Genomic map of Mycobacterium phage Switzer (JF937108)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JF937108
Definition
Mycobacterium phage Switzer, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; Mycobacterium virus Switzer.
DB of origin
PVOG
Length
52298
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
91
%GC
63.75
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEK10390.1 JF937108_p91 hypothetical protein phrog_828 unknown function unknown function -1 51702 51956
AEK10382.1 JF937108_p83 hypothetical protein phrog_4631 unknown function unknown function -1 48467 48784
AEK10366.1 JF937108_p67 hypothetical protein phrog_520 unknown function unknown function -1 43925 44218
AEK10334.1 JF937108_p35 hypothetical protein phrog_1560 unknown function unknown function 1 27979 28170
AEK10328.1 JF937108_p29 hypothetical protein phrog_352 minor tail protein tail 1 23073 23519
AEK10342.1 JF937108_p43 hypothetical protein phrog_9812 unknown function unknown function -1 31949 32200
AEK10330.1 JF937108_p31 hypothetical protein phrog_1397 unknown function unknown function 1 23860 24207
AEK10301.1 JF937108_p1 hypothetical protein phrog_4649 unknown function unknown function 1 598 750
AEK10380.1 JF937108_p81 hypothetical protein phrog_9318 unknown function unknown function -1 48132 48302
AEK10367.1 JF937108_p68 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44222 44404
AEK10337.2 JF937108_p38 integrase phrog_95 integrase integration and excision 1 29527 31029
AEK10305.1 JF937108_p6 hypothetical protein phrog_553 minor tail protein tail 1 2969 3649
AEK10332.1 JF937108_p33 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 26078 27556
AEK10384.1 JF937108_p85 hypothetical protein phrog_4958 unknown function unknown function -1 49772 50056
AEK10391.1 JF937108_p4 hypothetical protein phrog_7087 unknown function unknown function 1 1560 1796
AEK10308.1 JF937108_p9 lysin A phrog_317 endolysin lysis 1 4184 5617
AEK10324.1 JF937108_p25 tapemeasure protein phrog_305 tail length tape measure protein tail 1 16505 18973
AEK10310.1 JF937108_p11 hypothetical protein phrog_419 unknown function unknown function 1 6599 6913
AEK10302.1 JF937108_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 747 1043
AEK10361.1 JF937108_p62 hypothetical protein phrog_3647 unknown function unknown function -1 42222 42383
AEK10317.1 JF937108_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13071 13520
AEK10306.1 JF937108_p7 hypothetical protein phrog_1718 tail protein tail 1 3659 3919
AEK10313.1 JF937108_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10057 10938
AEK10373.1 JF937108_p74 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46122 46808
AEK10385.1 JF937108_p86 hypothetical protein phrog_3414 unknown function unknown function -1 50108 50392
AEK10320.1 JF937108_p21 hypothetical protein phrog_123 tail terminator connector 1 14281 14727
AEK10369.1 JF937108_p70 hypothetical protein phrog_1311 unknown function unknown function -1 45242 45382
AEK10368.1 JF937108_p69 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44431 45249
AEK10355.1 JF937108_p56 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39394 40935
AEK10327.1 JF937108_p28 minor tail protein phrog_110 minor tail protein tail 1 21233 23035
AEK10315.1 JF937108_p16 major capsid protease phrog_10 major head protein head and packaging 1 11518 12531
AEK10336.1 JF937108_p37 hypothetical protein phrog_411 unknown function unknown function 1 29091 29375
AEK10389.1 JF937108_p90 hypothetical protein phrog_5419 unknown function unknown function -1 51292 51546
AEK10307.1 JF937108_p8 hypothetical protein phrog_747 unknown function unknown function 1 3927 4184
AEK10353.1 JF937108_p54 hypothetical protein phrog_1503 unknown function unknown function -1 38655 38834
AEK10386.1 JF937108_p87 hypothetical protein phrog_1387 unknown function unknown function -1 50560 50760
AEK10350.1 JF937108_p51 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36011 36802
AEK10346.1 JF937108_p47 hypothetical protein phrog_1781 unknown function unknown function -1 34716 34946
AEK10314.1 JF937108_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 10996 11508
AEK10376.1 JF937108_p77 hypothetical protein phrog_1387 unknown function unknown function -1 47458 47661
AEK10379.1 JF937108_p80 hypothetical protein phrog_2093 unknown function unknown function -1 48010 48135
AEK10358.1 JF937108_p59 hypothetical protein phrog_397 unknown function unknown function -1 41522 41665
AEK10316.1 JF937108_p17 hypothetical protein phrog_1857 head-tail connector protein connector 1 12610 13071
AEK10348.1 JF937108_p49 hypothetical protein phrog_2094 unknown function unknown function -1 35503 35835
AEK10378.1 JF937108_p79 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 47846 48013
AEK10374.1 JF937108_p75 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46896 47195
AEK10362.1 JF937108_p63 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42412 42783
AEK10312.1 JF937108_p13 portal protein phrog_104 portal protein head and packaging 1 8618 10060
AEK10341.1 JF937108_p42 hypothetical protein phrog_1971 unknown function unknown function -1 31680 31952
AEK10321.1 JF937108_p22 hypothetical protein phrog_117 major tail protein tail 1 14736 15584
AEK10387.1 JF937108_p88 hypothetical protein phrog_5542 unknown function unknown function -1 50760 51095
AEK10372.1 JF937108_p73 hypothetical protein phrog_1809 unknown function unknown function -1 45685 46080
AEK10323.1 JF937108_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15693 16492
AEK10331.1 JF937108_p32 minor tail protein phrog_346 minor tail protein tail 1 24232 26085
AEK10319.1 JF937108_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13882 14277
AEK10322.1 JF937108_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15693 16070
AEK10333.1 JF937108_p34 hypothetical protein phrog_644 unknown function unknown function 1 27649 27969
AEK10347.1 JF937108_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34977 35468
AEK10329.1 JF937108_p30 hypothetical protein phrog_981 minor tail protein tail 1 23531 23863
AEK10309.1 JF937108_p10 lysin B phrog_102 endolysin lysis 1 5607 6575
AEK10349.1 JF937108_p50 hypothetical protein phrog_499 unknown function unknown function -1 35832 36014
AEK10344.1 JF937108_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32616 34442
AEK10381.1 JF937108_p82 hypothetical protein phrog_932 unknown function unknown function -1 48321 48470
AEK10377.1 JF937108_p78 hypothetical protein phrog_1155 unknown function unknown function -1 47658 47846
AEK10371.1 JF937108_p72 hypothetical protein singleton unknown function unknown function -1 45497 45688
AEK10343.1 JF937108_p44 hypothetical protein phrog_383 unknown function unknown function -1 32236 32595
AEK10345.1 JF937108_p46 hypothetical protein phrog_6173 unknown function unknown function -1 34465 34719
AEK10370.1 JF937108_p71 hypothetical protein phrog_36264 unknown function unknown function -1 45379 45480
AEK10365.1 JF937108_p66 hypothetical protein phrog_1705 unknown function unknown function -1 43806 43928
AEK10357.1 JF937108_p58 hypothetical protein phrog_11567 unknown function unknown function -1 41349 41525
AEK10339.1 JF937108_p40 hypothetical protein phrog_2035 unknown function unknown function -1 31421 31591
AEK10364.1 JF937108_p65 hypothetical protein phrog_2507 unknown function unknown function -1 43636 43809
AEK10335.1 JF937108_p36 hypothetical protein phrog_754 minor tail protein tail 1 28167 28970
AEK10352.1 JF937108_p53 RDF protein phrog_221 metallo-phosphoesterase other -1 36940 38658
AEK10363.1 JF937108_p64 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42815 43639
AEK10351.1 JF937108_p52 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36795 36935
AEK10383.1 JF937108_p84 DNA methylase phrog_363 DNA methyltransferase other -1 49096 49767
AEK10360.1 JF937108_p61 hypothetical protein phrog_1019 unknown function unknown function -1 42139 42225
AEK10318.1 JF937108_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 13520 13882
AEK10340.1 JF937108_p41 hypothetical protein phrog_1860 unknown function unknown function -1 31588 31683
AEK10325.1 JF937108_p26 minor tail protein phrog_106 minor tail protein tail 1 18997 21054
AEK10388.1 JF937108_p89 hypothetical protein phrog_2212 unknown function unknown function -1 51116 51214
AEK10356.1 JF937108_p57 DNA primase phrog_1783 unknown function unknown function -1 41188 41349
AEK10311.1 JF937108_p12 terminase phrog_9 terminase large subunit head and packaging 1 6933 8621
AEK10303.1 JF937108_p3 hypothetical protein phrog_226 minor tail protein tail 1 1078 1512
AEK10375.1 JF937108_p76 hypothetical protein phrog_1720 unknown function unknown function -1 47192 47461
AEK10326.1 JF937108_p27 hypothetical protein phrog_1543 minor tail protein tail 1 21051 21233
AEK10338.1 JF937108_p39 hypothetical protein phrog_1966 unknown function unknown function -1 31152 31424
AEK10304.1 JF937108_p5 hypothetical protein phrog_1197 tail protein tail 1 1853 2950
AEK10359.1 JF937108_p60 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41685 42152
AEK10354.1 JF937108_p55 hypothetical protein phrog_1167 phosphofructokinase other -1 38831 39397