| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF937107 |
Definition |
Mycobacterium phage SirHarley, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dclasvirinae; Plotvirus; Mycobacterium virus Plot. |
DB of origin |
PVOG |
Length |
64791 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
59.56 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEK10252.1 | JF937107_p43 | hypothetical protein | phrog_10424 | unknown function | unknown function | -1 | 35741 | 36226 |
| AEK10280.1 | JF937107_p71 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 54055 | 55155 |
| AEK10264.1 | JF937107_p55 | hypothetical protein | phrog_10722 | unknown function | unknown function | 1 | 41845 | 42126 |
| AEK10269.1 | JF937107_p60 | hypothetical protein | phrog_8491 | unknown function | unknown function | 1 | 44730 | 44918 |
| AEK10277.1 | JF937107_p68 | hypothetical protein | phrog_3142 | FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase | moron, auxiliary metabolic gene and host takeover | 1 | 49381 | 50091 |
| AEK10262.1 | JF937107_p53 | hypothetical protein | phrog_10201 | unknown function | unknown function | 1 | 39657 | 39908 |
| AEK10243.1 | JF937107_p33 | hypothetical protein | phrog_3758 | virion structural protein | head and packaging | 1 | 29765 | 30193 |
| AEK10292.1 | JF937107_p83 | hypothetical protein | phrog_8685 | unknown function | unknown function | 1 | 59281 | 59526 |
| AEK10251.1 | JF937107_p41 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 34543 | 35427 |
| AEK10297.1 | JF937107_p89 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 61242 | 61364 |
| AEK10242.1 | JF937107_p32 | hypothetical protein | phrog_6443 | unknown function | unknown function | 1 | 29454 | 29762 |
| AEK10211.1 | JF937107_p1 | hypothetical protein | phrog_5460 | unknown function | unknown function | 1 | 1 | 309 |
| AEK10260.1 | JF937107_p51 | hypothetical protein | phrog_5307 | unknown function | unknown function | 1 | 38692 | 39282 |
| AEK10285.1 | JF937107_p76 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 56738 | 56971 |
| AEK10215.1 | JF937107_p5 | hypothetical protein | phrog_12064 | unknown function | unknown function | 1 | 1937 | 2116 |
| AEK10274.1 | JF937107_p65 | deoxyribnucleotidase | phrog_415 | polynucleotide kinase | other | 1 | 47753 | 48370 |
| AEK10272.1 | JF937107_p63 | hypothetical protein | phrog_27898 | unknown function | unknown function | 1 | 46833 | 46949 |
| AEK10300.1 | JF937107_p85 | HNH endonuclease | phrog_11872 | unknown function | unknown function | 1 | 59827 | 60120 |
| AEK10257.1 | JF937107_p48 | hypothetical protein | phrog_421 | unknown function | unknown function | 1 | 37246 | 38355 |
| AEK10279.1 | JF937107_p70 | hypothetical protein | phrog_10638 | unknown function | unknown function | 1 | 53506 | 54027 |
| AEK10255.1 | JF937107_p46 | hypothetical protein | phrog_7969 | unknown function | unknown function | 1 | 36787 | 37032 |
| AEK10294.1 | JF937107_p86 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 60117 | 60344 |
| AEK10222.1 | JF937107_p12 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 8720 | 9625 |
| AEK10289.1 | JF937107_p80 | hypothetical protein | phrog_10814 | unknown function | unknown function | 1 | 58300 | 58848 |
| AEK10228.1 | JF937107_p18 | hypothetical protein | phrog_4904 | unknown function | unknown function | 1 | 12751 | 13128 |
| AEK10295.1 | JF937107_p87 | hypothetical protein | phrog_11488 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60341 | 60886 |
| AEK10230.1 | JF937107_p20 | hypothetical protein | phrog_4995 | unknown function | unknown function | 1 | 13480 | 13899 |
| AEK10298.1 | JF937107_p90 | primase/polymerase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 61432 | 64365 |
| AEK10254.1 | JF937107_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36689 | 36790 |
| AEK10226.1 | JF937107_p16 | hypothetical protein | phrog_5318 | unknown function | unknown function | 1 | 12021 | 12389 |
| AEK10241.1 | JF937107_p31 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 28566 | 29432 |
| AEK10236.1 | JF937107_p26 | tapemeasure protein | phrog_6435 | tail length tape measure protein | tail | 1 | 16314 | 21086 |
| AEK10271.1 | JF937107_p62 | CDC45-like protein | phrog_10064 | unknown function | unknown function | 1 | 45793 | 46731 |
| AEK10235.1 | JF937107_p25 | tail assembly chaperone | phrog_6778 | tail assembly chaperone | tail | 1 | 16040 | 16312 |
| AEK10263.1 | JF937107_p54 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 39905 | 41848 |
| AEK10238.1 | JF937107_p28 | hypothetical protein | phrog_1885 | minor tail protein | tail | 1 | 22593 | 24248 |
| AEK10291.1 | JF937107_p82 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 58970 | 59284 |
| AEK10247.1 | JF937107_p37 | hypothetical protein | phrog_8515 | unknown function | unknown function | 1 | 31581 | 32246 |
| AEK10217.1 | JF937107_p7 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 4532 | 6298 |
| AEK10239.1 | JF937107_p29 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24248 | 26518 |
| AEK10212.1 | JF937107_p2 | hypothetical protein | phrog_7407 | unknown function | unknown function | 1 | 421 | 1515 |
| AEK10258.1 | JF937107_p49 | hypothetical protein | phrog_13277 | unknown function | unknown function | 1 | 38355 | 38459 |
| AEK10275.1 | JF937107_p66 | methyltransferase | phrog_6636 | methyltransferase | other | 1 | 48370 | 48900 |
| AEK10231.1 | JF937107_p21 | hypothetical protein | phrog_10150 | unknown function | unknown function | 1 | 13936 | 14292 |
| AEK10224.1 | JF937107_p14 | hypothetical protein | phrog_5042 | unknown function | unknown function | 1 | 10381 | 10803 |
| AEK10282.1 | JF937107_p73 | hypothetical protein | phrog_2507 | unknown function | unknown function | 1 | 55946 | 56182 |
| AEK10216.1 | JF937107_p6 | VIP2-like toxin domain protein | phrog_11599 | unknown function | unknown function | 1 | 2127 | 4535 |
| AEK10290.1 | JF937107_p81 | hypothetical protein | phrog_13969 | unknown function | unknown function | 1 | 58848 | 58973 |
| AEK10299.1 | JF937107_p42 | hypothetical protein | phrog_11944 | unknown function | unknown function | -1 | 35511 | 35741 |
| AEK10244.1 | JF937107_p34 | lysin A | phrog_1512 | endolysin | lysis | 1 | 30202 | 31185 |
| AEK10246.1 | JF937107_p36 | hypothetical protein | phrog_21841 | unknown function | unknown function | 1 | 31450 | 31707 |
| AEK10265.1 | JF937107_p56 | hypothetical protein | phrog_10024 | unknown function | unknown function | 1 | 42229 | 42717 |
| AEK10223.1 | JF937107_p13 | hypothetical protein | phrog_4866 | head scaffolding protein | head and packaging | 1 | 9658 | 10365 |
| AEK10286.1 | JF937107_p77 | hypothetical protein | phrog_10394 | unknown function | unknown function | 1 | 57030 | 57245 |
| AEK10237.1 | JF937107_p27 | hypothetical protein | phrog_7161 | minor tail protein | tail | 1 | 21076 | 22596 |
| AEK10250.1 | JF937107_p40 | hypothetical protein | phrog_11465 | unknown function | unknown function | 1 | 33956 | 34537 |
| AEK10283.1 | JF937107_p74 | hypothetical protein | phrog_10832 | unknown function | unknown function | 1 | 56179 | 56463 |
| AEK10266.1 | JF937107_p57 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 42899 | 43279 |
| AEK10218.1 | JF937107_p8 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 6320 | 7903 |
| AEK10293.1 | JF937107_p84 | hypothetical protein | phrog_10449 | unknown function | unknown function | 1 | 59523 | 59837 |
| AEK10225.1 | JF937107_p15 | major capsid protein | phrog_3990 | major head protein | head and packaging | 1 | 10840 | 12024 |
| AEK10249.1 | JF937107_p39 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 32687 | 33946 |
| AEK10213.1 | JF937107_p3 | hypothetical protein | phrog_10843 | unknown function | unknown function | 1 | 1559 | 1753 |
| AEK10227.1 | JF937107_p17 | hypothetical protein | phrog_5274 | unknown function | unknown function | 1 | 12392 | 12724 |
| AEK10232.1 | JF937107_p22 | hypothetical protein | phrog_5278 | unknown function | unknown function | 1 | 14304 | 14504 |
| AEK10278.1 | JF937107_p69 | DNA polymerase III alpha subunit | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 50202 | 53504 |
| AEK10234.1 | JF937107_p24 | tail assembly chaperone | phrog_4336 | tail assembly chaperone | tail | 1 | 15418 | 16071 |
| AEK10281.1 | JF937107_p72 | hypothetical protein | phrog_1981 | unknown function | unknown function | 1 | 55309 | 55980 |
| AEK10219.1 | JF937107_p9 | hypothetical protein | phrog_1375 | unknown function | unknown function | 1 | 7914 | 8126 |
| AEK10261.1 | JF937107_p52 | hypothetical protein | phrog_11197 | unknown function | unknown function | 1 | 39360 | 39599 |
| AEK10267.1 | JF937107_p58 | hypothetical protein | phrog_24640 | unknown function | unknown function | 1 | 43318 | 43560 |
| AEK10248.1 | JF937107_p38 | lysin B | phrog_726 | unknown function | unknown function | 1 | 32230 | 32685 |
| AEK10268.1 | JF937107_p59 | hypothetical protein | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43598 | 44728 |
| AEK10253.1 | JF937107_p44 | hypothetical protein | phrog_9402 | unknown function | unknown function | 1 | 36411 | 36692 |
| AEK10220.1 | JF937107_p10 | hypothetical protein | phrog_5556 | tail protein | tail | 1 | 8123 | 8584 |
| AEK10288.1 | JF937107_p79 | hypothetical protein | phrog_10149 | unknown function | unknown function | 1 | 57701 | 58276 |
| AEK10229.1 | JF937107_p19 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 13121 | 13483 |
| AEK10296.1 | JF937107_p88 | hypothetical protein | phrog_10882 | unknown function | unknown function | 1 | 60934 | 61245 |
| AEK10284.1 | JF937107_p75 | hypothetical protein | phrog_10494 | unknown function | unknown function | 1 | 56475 | 56735 |
| AEK10245.1 | JF937107_p35 | hypothetical protein | phrog_9801 | unknown function | unknown function | 1 | 31182 | 31436 |
| AEK10233.1 | JF937107_p23 | major tail protein | phrog_4971 | major tail protein | tail | 1 | 14494 | 15336 |
| AEK10273.1 | JF937107_p64 | hypothetical protein | phrog_8720 | unknown function | unknown function | 1 | 46946 | 47749 |
| AEK10256.1 | JF937107_p47 | hypothetical protein | phrog_36951 | unknown function | unknown function | 1 | 37032 | 37244 |
| AEK10287.1 | JF937107_p78 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 57249 | 57689 |
| AEK10214.1 | JF937107_p4 | hypothetical protein | phrog_10761 | unknown function | unknown function | 1 | 1763 | 1927 |
| AEK10276.1 | JF937107_p67 | hypothetical protein | phrog_10271 | unknown function | unknown function | 1 | 48897 | 49388 |
| AEK10270.1 | JF937107_p61 | nucleotide binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44932 | 45792 |
| AEK10259.1 | JF937107_p50 | hypothetical protein | phrog_11235 | unknown function | unknown function | 1 | 38452 | 38628 |
| AEK10221.1 | JF937107_p11 | hypothetical protein | phrog_2864 | unknown function | unknown function | 1 | 8562 | 8723 |
| AEK10240.1 | JF937107_p30 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26518 | 28566 |