| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF937108 |
Definition |
Mycobacterium phage Switzer, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; Mycobacterium virus Switzer. |
DB of origin |
PVOG |
Length |
52298 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
63.75 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEK10390.1 | JF937108_p91 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51702 | 51956 |
| AEK10382.1 | JF937108_p83 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 48467 | 48784 |
| AEK10366.1 | JF937108_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43925 | 44218 |
| AEK10334.1 | JF937108_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27979 | 28170 |
| AEK10328.1 | JF937108_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23073 | 23519 |
| AEK10342.1 | JF937108_p43 | hypothetical protein | phrog_9812 | unknown function | unknown function | -1 | 31949 | 32200 |
| AEK10330.1 | JF937108_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23860 | 24207 |
| AEK10301.1 | JF937108_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 598 | 750 |
| AEK10380.1 | JF937108_p81 | hypothetical protein | phrog_9318 | unknown function | unknown function | -1 | 48132 | 48302 |
| AEK10367.1 | JF937108_p68 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44222 | 44404 |
| AEK10337.2 | JF937108_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 29527 | 31029 |
| AEK10305.1 | JF937108_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 2969 | 3649 |
| AEK10332.1 | JF937108_p33 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26078 | 27556 |
| AEK10384.1 | JF937108_p85 | hypothetical protein | phrog_4958 | unknown function | unknown function | -1 | 49772 | 50056 |
| AEK10391.1 | JF937108_p4 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1560 | 1796 |
| AEK10308.1 | JF937108_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4184 | 5617 |
| AEK10324.1 | JF937108_p25 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16505 | 18973 |
| AEK10310.1 | JF937108_p11 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 6599 | 6913 |
| AEK10302.1 | JF937108_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 747 | 1043 |
| AEK10361.1 | JF937108_p62 | hypothetical protein | phrog_3647 | unknown function | unknown function | -1 | 42222 | 42383 |
| AEK10317.1 | JF937108_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13071 | 13520 |
| AEK10306.1 | JF937108_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3659 | 3919 |
| AEK10313.1 | JF937108_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10057 | 10938 |
| AEK10373.1 | JF937108_p74 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46122 | 46808 |
| AEK10385.1 | JF937108_p86 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 50108 | 50392 |
| AEK10320.1 | JF937108_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14281 | 14727 |
| AEK10369.1 | JF937108_p70 | hypothetical protein | phrog_1311 | unknown function | unknown function | -1 | 45242 | 45382 |
| AEK10368.1 | JF937108_p69 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44431 | 45249 |
| AEK10355.1 | JF937108_p56 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39394 | 40935 |
| AEK10327.1 | JF937108_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21233 | 23035 |
| AEK10315.1 | JF937108_p16 | major capsid protease | phrog_10 | major head protein | head and packaging | 1 | 11518 | 12531 |
| AEK10336.1 | JF937108_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29091 | 29375 |
| AEK10389.1 | JF937108_p90 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 51292 | 51546 |
| AEK10307.1 | JF937108_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 3927 | 4184 |
| AEK10353.1 | JF937108_p54 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38655 | 38834 |
| AEK10386.1 | JF937108_p87 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 50560 | 50760 |
| AEK10350.1 | JF937108_p51 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36011 | 36802 |
| AEK10346.1 | JF937108_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34716 | 34946 |
| AEK10314.1 | JF937108_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10996 | 11508 |
| AEK10376.1 | JF937108_p77 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47458 | 47661 |
| AEK10379.1 | JF937108_p80 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48010 | 48135 |
| AEK10358.1 | JF937108_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41522 | 41665 |
| AEK10316.1 | JF937108_p17 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12610 | 13071 |
| AEK10348.1 | JF937108_p49 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 35503 | 35835 |
| AEK10378.1 | JF937108_p79 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47846 | 48013 |
| AEK10374.1 | JF937108_p75 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46896 | 47195 |
| AEK10362.1 | JF937108_p63 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42412 | 42783 |
| AEK10312.1 | JF937108_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8618 | 10060 |
| AEK10341.1 | JF937108_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31680 | 31952 |
| AEK10321.1 | JF937108_p22 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 14736 | 15584 |
| AEK10387.1 | JF937108_p88 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 50760 | 51095 |
| AEK10372.1 | JF937108_p73 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45685 | 46080 |
| AEK10323.1 | JF937108_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15693 | 16492 |
| AEK10331.1 | JF937108_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24232 | 26085 |
| AEK10319.1 | JF937108_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13882 | 14277 |
| AEK10322.1 | JF937108_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15693 | 16070 |
| AEK10333.1 | JF937108_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27649 | 27969 |
| AEK10347.1 | JF937108_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34977 | 35468 |
| AEK10329.1 | JF937108_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23531 | 23863 |
| AEK10309.1 | JF937108_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5607 | 6575 |
| AEK10349.1 | JF937108_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35832 | 36014 |
| AEK10344.1 | JF937108_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32616 | 34442 |
| AEK10381.1 | JF937108_p82 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48321 | 48470 |
| AEK10377.1 | JF937108_p78 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47658 | 47846 |
| AEK10371.1 | JF937108_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45497 | 45688 |
| AEK10343.1 | JF937108_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32236 | 32595 |
| AEK10345.1 | JF937108_p46 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 34465 | 34719 |
| AEK10370.1 | JF937108_p71 | hypothetical protein | phrog_36264 | unknown function | unknown function | -1 | 45379 | 45480 |
| AEK10365.1 | JF937108_p66 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43806 | 43928 |
| AEK10357.1 | JF937108_p58 | hypothetical protein | phrog_11567 | unknown function | unknown function | -1 | 41349 | 41525 |
| AEK10339.1 | JF937108_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31421 | 31591 |
| AEK10364.1 | JF937108_p65 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43636 | 43809 |
| AEK10335.1 | JF937108_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28167 | 28970 |
| AEK10352.1 | JF937108_p53 | RDF protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36940 | 38658 |
| AEK10363.1 | JF937108_p64 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42815 | 43639 |
| AEK10351.1 | JF937108_p52 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36795 | 36935 |
| AEK10383.1 | JF937108_p84 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49096 | 49767 |
| AEK10360.1 | JF937108_p61 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42139 | 42225 |
| AEK10318.1 | JF937108_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13520 | 13882 |
| AEK10340.1 | JF937108_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31588 | 31683 |
| AEK10325.1 | JF937108_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18997 | 21054 |
| AEK10388.1 | JF937108_p89 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51116 | 51214 |
| AEK10356.1 | JF937108_p57 | DNA primase | phrog_1783 | unknown function | unknown function | -1 | 41188 | 41349 |
| AEK10311.1 | JF937108_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6933 | 8621 |
| AEK10303.1 | JF937108_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1078 | 1512 |
| AEK10375.1 | JF937108_p76 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47192 | 47461 |
| AEK10326.1 | JF937108_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21051 | 21233 |
| AEK10338.1 | JF937108_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31152 | 31424 |
| AEK10304.1 | JF937108_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 1853 | 2950 |
| AEK10359.1 | JF937108_p60 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41685 | 42152 |
| AEK10354.1 | JF937108_p55 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38831 | 39397 |