Genomic map of Mycobacterium virus Lesedi (JF937100)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JF937100
Definition
Mycobacterium virus Lesedi, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
PVOG
Length
50486
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
89
%GC
63.76
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEK09307.1 JF937100_p11 portal protein phrog_104 portal protein head and packaging 1 8443 9885
AEK09299.1 JF937100_p3 hypothetical protein phrog_2830 unknown function unknown function 1 1548 1754
AEK09324.1 JF937100_p28 hypothetical protein phrog_981 minor tail protein tail 1 23166 23498
AEK09384.1 JF937100_p88 hypothetical protein phrog_828 unknown function unknown function -1 49889 50089
AEK09333.1 JF937100_p37 hypothetical protein phrog_1966 unknown function unknown function -1 30938 31210
AEK09385.1 JF937100_p89 hypothetical protein singleton unknown function unknown function -1 50152 50325
AEK09367.1 JF937100_p71 hypothetical protein phrog_1809 unknown function unknown function -1 43892 44287
AEK09357.1 JF937100_p61 hypothetical protein phrog_1705 unknown function unknown function -1 40417 40563
AEK09326.1 JF937100_p30 minor tail protein phrog_346 minor tail protein tail 1 23867 25720
AEK09365.1 JF937100_p69 hypothetical protein phrog_5947 unknown function unknown function -1 43450 43584
AEK09325.1 JF937100_p29 hypothetical protein phrog_1397 unknown function unknown function 1 23495 23842
AEK09342.1 JF937100_p46 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 34936 35721
AEK09302.1 JF937100_p6 hypothetical protein phrog_1718 tail protein tail 1 3822 4082
AEK09334.1 JF937100_p38 hypothetical protein phrog_2035 unknown function unknown function -1 31207 31377
AEK09358.1 JF937100_p62 hypothetical protein phrog_520 unknown function unknown function -1 40560 40853
AEK09322.1 JF937100_p26 minor tail protein phrog_110 minor tail protein tail 1 20868 22670
AEK09301.1 JF937100_p5 hypothetical protein phrog_553 minor tail protein tail 1 3098 3808
AEK09354.1 JF937100_p58 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 39249 39515
AEK09355.1 JF937100_p59 hypothetical protein phrog_5742 unknown function unknown function -1 39522 39620
AEK09304.1 JF937100_p8 lysin A phrog_317 endolysin lysis 1 4347 5780
AEK09328.1 JF937100_p32 hypothetical protein phrog_644 unknown function unknown function 1 27281 27604
AEK09372.1 JF937100_p76 hypothetical protein phrog_1387 unknown function unknown function -1 45837 46040
AEK09377.1 JF937100_p81 hypothetical protein phrog_17848 unknown function unknown function -1 46829 46999
AEK09309.1 JF937100_p13 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 10821 11333
AEK09316.1 JF937100_p20 major tail protein phrog_117 major tail protein tail 1 14331 15182
AEK09323.1 JF937100_p27 hypothetical protein phrog_352 minor tail protein tail 1 22708 23154
AEK09319.1 JF937100_p23 tapemeasure protein phrog_305 tail length tape measure protein tail 1 16115 18586
AEK09369.1 JF937100_p73 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 45103 45402
AEK09378.1 JF937100_p82 DNA methylase phrog_363 DNA methyltransferase other -1 47309 48034
AEK09332.2 JF937100_p36 serine integrase phrog_95 integrase integration and excision 1 29315 30817
AEK09305.1 JF937100_p9 lysin B phrog_102 endolysin lysis 1 5770 6738
AEK09329.1 JF937100_p33 hypothetical protein phrog_1560 unknown function unknown function 1 27614 27805
AEK09344.1 JF937100_p48 RDF protein phrog_221 metallo-phosphoesterase other -1 35859 36626
AEK09353.1 JF937100_p57 hypothetical protein phrog_722 unknown function unknown function -1 38887 39252
AEK09336.1 JF937100_p40 hypothetical protein phrog_1971 unknown function unknown function -1 31466 31735
AEK09349.1 JF937100_p53 hypothetical protein phrog_1783 unknown function unknown function -1 38055 38213
AEK09359.1 JF937100_p63 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 40850 41041
AEK09368.2 JF937100_p72 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44329 44841
AEK09350.1 JF937100_p54 hypothetical protein phrog_397 unknown function unknown function -1 38210 38344
AEK09363.1 JF937100_p67 hypothetical protein phrog_23949 unknown function unknown function -1 42830 43222
AEK09381.1 JF937100_p85 hypothetical protein phrog_1387 unknown function unknown function -1 49141 49329
AEK09339.1 JF937100_p43 hypothetical protein phrog_1781 unknown function unknown function -1 33978 34208
AEK09371.1 JF937100_p75 hypothetical protein phrog_1720 unknown function unknown function -1 45571 45840
AEK09364.1 JF937100_p68 hypothetical protein phrog_6068 unknown function unknown function -1 43206 43457
AEK09314.1 JF937100_p18 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13483 13872
AEK09375.1 JF937100_p79 hypothetical protein phrog_2093 unknown function unknown function -1 46389 46517
AEK09370.1 JF937100_p74 hypothetical protein phrog_6474 recombination directionality factor integration and excision -1 45395 45574
AEK09360.1 JF937100_p64 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 41198 41932
AEK09383.1 JF937100_p87 hypothetical protein phrog_2212 unknown function unknown function -1 49694 49771
AEK09313.1 JF937100_p17 hypothetical protein phrog_320 head closure Hc1 connector 1 13115 13477
AEK09382.1 JF937100_p86 hypothetical protein phrog_5542 unknown function unknown function -1 49326 49691
AEK09303.1 JF937100_p7 hypothetical protein phrog_747 unknown function unknown function 1 4090 4347
AEK09366.1 JF937100_p70 hypothetical protein phrog_1584 unknown function unknown function -1 43581 43895
AEK09347.1 JF937100_p51 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37194 37772
AEK09320.1 JF937100_p24 minor tail protein phrog_106 minor tail protein tail 1 18610 20667
AEK09376.1 JF937100_p80 hypothetical protein phrog_932 unknown function unknown function -1 46683 46832
AEK09341.1 JF937100_p45 hypothetical protein phrog_499 unknown function unknown function -1 34757 34939
AEK09345.1 JF937100_p49 hypothetical protein phrog_1503 unknown function unknown function -1 36623 36802
AEK09352.1 JF937100_p56 hypothetical protein phrog_1019 unknown function unknown function -1 38804 38890
AEK09351.1 JF937100_p55 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 38341 38817
AEK09311.1 JF937100_p15 hypothetical protein phrog_1857 head-tail connector protein connector 1 12430 12666
AEK09346.1 JF937100_p50 hypothetical protein phrog_474 phosphofructokinase other -1 36799 37197
AEK09338.1 JF937100_p42 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32115 33941
AEK09343.1 JF937100_p47 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 35714 35854
AEK09318.1 JF937100_p21 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15304 16103
AEK09330.1 JF937100_p34 hypothetical protein phrog_754 minor tail protein tail 1 27802 28758
AEK09362.1 JF937100_p66 hypothetical protein phrog_27003 unknown function unknown function -1 42603 42833
AEK09374.1 JF937100_p78 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 46225 46392
AEK09356.1 JF937100_p60 DnaB phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 39621 40430
AEK09335.1 JF937100_p39 hypothetical protein phrog_1860 unknown function unknown function -1 31374 31520
AEK09321.1 JF937100_p25 hypothetical protein phrog_1543 minor tail protein tail 1 20686 20868
AEK09306.1 JF937100_p10 terminase phrog_9 terminase large subunit head and packaging 1 6758 8446
AEK09317.1 JF937100_p22 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15304 15681
AEK09300.1 JF937100_p4 hypothetical protein phrog_1197 tail protein tail 1 2018 3088
AEK09379.1 JF937100_p83 hypothetical protein phrog_3414 unknown function unknown function -1 48122 48406
AEK09373.1 JF937100_p77 hypothetical protein phrog_1155 unknown function unknown function -1 46037 46225
AEK09337.1 JF937100_p41 hypothetical protein phrog_383 unknown function unknown function -1 31732 32094
AEK09310.1 JF937100_p14 major capsid protein phrog_10 major head protein head and packaging 1 11344 12351
AEK09331.1 JF937100_p35 hypothetical protein phrog_411 unknown function unknown function 1 28879 29163
AEK09308.1 JF937100_p12 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9882 10763
AEK09380.1 JF937100_p84 hypothetical protein phrog_2985 unknown function unknown function -1 48706 48861
AEK09312.1 JF937100_p16 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12666 13115
AEK09348.1 JF937100_p52 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 37561 38076
AEK09361.1 JF937100_p65 RecB phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 41952 42530
AEK09340.1 JF937100_p44 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34239 34760
AEK09327.1 JF937100_p31 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 25713 27191
AEK09298.1 JF937100_p2 hypothetical protein phrog_226 minor tail protein tail 1 930 1370
AEK09315.1 JF937100_p19 hypothetical protein phrog_123 tail terminator connector 1 13876 14322
AEK09297.1 JF937100_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 599 895