| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JN020140 |
Definition |
Mycobacterium virus MrGordo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
PVOG |
Length |
50988 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
63.75 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEJ92951.1 | JN020140_p66 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 42450 | 42620 |
| AEJ92912.1 | JN020140_p24 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16064 | 18535 |
| AEJ92964.1 | JN020140_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37932 | 38105 |
| AEJ92938.1 | JN020140_p79 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 46579 | 46848 |
| AEJ92920.1 | JN020140_p32 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25662 | 27152 |
| AEJ92890.1 | JN020140_p2 | hypothetical protein | phrog_22409 | unknown function | unknown function | 1 | 1035 | 1211 |
| AEJ92941.1 | JN020140_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45314 | 45826 |
| AEJ92919.1 | JN020140_p31 | structural protein | phrog_346 | minor tail protein | tail | 1 | 23816 | 25669 |
| AEJ92923.1 | JN020140_p35 | structural protein | phrog_754 | minor tail protein | tail | 1 | 27763 | 28566 |
| AEJ92933.1 | JN020140_p84 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 47573 | 47701 |
| AEJ92904.1 | JN020140_p16 | structural protein | phrog_1857 | head-tail connector protein | connector | 1 | 12395 | 12631 |
| AEJ92971.1 | JN020140_p45 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34053 | 34283 |
| AEJ92917.1 | JN020140_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23100 | 23447 |
| AEJ92958.1 | JN020140_p59 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39790 | 40260 |
| AEJ92970.1 | JN020140_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34314 | 34805 |
| AEJ92915.1 | JN020140_p27 | structural protein | phrog_110 | minor tail protein | tail | 1 | 20817 | 22619 |
| AEJ92907.1 | JN020140_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13442 | 13837 |
| AEJ92955.1 | JN020140_p62 | HNH endonuclease | phrog_722 | unknown function | unknown function | -1 | 40590 | 40946 |
| AEJ92900.1 | JN020140_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8414 | 9856 |
| AEJ92935.1 | JN020140_p82 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47221 | 47409 |
| AEJ92959.1 | JN020140_p58 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39659 | 39793 |
| AEJ92895.1 | JN020140_p7 | structural protein | phrog_1718 | tail protein | tail | 1 | 3814 | 4074 |
| AEJ92977.1 | JN020140_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31022 | 31201 |
| AEJ92921.1 | JN020140_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27242 | 27565 |
| AEJ92929.1 | JN020140_p89 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 49306 | 49461 |
| AEJ92896.1 | JN020140_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4082 | 4339 |
| AEJ92952.1 | JN020140_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41635 | 42456 |
| AEJ92966.1 | JN020140_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36072 | 36212 |
| AEJ92946.1 | JN020140_p71 | hypothetical protein | phrog_5961 | unknown function | unknown function | -1 | 43385 | 43543 |
| AEJ92916.1 | JN020140_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22657 | 23103 |
| AEJ92905.1 | JN020140_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12631 | 13080 |
| AEJ92950.1 | JN020140_p67 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 42620 | 42793 |
| AEJ92957.1 | JN020140_p60 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40247 | 40333 |
| AEJ92973.1 | JN020140_p43 | hypothetical protein | phrog_4371 | unknown function | unknown function | -1 | 31915 | 32193 |
| AEJ92909.1 | JN020140_p21 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 14296 | 15144 |
| AEJ92899.1 | JN020140_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6729 | 8417 |
| AEJ92918.1 | JN020140_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23444 | 23791 |
| AEJ92936.1 | JN020140_p81 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47024 | 47224 |
| AEJ92910.1 | JN020140_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15253 | 15630 |
| AEJ92928.1 | JN020140_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49625 | 49834 |
| AEJ92963.1 | JN020140_p53 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38102 | 38500 |
| AEJ92948.1 | JN020140_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42909 | 43202 |
| AEJ92960.1 | JN020140_p57 | hypothetical protein | phrog_13342 | unknown function | unknown function | -1 | 39525 | 39662 |
| AEJ92956.1 | JN020140_p61 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 40330 | 40593 |
| AEJ92892.1 | JN020140_p4 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1713 | 2015 |
| AEJ92962.1 | JN020140_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38497 | 39144 |
| AEJ92901.1 | JN020140_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9853 | 10734 |
| AEJ92902.1 | JN020140_p14 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10793 | 11305 |
| AEJ92953.1 | JN020140_p64 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41360 | 41635 |
| AEJ92947.1 | JN020140_p70 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43206 | 43388 |
| AEJ92908.1 | JN020140_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13841 | 14287 |
| AEJ92903.1 | JN020140_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11315 | 12316 |
| AEJ92968.1 | JN020140_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35139 | 35297 |
| AEJ92926.1 | JN020140_p92 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 50400 | 50603 |
| AEJ92911.1 | JN020140_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15253 | 16052 |
| AEJ92976.1 | JN020140_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31189 | 31284 |
| AEJ92980.1 | JN020140_p85 | hypothetical protein | phrog_18314 | unknown function | unknown function | -1 | 47698 | 47880 |
| AEJ92944.1 | JN020140_p73 | hypothetical protein | phrog_6489 | unknown function | unknown function | -1 | 44417 | 44566 |
| AEJ92894.1 | JN020140_p6 | structural protein | phrog_553 | minor tail protein | tail | 1 | 3113 | 3805 |
| AEJ92913.1 | JN020140_p25 | structural protein | phrog_106 | minor tail protein | tail | 1 | 18559 | 20616 |
| AEJ92937.1 | JN020140_p80 | hypothetical protein | phrog_6510 | unknown function | unknown function | -1 | 46845 | 47027 |
| AEJ92934.1 | JN020140_p83 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47409 | 47576 |
| AEJ92967.1 | JN020140_p49 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35294 | 36079 |
| AEJ92974.1 | JN020140_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 31550 | 31915 |
| AEJ92961.1 | JN020140_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39361 | 39525 |
| AEJ92925.1 | JN020140_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29130 | 30632 |
| AEJ92932.1 | JN020140_p86 | hypothetical protein | phrog_2974 | unknown function | unknown function | -1 | 47877 | 48098 |
| AEJ92965.1 | JN020140_p51 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36217 | 37935 |
| AEJ92897.1 | JN020140_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4339 | 5751 |
| AEJ92898.1 | JN020140_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5741 | 6709 |
| AEJ92943.1 | JN020140_p74 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 44566 | 44880 |
| AEJ92914.1 | JN020140_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20635 | 20817 |
| AEJ92889.1 | JN020140_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 570 | 905 |
| AEJ92927.1 | JN020140_p91 | hypothetical protein | phrog_5015 | unknown function | unknown function | -1 | 49841 | 50305 |
| AEJ92978.1 | JN020140_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 30753 | 31025 |
| AEJ92930.1 | JN020140_p88 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 48553 | 49233 |
| AEJ92922.1 | JN020140_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27575 | 27766 |
| AEJ92891.1 | JN020140_p3 | tail protein | phrog_226 | minor tail protein | tail | 1 | 1225 | 1665 |
| AEJ92949.1 | JN020140_p68 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42790 | 42912 |
| AEJ92931.1 | JN020140_p87 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48124 | 48276 |
| AEJ92939.1 | JN020140_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46411 | 46545 |
| AEJ92942.1 | JN020140_p75 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 44877 | 45272 |
| AEJ92979.1 | JN020140_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38972 | 39382 |
| AEJ92969.1 | JN020140_p47 | hypothetical protein | phrog_2831 | unknown function | unknown function | -1 | 34802 | 35149 |
| AEJ92906.1 | JN020140_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13080 | 13442 |
| AEJ92893.1 | JN020140_p5 | structural protein | phrog_1197 | tail protein | tail | 1 | 2032 | 3102 |
| AEJ92940.1 | JN020140_p77 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46088 | 46387 |
| AEJ92954.1 | JN020140_p63 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 40939 | 41253 |
| AEJ92975.1 | JN020140_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31281 | 31553 |
| AEJ92924.1 | JN020140_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28687 | 28983 |
| AEJ92945.1 | JN020140_p72 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43573 | 44403 |
| AEJ92972.1 | JN020140_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32190 | 34016 |