5812
AEK07843.1 JF704115_p95 hypothetical protein phrog_24020 unknown function unknown function 1 50467 50616
AEK07848.1 JF704115_p101 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 51721 52092
AEK07782.1 JF704115_p31 hypothetical protein phrog_13008 unknown function unknown function 1 24666 24806
AEK07864.1 JF704115_p57 hypothetical protein phrog_3949 transcriptional repressor transcription regulation -1 35455 35913
AEK07850.1 JF704115_p103 hypothetical protein phrog_20643 unknown function unknown function 1 52689 52988
AEK07792.1 JF704115_p41 hypothetical protein phrog_6071 unknown function unknown function 1 28866 29099
AEK07866.1 JF704115_p92 hypothetical protein phrog_647 unknown function unknown function 1 49392 49736
AEK07837.1 JF704115_p88 hypothetical protein phrog_3171 replication initiation protein DNA, RNA and nucleotide metabolism 1 47666 48568
AEK07834.1 JF704115_p85 DNA methylase phrog_116 DNA methyltransferase other 1 45264 46691
AEK07760.1 JF704115_p9 hypothetical protein phrog_1290 head-tail adaptor connector 1 5985 6440
AEK07803.1 JF704115_p52 hypothetical protein phrog_6131 unknown function unknown function -1 32093 32293
AEK07786.1 JF704115_p35 hypothetical protein phrog_7196 unknown function unknown function 1 25258 25455
AEK07805.1 JF704115_p54 integrase phrog_1 integrase integration and excision -1 32954 34225
AEK07807.1 JF704115_p56 hypothetical protein phrog_24720 unknown function unknown function 1 35122 35538
AEK07860.1 JF704115_p113 hypothetical protein phrog_17545 unknown function unknown function -1 55624 56025
AEK07811.1 JF704115_p61 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 38120 38299
AEK07813.1 JF704115_p63 hypothetical protein phrog_1816 unknown function unknown function 1 38592 38750
AEK07844.1 JF704115_p97 hypothetical protein phrog_722 unknown function unknown function 1 50855 51199
AEK07826.1 JF704115_p76 hypothetical protein phrog_11976 unknown function unknown function 1 42715 42861
AEK07833.1 JF704115_p84 hypothetical protein phrog_2070 unknown function unknown function 1 45121 45270
AEK07861.1 JF704115_p114 glycosyl transferase phrog_8858 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 56128 57312
AEK07846.1 JF704115_p99 hypothetical protein phrog_1091 unknown function unknown function 1 51375 51554
AEK07800.1 JF704115_p49 hypothetical protein phrog_14625 unknown function unknown function -1 31259 31381
AEK07796.1 JF704115_p45 hypothetical protein phrog_647 unknown function unknown function -1 30160 30501
AEK07762.1 JF704115_p11 hypothetical protein phrog_16796 unknown function unknown function 1 6787 6963
AEK07823.1 JF704115_p73 HTH DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 41971 42333
AEK07783.1 JF704115_p32 hypothetical protein singleton unknown function unknown function 1 24806 24943
AEK07788.1 JF704115_p37 lysin A phrog_700 endolysin lysis 1 25847 27094
AEK07799.1 JF704115_p48 hypothetical protein phrog_12593 unknown function unknown function -1 31032 31262
AEK07763.1 JF704115_p12 hypothetical protein phrog_387 neck protein connector 1 6947 7219
AEK07793.1 JF704115_p42 hypothetical protein phrog_3798 unknown function unknown function 1 29099 29485
AEK07812.1 JF704115_p62 hypothetical protein phrog_9588 unknown function unknown function 1 38296 38565
AEK07766.1 JF704115_p16 tail assembly chaperone phrog_16781 tail assembly chaperone tail 1 8370 8981
AEK07851.1 JF704115_p104 hypothetical protein phrog_2247 unknown function unknown function 1 52981 53250
AEK07768.1 JF704115_p17 tapemeasure phrog_971 endolysin lysis 1 9264 12815
AEK07841.1 JF704115_p93 hypothetical protein phrog_27404 unknown function unknown function 1 49733 49918
AEK07770.1 JF704115_p19 structural protein phrog_110 minor tail protein tail 1 13743 15407
AEK07789.1 JF704115_p38 lysin B phrog_102 endolysin lysis 1 27091 28161
AEK07840.1 JF704115_p91 hypothetical protein phrog_1943 unknown function unknown function 1 49208 49408
AEK07795.1 JF704115_p44 hypothetical protein phrog_780 unknown function unknown function -1 29960 30151
AEK07776.1 JF704115_p25 structural protein phrog_382 minor tail protein with lysin activity tail 1 19638 22460
AEK07832.1 JF704115_p83 hypothetical protein phrog_2704 unknown function unknown function 1 44969 45124
AEK07801.1 JF704115_p50 hypothetical protein phrog_5497 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31363 31554
AEK07863.1 JF704115_p116 glycosyl transferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 58001 58603
AEK07773.1 JF704115_p22 hypothetical protein phrog_17345 minor tail protein tail 1 16089 16397
AEK07761.1 JF704115_p10 hypothetical protein phrog_763 head-tail adaptor connector 1 6437 6790
AEK07828.1 JF704115_p78 hypothetical protein phrog_2060 DNA methyltransferase other 1 43126 43482
AEK07755.1 JF704115_p4 portal protein phrog_104 portal protein head and packaging 1 2180 3604
AEK07797.1 JF704115_p46 hypothetical protein phrog_35396 unknown function unknown function -1 30570 30767
AEK07865.1 JF704115_p81 HNH endonuclease domain protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44512 44874
AEK07802.1 JF704115_p51 hypothetical protein phrog_17260 unknown function unknown function -1 31551 32033
AEK07857.1 JF704115_p110 hypothetical protein phrog_4307 unknown function unknown function 1 54848 55144
AEK07767.1 JF704115_p15 tail assembly chaperone phrog_21995 tail assembly chaperone tail 1 8370 9271
AEK07847.1 JF704115_p100 hypothetical protein singleton unknown function unknown function 1 51536 51667
AEK07819.1 JF704115_p69 WhiB phrog_1333 unknown function unknown function 1 40511 41005
AEK07808.1 JF704115_p58 hypothetical protein phrog_3642 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 36087 36389
AEK07769.1 JF704115_p18 structural protein phrog_106 minor tail protein tail 1 12812 13741
AEK07824.1 JF704115_p74 hypothetical protein phrog_2078 unknown function unknown function 1 42330 42488
AEK07809.1 JF704115_p59 hypothetical protein singleton unknown function unknown function 1 36386 36787
AEK07855.1 JF704115_p108 hypothetical protein phrog_6481 unknown function unknown function 1 54478 54699
AEK07777.1 JF704115_p26 structural protein phrog_553 minor tail protein tail 1 22460 23407
AEK07771.1 JF704115_p20 hypothetical protein phrog_8122 minor tail protein tail 1 15407 15772
AEK07821.1 JF704115_p71 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 41346 41699
AEK07853.1 JF704115_p106 hypothetical protein singleton unknown function unknown function 1 53903 54172
AEK07815.1 JF704115_p65 hypothetical protein phrog_1797 unknown function unknown function 1 38992 39624
AEK07817.1 JF704115_p67 hypothetical protein phrog_7605 unknown function unknown function 1 39980 40168
AEK07852.1 JF704115_p105 hypothetical protein phrog_1467 unknown function unknown function 1 53247 53906
AEK07756.1 JF704115_p5 protease phrog_193 head maturation protease head and packaging 1 3585 4229
AEK07858.1 JF704115_p111 hypothetical protein phrog_26794 unknown function unknown function 1 55144 55362
AEK07765.1 JF704115_p14 major tail subunit phrog_117 major tail protein tail 1 7678 8271
AEK07772.1 JF704115_p21 hypothetical protein phrog_17043 minor tail protein tail 1 15769 16092
AEK07752.1 JF704115_p1 HNH endonuclease domain protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38 370
AEK07842.1 JF704115_p94 hypothetical protein phrog_1573 DNA methyltransferase other 1 49980 50474
AEK07790.1 JF704115_p39 hypothetical protein phrog_443 holin lysis 1 28311 28568
AEK07753.1 JF704115_p2 terminase small subunit phrog_4479 terminase small subunit head and packaging 1 437 691
AEK07779.1 JF704115_p28 AlpA-like transcriptional regulator phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 23901 24080
AEK07810.1 JF704115_p60 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 36844 38034
AEK07820.1 JF704115_p70 HTH DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 41002 41349
AEK07825.1 JF704115_p75 hypothetical protein phrog_1834 unknown function unknown function 1 42488 42718
AEK07764.1 JF704115_p13 hypothetical protein phrog_123 tail terminator connector 1 7212 7616