| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JN006062 |
Definition |
Mycobacterium phage Rakim, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
PVOG |
Length |
75706 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
145 |
%GC |
62.85 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEJ92666.1 | JN006062_p47 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 35843 | 35971 |
| AEJ92667.1 | JN006062_p46 | hypothetical protein | phrog_6127 | unknown function | unknown function | -1 | 35733 | 35846 |
| AEJ92619.1 | JN006062_p102 | protease | phrog_94 | head maturation protease | head and packaging | 1 | 59964 | 60743 |
| AEJ92561.1 | JN006062_p23 | tapemeasure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13447 | 18180 |
| AEJ92581.1 | JN006062_p62 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 41960 | 42238 |
| AEJ92684.1 | JN006062_p135 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 72033 | 72143 |
| AEJ92618.1 | JN006062_p101 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59237 | 59848 |
| AEJ92542.1 | JN006062_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| AEJ92591.1 | JN006062_p73 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47029 | 47397 |
| AEJ92676.1 | JN006062_p9 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 2156 | 2464 |
| AEJ92638.1 | JN006062_p123 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 67954 | 68079 |
| AEJ92550.1 | JN006062_p12 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 5392 | 6948 |
| AEJ92563.1 | JN006062_p25 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19943 | 21538 |
| AEJ92600.1 | JN006062_p82 | DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50096 | 51358 |
| AEJ92658.1 | JN006062_p57 | hypothetical protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40084 | 40515 |
| AEJ92680.1 | JN006062_p100 | endonuclease VII | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 58852 | 59415 |
| AEJ92607.1 | JN006062_p89 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 52922 | 53863 |
| AEJ92592.1 | JN006062_p74 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 47394 | 47768 |
| AEJ92594.1 | JN006062_p76 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 47944 | 48177 |
| AEJ92685.1 | JN006062_p142 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 73976 | 74233 |
| AEJ92659.1 | JN006062_p56 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39216 | 39965 |
| AEJ92579.1 | JN006062_p60 | hypothetical protein | phrog_923 | unknown function | unknown function | 1 | 40970 | 41815 |
| AEJ92643.1 | JN006062_p145 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 74914 | 75135 |
| AEJ92576.1 | JN006062_p54 | integrase | phrog_1 | integrase | integration and excision | 1 | 37979 | 38860 |
| AEJ92587.1 | JN006062_p69 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45127 | 45537 |
| AEJ92647.1 | JN006062_p139 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73349 | 73522 |
| AEJ92582.1 | JN006062_p63 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 42782 | 43087 |
| AEJ92648.1 | JN006062_p138 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 72952 | 73344 |
| AEJ92629.1 | JN006062_p112 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 63855 | 64448 |
| AEJ92562.1 | JN006062_p24 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18210 | 19871 |
| AEJ92556.1 | JN006062_p18 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 10703 | 11083 |
| AEJ92585.1 | JN006062_p67 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 43836 | 44165 |
| AEJ92664.1 | JN006062_p49 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36135 | 36305 |
| AEJ92570.1 | JN006062_p33 | lysin A | phrog_317 | endolysin | lysis | 1 | 29747 | 31249 |
| AEJ92564.1 | JN006062_p26 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21559 | 22380 |
| AEJ92615.1 | JN006062_p97 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57498 | 57941 |
| AEJ92656.1 | JN006062_p128 | ParB-like nuclease domain | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69170 | 69559 |
| AEJ92544.1 | JN006062_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| AEJ92588.1 | JN006062_p70 | Erf | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45530 | 46252 |
| AEJ92675.1 | JN006062_p31 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29080 | 29256 |
| AEJ92541.1 | JN006062_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |
| AEJ92596.1 | JN006062_p78 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48584 | 48901 |
| AEJ92660.1 | JN006062_p53 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37426 | 37728 |
| AEJ92616.1 | JN006062_p98 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 57943 | 58278 |
| AEJ92567.1 | JN006062_p29 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27631 | 28575 |
| AEJ92661.1 | JN006062_p52 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 36744 | 37139 |
| AEJ92559.1 | JN006062_p21 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12583 | 13044 |
| AEJ92634.1 | JN006062_p117 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 66574 | 66747 |
| AEJ92558.1 | JN006062_p20 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 11492 | 12463 |
| AEJ92633.1 | JN006062_p116 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 66450 | 66587 |
| AEJ92612.1 | JN006062_p94 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 56610 | 56870 |
| AEJ92601.1 | JN006062_p83 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51355 | 51543 |
| AEJ92611.1 | JN006062_p93 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 55792 | 56613 |
| AEJ92620.1 | JN006062_p103 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 60745 | 60942 |
| AEJ92571.1 | JN006062_p34 | holin | phrog_526 | holin | lysis | 1 | 31253 | 31636 |
| AEJ92635.1 | JN006062_p120 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67136 | 67597 |
| AEJ92621.1 | JN006062_p104 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60939 | 61295 |
| AEJ92551.1 | JN006062_p13 | hypothetical protein | phrog_2753 | head maturation protease | head and packaging | 1 | 6951 | 7952 |
| AEJ92606.1 | JN006062_p88 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 52573 | 52767 |
| AEJ92577.1 | JN006062_p55 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 38999 | 39238 |
| AEJ92568.1 | JN006062_p30 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28655 | 29083 |
| AEJ92670.1 | JN006062_p43 | hypothetical protein | phrog_5831 | unknown function | unknown function | -1 | 35023 | 35205 |
| AEJ92642.1 | JN006062_p144 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74492 | 74839 |
| AEJ92654.1 | JN006062_p130 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70000 | 70368 |
| AEJ92610.1 | JN006062_p92 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54430 | 55755 |
| AEJ92603.1 | JN006062_p85 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 51775 | 51993 |
| AEJ92636.1 | JN006062_p121 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 67594 | 67761 |
| AEJ92679.1 | JN006062_p64 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43106 | 43213 |
| AEJ92586.1 | JN006062_p68 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44162 | 45130 |
| AEJ92625.1 | JN006062_p108 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62679 | 62903 |
| AEJ92665.1 | JN006062_p48 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35971 | 36138 |
| AEJ92640.1 | JN006062_p125 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68255 | 68386 |
| AEJ92593.1 | JN006062_p75 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 47768 | 47947 |
| AEJ92572.1 | JN006062_p35 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31629 | 31967 |
| AEJ92553.1 | JN006062_p15 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 9601 | 9792 |
| AEJ92617.1 | JN006062_p99 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58311 | 58811 |
| AEJ92569.1 | JN006062_p32 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29389 | 29673 |
| AEJ92557.1 | JN006062_p19 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 11061 | 11465 |
| AEJ92626.1 | JN006062_p109 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62900 | 63163 |
| AEJ92653.1 | JN006062_p131 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70365 | 70829 |
| AEJ92623.1 | JN006062_p106 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61570 | 61881 |
| AEJ92545.1 | JN006062_p5 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 813 | 1064 |
| AEJ92595.1 | JN006062_p77 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 48174 | 48587 |
| AEJ92645.1 | JN006062_p141 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 73761 | 73973 |
| AEJ92671.1 | JN006062_p42 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 34772 | 35026 |
| AEJ92602.1 | JN006062_p84 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51525 | 51800 |
| AEJ92650.1 | JN006062_p136 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72148 | 72384 |
| AEJ92662.1 | JN006062_p51 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36598 | 36744 |
| AEJ92627.1 | JN006062_p110 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 63174 | 63548 |
| AEJ92681.1 | JN006062_p118 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 66740 | 66952 |
| AEJ92613.1 | JN006062_p95 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 56887 | 57045 |
| AEJ92632.1 | JN006062_p115 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 65491 | 66453 |
| AEJ92682.1 | JN006062_p119 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 66933 | 67187 |
| AEJ92549.1 | JN006062_p11 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 5184 | 5405 |
| AEJ92578.1 | JN006062_p59 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 40836 | 40973 |
| AEJ92639.1 | JN006062_p124 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68076 | 68255 |
| AEJ92574.1 | JN006062_p37 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32818 | 33234 |
| AEJ92589.1 | JN006062_p71 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 46245 | 46556 |
| AEJ92604.1 | JN006062_p86 | hypothetical protein | phrog_1503 | unknown function | unknown function | 1 | 51990 | 52217 |
| AEJ92590.1 | JN006062_p72 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46556 | 47029 |
| AEJ92573.1 | JN006062_p36 | lysin B | phrog_102 | endolysin | lysis | 1 | 31964 | 32821 |
| AEJ92546.1 | JN006062_p6 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| AEJ92614.1 | JN006062_p96 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57042 | 57494 |
| AEJ92668.1 | JN006062_p45 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35411 | 35740 |
| AEJ92669.1 | JN006062_p44 | hypothetical protein | phrog_3447 | unknown function | unknown function | -1 | 35202 | 35414 |
| AEJ92652.1 | JN006062_p132 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 70844 | 71173 |
| AEJ92566.1 | JN006062_p28 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24790 | 27630 |
| AEJ92597.1 | JN006062_p79 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 48891 | 49127 |
| AEJ92560.1 | JN006062_p22 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 13176 | 13454 |
| AEJ92672.1 | JN006062_p41 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34311 | 34775 |
| AEJ92673.1 | JN006062_p40 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34117 | 34308 |
| AEJ92677.1 | JN006062_p8 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1917 | 2156 |
| AEJ92641.1 | JN006062_p126 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68397 | 68531 |
| AEJ92663.1 | JN006062_p50 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36364 | 36579 |
| AEJ92543.1 | JN006062_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| AEJ92554.1 | JN006062_p16 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 9792 | 10358 |
| AEJ92547.1 | JN006062_p7 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 1511 | 1855 |
| AEJ92622.1 | JN006062_p105 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61296 | 61565 |
| AEJ92649.1 | JN006062_p137 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72400 | 72948 |
| AEJ92637.1 | JN006062_p122 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 67745 | 67945 |
| AEJ92555.1 | JN006062_p17 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 10371 | 10706 |
| AEJ92609.1 | JN006062_p91 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54311 | 54433 |
| AEJ92631.1 | JN006062_p114 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65241 | 65483 |
| AEJ92655.1 | JN006062_p129 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 69678 | 69932 |
| AEJ92644.1 | JN006062_p143 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 74236 | 74427 |
| AEJ92651.1 | JN006062_p133 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 71178 | 71696 |
| AEJ92598.1 | JN006062_p80 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49124 | 49774 |
| AEJ92657.1 | JN006062_p127 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 68910 | 69173 |
| AEJ92548.1 | JN006062_p10 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2509 | 5172 |
| AEJ92624.1 | JN006062_p107 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61934 | 62221 |
| AEJ92552.1 | JN006062_p14 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 8040 | 9533 |
| AEJ92683.1 | JN006062_p134 | hypothetical protein | phrog_8217 | unknown function | unknown function | -1 | 71717 | 72028 |
| AEJ92605.1 | JN006062_p87 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52214 | 52576 |
| AEJ92583.1 | JN006062_p65 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43221 | 43454 |
| AEJ92674.1 | JN006062_p39 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33683 | 34069 |
| AEJ92575.1 | JN006062_p38 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33241 | 33486 |
| AEJ92630.1 | JN006062_p113 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 64459 | 65244 |
| AEJ92608.1 | JN006062_p90 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 53970 | 54338 |
| AEJ92565.1 | JN006062_p27 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22397 | 24793 |
| AEJ92646.1 | JN006062_p140 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73519 | 73764 |
| AEJ92580.1 | JN006062_p61 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 41817 | 41963 |
| AEJ92678.1 | JN006062_p58 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 40741 | 40839 |
| AEJ92628.1 | JN006062_p111 | hypothetical protein | phrog_4826 | unknown function | unknown function | 1 | 63548 | 63865 |
| AEJ92599.1 | JN006062_p81 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 49771 | 50103 |
| AEJ92584.1 | JN006062_p66 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43454 | 43615 |