Genomic map of Mycobacterium phage Rakim (JN006062)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JN006062
Definition
Mycobacterium phage Rakim, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus.
DB of origin
PVOG
Length
75706
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
145
%GC
62.85
Number of singletons
0
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEJ92666.1 JN006062_p47 hypothetical protein phrog_4396 unknown function unknown function -1 35843 35971
AEJ92667.1 JN006062_p46 hypothetical protein phrog_6127 unknown function unknown function -1 35733 35846
AEJ92619.1 JN006062_p102 protease phrog_94 head maturation protease head and packaging 1 59964 60743
AEJ92561.1 JN006062_p23 tapemeasure protein phrog_2723 tail length tape measure protein tail 1 13447 18180
AEJ92581.1 JN006062_p62 hypothetical protein phrog_2800 unknown function unknown function 1 41960 42238
AEJ92684.1 JN006062_p135 hypothetical protein phrog_3730 unknown function unknown function -1 72033 72143
AEJ92618.1 JN006062_p101 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 59237 59848
AEJ92542.1 JN006062_p2 hypothetical protein phrog_4110 unknown function unknown function 1 267 449
AEJ92591.1 JN006062_p73 hypothetical protein phrog_1389 unknown function unknown function 1 47029 47397
AEJ92676.1 JN006062_p9 hypothetical protein phrog_2202 unknown function unknown function -1 2156 2464
AEJ92638.1 JN006062_p123 hypothetical protein phrog_2296 unknown function unknown function 1 67954 68079
AEJ92550.1 JN006062_p12 portal protein phrog_12 portal protein head and packaging 1 5392 6948
AEJ92563.1 JN006062_p25 minor tail protein phrog_110 minor tail protein tail 1 19943 21538
AEJ92600.1 JN006062_p82 DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 50096 51358
AEJ92658.1 JN006062_p57 hypothetical protein phrog_2745 transcriptional repressor transcription regulation -1 40084 40515
AEJ92680.1 JN006062_p100 endonuclease VII phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 58852 59415
AEJ92607.1 JN006062_p89 polynucleotide kinase phrog_505 polynucleotide kinase other 1 52922 53863
AEJ92592.1 JN006062_p74 hypothetical protein phrog_572 unknown function unknown function 1 47394 47768
AEJ92594.1 JN006062_p76 hypothetical protein phrog_2793 unknown function unknown function 1 47944 48177
AEJ92685.1 JN006062_p142 hypothetical protein phrog_5970 unknown function unknown function -1 73976 74233
AEJ92659.1 JN006062_p56 hypothetical protein phrog_950 unknown function unknown function -1 39216 39965
AEJ92579.1 JN006062_p60 hypothetical protein phrog_923 unknown function unknown function 1 40970 41815
AEJ92643.1 JN006062_p145 hypothetical protein phrog_2762 unknown function unknown function 1 74914 75135
AEJ92576.1 JN006062_p54 integrase phrog_1 integrase integration and excision 1 37979 38860
AEJ92587.1 JN006062_p69 hypothetical protein phrog_572 unknown function unknown function 1 45127 45537
AEJ92647.1 JN006062_p139 hypothetical protein phrog_1438 unknown function unknown function -1 73349 73522
AEJ92582.1 JN006062_p63 hypothetical protein phrog_2744 unknown function unknown function 1 42782 43087
AEJ92648.1 JN006062_p138 hypothetical protein phrog_3174 unknown function unknown function -1 72952 73344
AEJ92629.1 JN006062_p112 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 63855 64448
AEJ92562.1 JN006062_p24 minor tail protein phrog_106 minor tail protein tail 1 18210 19871
AEJ92556.1 JN006062_p18 hypothetical protein phrog_2805 minor tail protein tail 1 10703 11083
AEJ92585.1 JN006062_p67 hypothetical protein phrog_762 unknown function unknown function 1 43836 44165
AEJ92664.1 JN006062_p49 hypothetical protein phrog_2893 unknown function unknown function -1 36135 36305
AEJ92570.1 JN006062_p33 lysin A phrog_317 endolysin lysis 1 29747 31249
AEJ92564.1 JN006062_p26 minor tail protein phrog_732 minor tail protein tail 1 21559 22380
AEJ92615.1 JN006062_p97 hypothetical protein phrog_889 unknown function unknown function 1 57498 57941
AEJ92656.1 JN006062_p128 ParB-like nuclease domain phrog_2579 ParB C-terminal domain DNA, RNA and nucleotide metabolism -1 69170 69559
AEJ92544.1 JN006062_p4 hypothetical protein phrog_2775 unknown function unknown function 1 601 786
AEJ92588.1 JN006062_p70 Erf phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 45530 46252
AEJ92675.1 JN006062_p31 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 29080 29256
AEJ92541.1 JN006062_p1 hypothetical protein phrog_3456 unknown function unknown function 1 34 270
AEJ92596.1 JN006062_p78 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 48584 48901
AEJ92660.1 JN006062_p53 hypothetical protein phrog_2847 unknown function unknown function -1 37426 37728
AEJ92616.1 JN006062_p98 hypothetical protein phrog_2788 unknown function unknown function 1 57943 58278
AEJ92567.1 JN006062_p29 hypothetical protein phrog_553 minor tail protein tail 1 27631 28575
AEJ92661.1 JN006062_p52 hypothetical protein phrog_2759 unknown function unknown function -1 36744 37139
AEJ92559.1 JN006062_p21 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 12583 13044
AEJ92634.1 JN006062_p117 hypothetical protein phrog_2755 unknown function unknown function 1 66574 66747
AEJ92558.1 JN006062_p20 major tail subunit phrog_476 major tail protein tail 1 11492 12463
AEJ92633.1 JN006062_p116 hypothetical protein phrog_2965 unknown function unknown function 1 66450 66587
AEJ92612.1 JN006062_p94 WhiB family transcription factor phrog_472 WhiB transcriptional factor transcription regulation 1 56610 56870
AEJ92601.1 JN006062_p83 hypothetical protein phrog_1091 unknown function unknown function 1 51355 51543
AEJ92611.1 JN006062_p93 hypothetical protein phrog_1590 unknown function unknown function 1 55792 56613
AEJ92620.1 JN006062_p103 hypothetical protein phrog_1454 unknown function unknown function 1 60745 60942
AEJ92571.1 JN006062_p34 holin phrog_526 holin lysis 1 31253 31636
AEJ92635.1 JN006062_p120 hypothetical protein phrog_2174 unknown function unknown function 1 67136 67597
AEJ92621.1 JN006062_p104 hypothetical protein phrog_2785 unknown function unknown function 1 60939 61295
AEJ92551.1 JN006062_p13 hypothetical protein phrog_2753 head maturation protease head and packaging 1 6951 7952
AEJ92606.1 JN006062_p88 hypothetical protein phrog_2894 unknown function unknown function 1 52573 52767
AEJ92577.1 JN006062_p55 hypothetical protein phrog_2842 unknown function unknown function 1 38999 39238
AEJ92568.1 JN006062_p30 hypothetical protein phrog_644 unknown function unknown function 1 28655 29083
AEJ92670.1 JN006062_p43 hypothetical protein phrog_5831 unknown function unknown function -1 35023 35205
AEJ92642.1 JN006062_p144 hypothetical protein phrog_2904 unknown function unknown function 1 74492 74839
AEJ92654.1 JN006062_p130 hypothetical protein phrog_3034 unknown function unknown function -1 70000 70368
AEJ92610.1 JN006062_p92 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 54430 55755
AEJ92603.1 JN006062_p85 hypothetical protein phrog_2747 unknown function unknown function 1 51775 51993
AEJ92636.1 JN006062_p121 hypothetical protein phrog_2764 unknown function unknown function 1 67594 67761
AEJ92679.1 JN006062_p64 hypothetical protein phrog_3463 unknown function unknown function 1 43106 43213
AEJ92586.1 JN006062_p68 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 44162 45130
AEJ92625.1 JN006062_p108 hypothetical protein phrog_2846 unknown function unknown function 1 62679 62903
AEJ92665.1 JN006062_p48 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 35971 36138
AEJ92640.1 JN006062_p125 hypothetical protein phrog_2897 unknown function unknown function 1 68255 68386
AEJ92593.1 JN006062_p75 hypothetical protein phrog_1622 unknown function unknown function 1 47768 47947
AEJ92572.1 JN006062_p35 hypothetical protein phrog_2424 unknown function unknown function 1 31629 31967
AEJ92553.1 JN006062_p15 hypothetical protein phrog_2796 head-tail connector protein connector 1 9601 9792
AEJ92617.1 JN006062_p99 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 58311 58811
AEJ92569.1 JN006062_p32 hypothetical protein phrog_411 unknown function unknown function 1 29389 29673
AEJ92557.1 JN006062_p19 hypothetical protein phrog_813 head-tail adaptor connector 1 11061 11465
AEJ92626.1 JN006062_p109 hypothetical protein phrog_1042 unknown function unknown function 1 62900 63163
AEJ92653.1 JN006062_p131 hypothetical protein phrog_1915 unknown function unknown function -1 70365 70829
AEJ92623.1 JN006062_p106 hypothetical protein phrog_1969 unknown function unknown function 1 61570 61881
AEJ92545.1 JN006062_p5 hypothetical protein phrog_3858 unknown function unknown function 1 813 1064
AEJ92595.1 JN006062_p77 hypothetical protein phrog_289 GTP-binding domain other 1 48174 48587
AEJ92645.1 JN006062_p141 hypothetical protein phrog_2795 unknown function unknown function -1 73761 73973
AEJ92671.1 JN006062_p42 hypothetical protein phrog_3472 unknown function unknown function -1 34772 35026
AEJ92602.1 JN006062_p84 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 51525 51800
AEJ92650.1 JN006062_p136 hypothetical protein phrog_2287 unknown function unknown function -1 72148 72384
AEJ92662.1 JN006062_p51 hypothetical protein phrog_2815 unknown function unknown function -1 36598 36744
AEJ92627.1 JN006062_p110 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 63174 63548
AEJ92681.1 JN006062_p118 hypothetical protein phrog_2279 unknown function unknown function 1 66740 66952
AEJ92613.1 JN006062_p95 hypothetical protein phrog_2853 unknown function unknown function 1 56887 57045
AEJ92632.1 JN006062_p115 RecA phrog_97 UvsX-like recombinase other 1 65491 66453
AEJ92682.1 JN006062_p119 hypothetical protein phrog_3062 unknown function unknown function 1 66933 67187
AEJ92549.1 JN006062_p11 hypothetical protein phrog_2845 unknown function unknown function 1 5184 5405
AEJ92578.1 JN006062_p59 hypothetical protein phrog_2852 unknown function unknown function 1 40836 40973
AEJ92639.1 JN006062_p124 hypothetical protein phrog_2925 unknown function unknown function 1 68076 68255
AEJ92574.1 JN006062_p37 hypothetical protein phrog_726 unknown function unknown function 1 32818 33234
AEJ92589.1 JN006062_p71 hypothetical protein phrog_2750 unknown function unknown function 1 46245 46556
AEJ92604.1 JN006062_p86 hypothetical protein phrog_1503 unknown function unknown function 1 51990 52217
AEJ92590.1 JN006062_p72 hypothetical protein phrog_2771 unknown function unknown function 1 46556 47029
AEJ92573.1 JN006062_p36 lysin B phrog_102 endolysin lysis 1 31964 32821
AEJ92546.1 JN006062_p6 hypothetical protein phrog_83 terminase small subunit head and packaging 1 1057 1518
AEJ92614.1 JN006062_p96 hypothetical protein phrog_889 unknown function unknown function 1 57042 57494
AEJ92668.1 JN006062_p45 hypothetical protein phrog_722 unknown function unknown function -1 35411 35740
AEJ92669.1 JN006062_p44 hypothetical protein phrog_3447 unknown function unknown function -1 35202 35414
AEJ92652.1 JN006062_p132 hypothetical protein phrog_1587 unknown function unknown function -1 70844 71173
AEJ92566.1 JN006062_p28 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 24790 27630
AEJ92597.1 JN006062_p79 hypothetical protein phrog_1673 unknown function unknown function 1 48891 49127
AEJ92560.1 JN006062_p22 tail assembly chaperone phrog_5940 tail assembly chaperone tail 1 13176 13454
AEJ92672.1 JN006062_p41 hypothetical protein phrog_647 unknown function unknown function -1 34311 34775
AEJ92673.1 JN006062_p40 hypothetical protein phrog_3481 unknown function unknown function -1 34117 34308
AEJ92677.1 JN006062_p8 hypothetical protein phrog_4101 unknown function unknown function -1 1917 2156
AEJ92641.1 JN006062_p126 hypothetical protein phrog_3016 unknown function unknown function 1 68397 68531
AEJ92663.1 JN006062_p50 hypothetical protein phrog_2702 unknown function unknown function -1 36364 36579
AEJ92543.1 JN006062_p3 hypothetical protein phrog_2829 unknown function unknown function 1 446 604
AEJ92554.1 JN006062_p16 hypothetical protein phrog_442 head-tail adaptor connector 1 9792 10358
AEJ92547.1 JN006062_p7 hypothetical protein phrog_2142 unknown function unknown function 1 1511 1855
AEJ92622.1 JN006062_p105 hypothetical protein phrog_2757 unknown function unknown function 1 61296 61565
AEJ92649.1 JN006062_p137 hypothetical protein phrog_2883 unknown function unknown function -1 72400 72948
AEJ92637.1 JN006062_p122 hypothetical protein phrog_2823 unknown function unknown function 1 67745 67945
AEJ92555.1 JN006062_p17 hypothetical protein phrog_1531 head closure connector 1 10371 10706
AEJ92609.1 JN006062_p91 hypothetical protein phrog_2844 unknown function unknown function 1 54311 54433
AEJ92631.1 JN006062_p114 hypothetical protein phrog_1941 unknown function unknown function 1 65241 65483
AEJ92655.1 JN006062_p129 hypothetical protein phrog_2942 unknown function unknown function -1 69678 69932
AEJ92644.1 JN006062_p143 hypothetical protein phrog_5130 unknown function unknown function -1 74236 74427
AEJ92651.1 JN006062_p133 hypothetical protein phrog_4006 unknown function unknown function -1 71178 71696
AEJ92598.1 JN006062_p80 hypothetical protein phrog_1882 unknown function unknown function 1 49124 49774
AEJ92657.1 JN006062_p127 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 68910 69173
AEJ92548.1 JN006062_p10 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2509 5172
AEJ92624.1 JN006062_p107 hypothetical protein phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61934 62221
AEJ92552.1 JN006062_p14 major capsid protein phrog_10 major head protein head and packaging 1 8040 9533
AEJ92683.1 JN006062_p134 hypothetical protein phrog_8217 unknown function unknown function -1 71717 72028
AEJ92605.1 JN006062_p87 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 52214 52576
AEJ92583.1 JN006062_p65 hypothetical protein phrog_2147 unknown function unknown function 1 43221 43454
AEJ92674.1 JN006062_p39 Lsr2 phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 33683 34069
AEJ92575.1 JN006062_p38 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 33241 33486
AEJ92630.1 JN006062_p113 DnaQ-like protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 64459 65244
AEJ92608.1 JN006062_p90 hypothetical protein phrog_2495 unknown function unknown function 1 53970 54338
AEJ92565.1 JN006062_p27 minor tail protein phrog_346 minor tail protein tail 1 22397 24793
AEJ92646.1 JN006062_p140 hypothetical protein phrog_2772 unknown function unknown function -1 73519 73764
AEJ92580.1 JN006062_p61 hypothetical protein phrog_2463 unknown function unknown function 1 41817 41963
AEJ92678.1 JN006062_p58 hypothetical protein phrog_3071 unknown function unknown function 1 40741 40839
AEJ92628.1 JN006062_p111 hypothetical protein phrog_4826 unknown function unknown function 1 63548 63865
AEJ92599.1 JN006062_p81 hypothetical protein phrog_572 unknown function unknown function 1 49771 50103
AEJ92584.1 JN006062_p66 hypothetical protein phrog_2221 unknown function unknown function 1 43454 43615