Genomic map of Mycobacterium phage Timshel (JF957060)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JF957060
Definition
Mycobacterium phage Timshel, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; Mycobacterium virus Timshel.
DB of origin
PVOG
Length
53278
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
85
%GC
63.14
Number of singletons
5
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEJ92348.1 JF957060_p85 hypothetical protein phrog_16818 unknown function unknown function -1 51945 52199
AEJ92343.1 JF957060_p28 hypothetical protein phrog_352 minor tail protein tail 1 24668 25138
AEJ92316.1 JF957060_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 408 704
AEJ92319.1 JF957060_p4 hypothetical protein phrog_819 tail protein tail 1 1567 2319
AEJ92327.1 JF957060_p12 portal protein phrog_104 portal protein head and packaging 1 10002 11459
AEJ92317.1 JF957060_p2 hypothetical protein phrog_226 minor tail protein tail 1 743 1177
AEJ92341.1 JF957060_p26 minor tail protein phrog_106 minor tail protein tail 1 20872 22854
AEJ92371.1 JF957060_p62 hypothetical protein phrog_33942 unknown function unknown function -1 43147 43329
AEJ92350.1 JF957060_p83 hypothetical protein singleton unknown function unknown function -1 51081 51314
AEJ92324.1 JF957060_p9 hypothetical protein phrog_526 holin lysis 1 6896 7309
AEJ92384.1 JF957060_p48 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36655 37554
AEJ92353.1 JF957060_p80 hypothetical protein phrog_15203 unknown function unknown function -1 50407 50520
AEJ92345.1 JF957060_p30 hypothetical protein phrog_726 unknown function unknown function 1 25553 25981
AEJ92376.1 JF957060_p56 recombination endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41023 41460
AEJ92352.1 JF957060_p81 hypothetical protein phrog_828 unknown function unknown function -1 50517 50786
AEJ92369.1 JF957060_p64 hypothetical protein phrog_397 unknown function unknown function -1 43391 43612
AEJ92397.1 JF957060_p35 cytidine deaminase phrog_2369 dCMP deaminase DNA, RNA and nucleotide metabolism -1 29732 30226
AEJ92365.1 JF957060_p68 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 45610 46410
AEJ92373.1 JF957060_p60 hypothetical protein singleton unknown function unknown function -1 42786 43007
AEJ92395.1 JF957060_p37 hypothetical protein phrog_2046 unknown function unknown function -1 30323 30511
AEJ92321.1 JF957060_p6 hypothetical protein phrog_819 tail protein tail 1 3592 4380
AEJ92351.1 JF957060_p82 hypothetical protein phrog_2246 unknown function unknown function -1 50786 50992
AEJ92372.1 JF957060_p61 hypothetical protein phrog_27222 unknown function unknown function -1 43004 43147
AEJ92354.1 JF957060_p79 hypothetical protein phrog_586 unknown function unknown function -1 49888 50322
AEJ92378.1 JF957060_p54 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39932 40336
AEJ92349.1 JF957060_p84 hypothetical protein phrog_3842 unknown function unknown function -1 51319 51894
AEJ92346.1 JF957060_p31 hypothetical protein phrog_2683 minor tail protein tail 1 25993 27456
AEJ92328.1 JF957060_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11456 12469
AEJ92360.1 JF957060_p73 hypothetical protein phrog_1342 unknown function unknown function -1 47875 48213
AEJ92332.1 JF957060_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 14276 14650
AEJ92357.1 JF957060_p76 hypothetical protein phrog_5664 unknown function unknown function -1 48701 49081
AEJ92340.1 JF957060_p25 tapemeasure protein phrog_305 tail length tape measure protein tail 1 17496 20864
AEJ92331.1 JF957060_p16 hypothetical protein phrog_748 head-tail connector protein connector 1 14080 14268
AEJ92381.1 JF957060_p51 hypothetical protein phrog_2387 nucleotide kinase other -1 38836 39204
AEJ92337.1 JF957060_p22 major tail subunit phrog_117 major tail protein tail 1 16007 16594
AEJ92380.1 JF957060_p52 hypothetical protein phrog_5618 unknown function unknown function -1 39197 39472
AEJ92379.1 JF957060_p53 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39469 40008
AEJ92400.1 JF957060_p57 hypothetical protein singleton unknown function unknown function -1 41457 41522
AEJ92335.1 JF957060_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15196 15540
AEJ92391.1 JF957060_p41 hypothetical protein phrog_7968 unknown function unknown function -1 31332 31481
AEJ92322.1 JF957060_p7 hypothetical protein phrog_754 minor tail protein tail 1 4377 5294
AEJ92390.1 JF957060_p42 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 31495 33330
AEJ92364.1 JF957060_p69 hypothetical protein phrog_4421 unknown function unknown function -1 46385 46669
AEJ92377.1 JF957060_p55 DNA methylase phrog_363 DNA methyltransferase other -1 40329 41030
AEJ92385.1 JF957060_p47 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 34610 36658
AEJ92320.1 JF957060_p5 structural protein phrog_382 minor tail protein with lysin activity tail 1 2345 3565
AEJ92326.1 JF957060_p11 terminase phrog_9 terminase large subunit head and packaging 1 8311 10005
AEJ92342.1 JF957060_p27 minor tail protein phrog_110 minor tail protein tail 1 22851 24653
AEJ92336.1 JF957060_p21 hypothetical protein phrog_123 tail terminator connector 1 15549 15992
AEJ92355.1 JF957060_p78 hypothetical protein phrog_855 unknown function unknown function -1 49745 49897
AEJ92333.1 JF957060_p18 hypothetical protein phrog_830 head-tail connector protein connector 1 14647 14814
AEJ92318.1 JF957060_p3 tail protein phrog_1126 unknown function unknown function 1 1254 1577
AEJ92358.1 JF957060_p75 hypothetical protein phrog_519 unknown function unknown function -1 48517 48693
AEJ92387.1 JF957060_p45 hypothetical protein phrog_690 unknown function unknown function -1 33800 34012
AEJ92393.1 JF957060_p39 hypothetical protein phrog_383 unknown function unknown function -1 30693 31082
AEJ92366.1 JF957060_p67 hypothetical protein phrog_520 unknown function unknown function -1 45218 45505
AEJ92344.1 JF957060_p29 hypothetical protein phrog_1298 minor tail protein tail 1 25135 25563
AEJ92370.1 JF957060_p63 hypothetical protein singleton unknown function unknown function -1 43326 43394
AEJ92383.1 JF957060_p49 hypothetical protein phrog_221 metallo-phosphoesterase other -1 37551 38321
AEJ92361.1 JF957060_p72 hypothetical protein phrog_5371 unknown function unknown function -1 47633 47878
AEJ92325.1 JF957060_p10 lysin B phrog_102 endolysin lysis 1 7306 8283
AEJ92362.1 JF957060_p71 hypothetical protein phrog_1173 unknown function unknown function -1 47480 47629
AEJ92334.1 JF957060_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 14811 15194
AEJ92389.1 JF957060_p43 hypothetical protein phrog_18021 unknown function unknown function -1 33341 33544
AEJ92368.1 JF957060_p65 hypothetical protein phrog_2068 phosphoribosyl transferase other -1 43648 44325
AEJ92386.1 JF957060_p46 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34079 34579
AEJ92367.1 JF957060_p66 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 44347 45147
AEJ92399.1 JF957060_p33 integrase phrog_95 integrase integration and excision -1 27832 29292
AEJ92323.1 JF957060_p8 lysin A phrog_317 endolysin lysis 1 5547 6899
AEJ92388.1 JF957060_p44 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 33541 33822
AEJ92330.1 JF957060_p15 major capsid protein phrog_10 major head protein head and packaging 1 13055 14014
AEJ92359.1 JF957060_p74 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 48227 48520
AEJ92392.1 JF957060_p40 hypothetical protein phrog_2019 unknown function unknown function -1 31072 31335
AEJ92339.1 JF957060_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16706 17496
AEJ92329.1 JF957060_p14 scaffold protein phrog_233 head scaffolding protein head and packaging 1 12520 13020
AEJ92356.1 JF957060_p77 SprT phrog_1006 unknown function unknown function -1 49266 49748
AEJ92338.1 JF957060_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16706 17068
AEJ92347.1 JF957060_p32 hypothetical protein phrog_2235 minor tail protein tail 1 27459 27785
AEJ92396.1 JF957060_p36 hypothetical protein singleton unknown function unknown function -1 30219 30326
AEJ92398.1 JF957060_p34 hypothetical protein phrog_2697 unknown function unknown function -1 29492 29722
AEJ92382.1 JF957060_p50 hypothetical protein phrog_1167 phosphofructokinase other -1 38318 38839
AEJ92394.1 JF957060_p38 hypothetical protein phrog_31400 unknown function unknown function -1 30508 30693
AEJ92374.1 JF957060_p59 hypothetical protein phrog_289 GTP-binding domain other -1 42340 42789
AEJ92375.1 JF957060_p58 esterase/lipase phrog_789 esterase/lipase other -1 41522 42343
AEJ92363.1 JF957060_p70 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46681 47187