| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JF957060 |
Definition |
Mycobacterium phage Timshel, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; Mycobacterium virus Timshel. |
DB of origin |
PVOG |
Length |
53278 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
85 |
%GC |
63.14 |
Number of singletons |
5 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEJ92348.1 | JF957060_p85 | hypothetical protein | phrog_16818 | unknown function | unknown function | -1 | 51945 | 52199 |
| AEJ92343.1 | JF957060_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 24668 | 25138 |
| AEJ92316.1 | JF957060_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 408 | 704 |
| AEJ92319.1 | JF957060_p4 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 1567 | 2319 |
| AEJ92327.1 | JF957060_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 10002 | 11459 |
| AEJ92317.1 | JF957060_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 743 | 1177 |
| AEJ92341.1 | JF957060_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20872 | 22854 |
| AEJ92371.1 | JF957060_p62 | hypothetical protein | phrog_33942 | unknown function | unknown function | -1 | 43147 | 43329 |
| AEJ92350.1 | JF957060_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51081 | 51314 |
| AEJ92324.1 | JF957060_p9 | hypothetical protein | phrog_526 | holin | lysis | 1 | 6896 | 7309 |
| AEJ92384.1 | JF957060_p48 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36655 | 37554 |
| AEJ92353.1 | JF957060_p80 | hypothetical protein | phrog_15203 | unknown function | unknown function | -1 | 50407 | 50520 |
| AEJ92345.1 | JF957060_p30 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 25553 | 25981 |
| AEJ92376.1 | JF957060_p56 | recombination endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41023 | 41460 |
| AEJ92352.1 | JF957060_p81 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 50517 | 50786 |
| AEJ92369.1 | JF957060_p64 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 43391 | 43612 |
| AEJ92397.1 | JF957060_p35 | cytidine deaminase | phrog_2369 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 29732 | 30226 |
| AEJ92365.1 | JF957060_p68 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45610 | 46410 |
| AEJ92373.1 | JF957060_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42786 | 43007 |
| AEJ92395.1 | JF957060_p37 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 30323 | 30511 |
| AEJ92321.1 | JF957060_p6 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 3592 | 4380 |
| AEJ92351.1 | JF957060_p82 | hypothetical protein | phrog_2246 | unknown function | unknown function | -1 | 50786 | 50992 |
| AEJ92372.1 | JF957060_p61 | hypothetical protein | phrog_27222 | unknown function | unknown function | -1 | 43004 | 43147 |
| AEJ92354.1 | JF957060_p79 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49888 | 50322 |
| AEJ92378.1 | JF957060_p54 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39932 | 40336 |
| AEJ92349.1 | JF957060_p84 | hypothetical protein | phrog_3842 | unknown function | unknown function | -1 | 51319 | 51894 |
| AEJ92346.1 | JF957060_p31 | hypothetical protein | phrog_2683 | minor tail protein | tail | 1 | 25993 | 27456 |
| AEJ92328.1 | JF957060_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11456 | 12469 |
| AEJ92360.1 | JF957060_p73 | hypothetical protein | phrog_1342 | unknown function | unknown function | -1 | 47875 | 48213 |
| AEJ92332.1 | JF957060_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14276 | 14650 |
| AEJ92357.1 | JF957060_p76 | hypothetical protein | phrog_5664 | unknown function | unknown function | -1 | 48701 | 49081 |
| AEJ92340.1 | JF957060_p25 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17496 | 20864 |
| AEJ92331.1 | JF957060_p16 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 14080 | 14268 |
| AEJ92381.1 | JF957060_p51 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 38836 | 39204 |
| AEJ92337.1 | JF957060_p22 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 16007 | 16594 |
| AEJ92380.1 | JF957060_p52 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 39197 | 39472 |
| AEJ92379.1 | JF957060_p53 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39469 | 40008 |
| AEJ92400.1 | JF957060_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41457 | 41522 |
| AEJ92335.1 | JF957060_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15196 | 15540 |
| AEJ92391.1 | JF957060_p41 | hypothetical protein | phrog_7968 | unknown function | unknown function | -1 | 31332 | 31481 |
| AEJ92322.1 | JF957060_p7 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 4377 | 5294 |
| AEJ92390.1 | JF957060_p42 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 31495 | 33330 |
| AEJ92364.1 | JF957060_p69 | hypothetical protein | phrog_4421 | unknown function | unknown function | -1 | 46385 | 46669 |
| AEJ92377.1 | JF957060_p55 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 40329 | 41030 |
| AEJ92385.1 | JF957060_p47 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34610 | 36658 |
| AEJ92320.1 | JF957060_p5 | structural protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 2345 | 3565 |
| AEJ92326.1 | JF957060_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 8311 | 10005 |
| AEJ92342.1 | JF957060_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 22851 | 24653 |
| AEJ92336.1 | JF957060_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 15549 | 15992 |
| AEJ92355.1 | JF957060_p78 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 49745 | 49897 |
| AEJ92333.1 | JF957060_p18 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 14647 | 14814 |
| AEJ92318.1 | JF957060_p3 | tail protein | phrog_1126 | unknown function | unknown function | 1 | 1254 | 1577 |
| AEJ92358.1 | JF957060_p75 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 48517 | 48693 |
| AEJ92387.1 | JF957060_p45 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 33800 | 34012 |
| AEJ92393.1 | JF957060_p39 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 30693 | 31082 |
| AEJ92366.1 | JF957060_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 45218 | 45505 |
| AEJ92344.1 | JF957060_p29 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 25135 | 25563 |
| AEJ92370.1 | JF957060_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43326 | 43394 |
| AEJ92383.1 | JF957060_p49 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 37551 | 38321 |
| AEJ92361.1 | JF957060_p72 | hypothetical protein | phrog_5371 | unknown function | unknown function | -1 | 47633 | 47878 |
| AEJ92325.1 | JF957060_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 7306 | 8283 |
| AEJ92362.1 | JF957060_p71 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 47480 | 47629 |
| AEJ92334.1 | JF957060_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14811 | 15194 |
| AEJ92389.1 | JF957060_p43 | hypothetical protein | phrog_18021 | unknown function | unknown function | -1 | 33341 | 33544 |
| AEJ92368.1 | JF957060_p65 | hypothetical protein | phrog_2068 | phosphoribosyl transferase | other | -1 | 43648 | 44325 |
| AEJ92386.1 | JF957060_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34079 | 34579 |
| AEJ92367.1 | JF957060_p66 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 44347 | 45147 |
| AEJ92399.1 | JF957060_p33 | integrase | phrog_95 | integrase | integration and excision | -1 | 27832 | 29292 |
| AEJ92323.1 | JF957060_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 5547 | 6899 |
| AEJ92388.1 | JF957060_p44 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 33541 | 33822 |
| AEJ92330.1 | JF957060_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 13055 | 14014 |
| AEJ92359.1 | JF957060_p74 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48227 | 48520 |
| AEJ92392.1 | JF957060_p40 | hypothetical protein | phrog_2019 | unknown function | unknown function | -1 | 31072 | 31335 |
| AEJ92339.1 | JF957060_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16706 | 17496 |
| AEJ92329.1 | JF957060_p14 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12520 | 13020 |
| AEJ92356.1 | JF957060_p77 | SprT | phrog_1006 | unknown function | unknown function | -1 | 49266 | 49748 |
| AEJ92338.1 | JF957060_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16706 | 17068 |
| AEJ92347.1 | JF957060_p32 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 27459 | 27785 |
| AEJ92396.1 | JF957060_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30219 | 30326 |
| AEJ92398.1 | JF957060_p34 | hypothetical protein | phrog_2697 | unknown function | unknown function | -1 | 29492 | 29722 |
| AEJ92382.1 | JF957060_p50 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38318 | 38839 |
| AEJ92394.1 | JF957060_p38 | hypothetical protein | phrog_31400 | unknown function | unknown function | -1 | 30508 | 30693 |
| AEJ92374.1 | JF957060_p59 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 42340 | 42789 |
| AEJ92375.1 | JF957060_p58 | esterase/lipase | phrog_789 | esterase/lipase | other | -1 | 41522 | 42343 |
| AEJ92363.1 | JF957060_p70 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46681 | 47187 |