| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF937100 |
Definition |
Mycobacterium virus Lesedi, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
PVOG |
Length |
50486 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
89 |
%GC |
63.76 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEK09307.1 | JF937100_p11 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8443 | 9885 |
| AEK09299.1 | JF937100_p3 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1548 | 1754 |
| AEK09324.1 | JF937100_p28 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23166 | 23498 |
| AEK09384.1 | JF937100_p88 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 49889 | 50089 |
| AEK09333.1 | JF937100_p37 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 30938 | 31210 |
| AEK09385.1 | JF937100_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50152 | 50325 |
| AEK09367.1 | JF937100_p71 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 43892 | 44287 |
| AEK09357.1 | JF937100_p61 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 40417 | 40563 |
| AEK09326.1 | JF937100_p30 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 23867 | 25720 |
| AEK09365.1 | JF937100_p69 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 43450 | 43584 |
| AEK09325.1 | JF937100_p29 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23495 | 23842 |
| AEK09342.1 | JF937100_p46 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 34936 | 35721 |
| AEK09302.1 | JF937100_p6 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3822 | 4082 |
| AEK09334.1 | JF937100_p38 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31207 | 31377 |
| AEK09358.1 | JF937100_p62 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 40560 | 40853 |
| AEK09322.1 | JF937100_p26 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20868 | 22670 |
| AEK09301.1 | JF937100_p5 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3098 | 3808 |
| AEK09354.1 | JF937100_p58 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 39249 | 39515 |
| AEK09355.1 | JF937100_p59 | hypothetical protein | phrog_5742 | unknown function | unknown function | -1 | 39522 | 39620 |
| AEK09304.1 | JF937100_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4347 | 5780 |
| AEK09328.1 | JF937100_p32 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27281 | 27604 |
| AEK09372.1 | JF937100_p76 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 45837 | 46040 |
| AEK09377.1 | JF937100_p81 | hypothetical protein | phrog_17848 | unknown function | unknown function | -1 | 46829 | 46999 |
| AEK09309.1 | JF937100_p13 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10821 | 11333 |
| AEK09316.1 | JF937100_p20 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14331 | 15182 |
| AEK09323.1 | JF937100_p27 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22708 | 23154 |
| AEK09319.1 | JF937100_p23 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16115 | 18586 |
| AEK09369.1 | JF937100_p73 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45103 | 45402 |
| AEK09378.1 | JF937100_p82 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 47309 | 48034 |
| AEK09332.2 | JF937100_p36 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 29315 | 30817 |
| AEK09305.1 | JF937100_p9 | lysin B | phrog_102 | endolysin | lysis | 1 | 5770 | 6738 |
| AEK09329.1 | JF937100_p33 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27614 | 27805 |
| AEK09344.1 | JF937100_p48 | RDF protein | phrog_221 | metallo-phosphoesterase | other | -1 | 35859 | 36626 |
| AEK09353.1 | JF937100_p57 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 38887 | 39252 |
| AEK09336.1 | JF937100_p40 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31466 | 31735 |
| AEK09349.1 | JF937100_p53 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 38055 | 38213 |
| AEK09359.1 | JF937100_p63 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 40850 | 41041 |
| AEK09368.2 | JF937100_p72 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44329 | 44841 |
| AEK09350.1 | JF937100_p54 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38210 | 38344 |
| AEK09363.1 | JF937100_p67 | hypothetical protein | phrog_23949 | unknown function | unknown function | -1 | 42830 | 43222 |
| AEK09381.1 | JF937100_p85 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49141 | 49329 |
| AEK09339.1 | JF937100_p43 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 33978 | 34208 |
| AEK09371.1 | JF937100_p75 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 45571 | 45840 |
| AEK09364.1 | JF937100_p68 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 43206 | 43457 |
| AEK09314.1 | JF937100_p18 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13483 | 13872 |
| AEK09375.1 | JF937100_p79 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 46389 | 46517 |
| AEK09370.1 | JF937100_p74 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 45395 | 45574 |
| AEK09360.1 | JF937100_p64 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 41198 | 41932 |
| AEK09383.1 | JF937100_p87 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 49694 | 49771 |
| AEK09313.1 | JF937100_p17 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13115 | 13477 |
| AEK09382.1 | JF937100_p86 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 49326 | 49691 |
| AEK09303.1 | JF937100_p7 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4090 | 4347 |
| AEK09366.1 | JF937100_p70 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 43581 | 43895 |
| AEK09347.1 | JF937100_p51 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37194 | 37772 |
| AEK09320.1 | JF937100_p24 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18610 | 20667 |
| AEK09376.1 | JF937100_p80 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 46683 | 46832 |
| AEK09341.1 | JF937100_p45 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34757 | 34939 |
| AEK09345.1 | JF937100_p49 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 36623 | 36802 |
| AEK09352.1 | JF937100_p56 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 38804 | 38890 |
| AEK09351.1 | JF937100_p55 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38341 | 38817 |
| AEK09311.1 | JF937100_p15 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12430 | 12666 |
| AEK09346.1 | JF937100_p50 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 36799 | 37197 |
| AEK09338.1 | JF937100_p42 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32115 | 33941 |
| AEK09343.1 | JF937100_p47 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35714 | 35854 |
| AEK09318.1 | JF937100_p21 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15304 | 16103 |
| AEK09330.1 | JF937100_p34 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 27802 | 28758 |
| AEK09362.1 | JF937100_p66 | hypothetical protein | phrog_27003 | unknown function | unknown function | -1 | 42603 | 42833 |
| AEK09374.1 | JF937100_p78 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46225 | 46392 |
| AEK09356.1 | JF937100_p60 | DnaB | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 39621 | 40430 |
| AEK09335.1 | JF937100_p39 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31374 | 31520 |
| AEK09321.1 | JF937100_p25 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20686 | 20868 |
| AEK09306.1 | JF937100_p10 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6758 | 8446 |
| AEK09317.1 | JF937100_p22 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15304 | 15681 |
| AEK09300.1 | JF937100_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2018 | 3088 |
| AEK09379.1 | JF937100_p83 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 48122 | 48406 |
| AEK09373.1 | JF937100_p77 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 46037 | 46225 |
| AEK09337.1 | JF937100_p41 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 31732 | 32094 |
| AEK09310.1 | JF937100_p14 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11344 | 12351 |
| AEK09331.1 | JF937100_p35 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28879 | 29163 |
| AEK09308.1 | JF937100_p12 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9882 | 10763 |
| AEK09380.1 | JF937100_p84 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 48706 | 48861 |
| AEK09312.1 | JF937100_p16 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12666 | 13115 |
| AEK09348.1 | JF937100_p52 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37561 | 38076 |
| AEK09361.1 | JF937100_p65 | RecB | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 41952 | 42530 |
| AEK09340.1 | JF937100_p44 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34239 | 34760 |
| AEK09327.1 | JF937100_p31 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25713 | 27191 |
| AEK09298.1 | JF937100_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 930 | 1370 |
| AEK09315.1 | JF937100_p19 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13876 | 14322 |
| AEK09297.1 | JF937100_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 599 | 895 |