| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF704117 |
Definition |
Mycobacterium virus RockyHorror, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
PVOG |
Length |
56719 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
107 |
%GC |
61.12 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEK06715.1 | JF704117_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5007 | 5915 |
| AEK06791.1 | JF704117_p88 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 49914 | 50081 |
| AEK06770.1 | JF704117_p62 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40254 | 40409 |
| AEK06716.1 | JF704117_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5927 | 6298 |
| AEK06808.1 | JF704117_p105 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 55578 | 55814 |
| AEK06802.1 | JF704117_p99 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52803 | 52967 |
| AEK06786.1 | JF704117_p83 | hypothetical protein | phrog_15751 | unknown function | unknown function | 1 | 48309 | 48554 |
| AEK06784.1 | JF704117_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47026 | 47121 |
| AEK06793.1 | JF704117_p90 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 50340 | 50534 |
| AEK06746.1 | JF704117_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30425 | 30520 |
| AEK06782.1 | JF704117_p75 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 46367 | 46729 |
| AEK06760.1 | JF704117_p52 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36869 | 37060 |
| AEK06768.1 | JF704117_p60 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39611 | 39892 |
| AEK06801.1 | JF704117_p98 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 52582 | 52806 |
| AEK06741.1 | JF704117_p33 | holin | phrog_443 | holin | lysis | 1 | 28458 | 28691 |
| AEK06804.1 | JF704117_p101 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 53128 | 53319 |
| AEK06785.1 | JF704117_p81 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 47659 | 47991 |
| AEK06780.1 | JF704117_p73 | hypothetical protein | phrog_5500 | unknown function | unknown function | 1 | 45250 | 45468 |
| AEK06748.1 | JF704117_p40 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 30692 | 30844 |
| AEK06739.1 | JF704117_p31 | lysin A | phrog_700 | endolysin | lysis | 1 | 26248 | 27441 |
| AEK06779.1 | JF704117_p72 | hypothetical protein | phrog_6193 | unknown function | unknown function | 1 | 45131 | 45253 |
| AEK06800.1 | JF704117_p97 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51834 | 52472 |
| AEK06773.1 | JF704117_p65 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40989 | 41567 |
| AEK06775.1 | JF704117_p68 | hypothetical protein | phrog_7443 | unknown function | unknown function | 1 | 44439 | 44660 |
| AEK06783.1 | JF704117_p76 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46722 | 46946 |
| AEK06733.1 | JF704117_p25 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24122 | 24946 |
| AEK06749.1 | JF704117_p41 | hypothetical protein | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30847 | 31044 |
| AEK06759.1 | JF704117_p51 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 36489 | 36872 |
| AEK06730.1 | JF704117_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22855 | 23196 |
| AEK06722.1 | JF704117_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8389 | 9325 |
| AEK06756.1 | JF704117_p48 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 34943 | 35947 |
| AEK06727.1 | JF704117_p19 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 17258 | 19795 |
| AEK06725.1 | JF704117_p17 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 14667 | 16376 |
| AEK06789.1 | JF704117_p86 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 49088 | 49420 |
| AEK06795.1 | JF704117_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50794 | 51075 |
| AEK06803.1 | JF704117_p100 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52973 | 53131 |
| AEK06757.1 | JF704117_p49 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35944 | 36162 |
| AEK06734.1 | JF704117_p26 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24951 | 25148 |
| AEK06723.1 | JF704117_p15 | tapemeasure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9343 | 12870 |
| AEK06736.1 | JF704117_p28 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25587 | 25733 |
| AEK06755.1 | JF704117_p47 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34653 | 34886 |
| AEK06747.1 | JF704117_p39 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 30558 | 30692 |
| AEK06774.1 | JF704117_p67 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 41923 | 44442 |
| AEK06717.1 | JF704117_p9 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6295 | 6624 |
| AEK06765.1 | JF704117_p57 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38303 | 38638 |
| AEK06805.1 | JF704117_p102 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 53316 | 53717 |
| AEK06720.1 | JF704117_p12 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7461 | 8270 |
| AEK06799.1 | JF704117_p96 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 51586 | 51837 |
| AEK06790.1 | JF704117_p87 | hypothetical protein | phrog_14412 | unknown function | unknown function | 1 | 49417 | 49917 |
| AEK06753.1 | JF704117_p45 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33204 | 33650 |
| AEK06807.1 | JF704117_p104 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53953 | 55575 |
| AEK06814.1 | JF704117_p80 | hypothetical protein | phrog_5892 | unknown function | unknown function | 1 | 47416 | 47574 |
| AEK06810.1 | JF704117_p107 | hypothetical protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56013 | 56627 |
| AEK06710.1 | JF704117_p2 | hypothetical protein | phrog_4479 | terminase small subunit | head and packaging | 1 | 445 | 699 |
| AEK06763.1 | JF704117_p55 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 37836 | 38114 |
| AEK06729.1 | JF704117_p21 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21678 | 22841 |
| AEK06735.1 | JF704117_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25296 | 25580 |
| AEK06752.1 | JF704117_p44 | integrase | phrog_1 | integrase | integration and excision | 1 | 31835 | 33124 |
| AEK06731.1 | JF704117_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23219 | 23473 |
| AEK06794.1 | JF704117_p91 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 50534 | 50797 |
| AEK06813.1 | JF704117_p79 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47096 | 47419 |
| AEK06815.1 | JF704117_p82 | hypothetical protein | phrog_24183 | unknown function | unknown function | 1 | 47978 | 48385 |
| AEK06761.1 | JF704117_p53 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 37057 | 37299 |
| AEK06778.1 | JF704117_p71 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44952 | 45131 |
| AEK06738.1 | JF704117_p30 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26018 | 26251 |
| AEK06806.1 | JF704117_p103 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53714 | 53956 |
| AEK06721.1 | JF704117_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8389 | 8940 |
| AEK06771.1 | JF704117_p63 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40409 | 40639 |
| AEK06809.1 | JF704117_p106 | hypothetical protein | phrog_8053 | unknown function | unknown function | 1 | 55807 | 56016 |
| AEK06740.1 | JF704117_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27441 | 28442 |
| AEK06712.1 | JF704117_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2199 | 3620 |
| AEK06777.1 | JF704117_p70 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 44803 | 44955 |
| AEK06766.1 | JF704117_p58 | hypothetical protein | phrog_1333 | unknown function | unknown function | 1 | 38638 | 39132 |
| AEK06742.1 | JF704117_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28688 | 29062 |
| AEK06724.1 | JF704117_p16 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 12871 | 14580 |
| AEK06798.1 | JF704117_p95 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 51354 | 51593 |
| AEK06767.1 | JF704117_p59 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39129 | 39614 |
| AEK06709.1 | JF704117_p1 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41 | 373 |
| AEK06745.1 | JF704117_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30124 | 30435 |
| AEK06796.1 | JF704117_p93 | hypothetical protein | phrog_12331 | unknown function | unknown function | 1 | 51113 | 51241 |
| AEK06718.1 | JF704117_p10 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6631 | 6957 |
| AEK06797.1 | JF704117_p94 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 51238 | 51357 |
| AEK06744.1 | JF704117_p36 | exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29306 | 30127 |
| AEK06769.1 | JF704117_p61 | WhiB | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39889 | 40254 |
| AEK06811.1 | JF704117_p66 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41564 | 41926 |
| AEK06788.1 | JF704117_p85 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 48948 | 49091 |
| AEK06751.1 | JF704117_p43 | hypothetical protein | phrog_22055 | unknown function | unknown function | -1 | 31284 | 31460 |
| AEK06776.1 | JF704117_p69 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 44660 | 44806 |
| AEK06792.1 | JF704117_p89 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 50134 | 50343 |
| AEK06762.1 | JF704117_p54 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 37296 | 37757 |
| AEK06719.1 | JF704117_p11 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 6947 | 7351 |
| AEK06711.1 | JF704117_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 671 | 2158 |
| AEK06726.1 | JF704117_p18 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 16431 | 17261 |
| AEK06737.1 | JF704117_p29 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25730 | 25897 |
| AEK06772.1 | JF704117_p64 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 40636 | 40992 |
| AEK06787.1 | JF704117_p84 | hypothetical protein | phrog_19489 | unknown function | unknown function | 1 | 48710 | 48928 |
| AEK06764.1 | JF704117_p56 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 38111 | 38299 |
| AEK06758.1 | JF704117_p50 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36248 | 36445 |
| AEK06743.1 | JF704117_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29059 | 29319 |
| AEK06713.1 | JF704117_p5 | protease | phrog_193 | head maturation protease | head and packaging | 1 | 3604 | 4329 |
| AEK06728.1 | JF704117_p20 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19792 | 21681 |
| AEK06714.1 | JF704117_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4408 | 4944 |
| AEK06754.1 | JF704117_p46 | hypothetical protein | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 33914 | 34639 |
| AEK06812.1 | JF704117_p77 | hypothetical protein | phrog_9299 | unknown function | unknown function | 1 | 46943 | 47029 |
| AEK06781.1 | JF704117_p74 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45465 | 46370 |
| AEK06732.1 | JF704117_p24 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23487 | 24125 |
| AEK06750.1 | JF704117_p42 | hypothetical protein | phrog_5254 | unknown function | unknown function | -1 | 31045 | 31287 |