| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JN020143 |
Definition |
Mycobacterium phage ShiLan, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; Mycobacterium virus Shilan. |
DB of origin |
PVOG |
Length |
59794 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
107 |
%GC |
61.44 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEJ93196.1 | JN020143_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2240 | 3610 |
| AEJ93282.1 | JN020143_p99 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 55748 | 56029 |
| AEJ93211.1 | JN020143_p18 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 17405 | 19957 |
| AEJ93256.1 | JN020143_p72 | hypothetical protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 47658 | 48506 |
| AEJ93205.1 | JN020143_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8444 | 9088 |
| AEJ93299.1 | JN020143_p66 | hypothetical protein | phrog_7789 | unknown function | unknown function | 1 | 45743 | 45832 |
| AEJ93240.1 | JN020143_p55 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38649 | 38996 |
| AEJ93268.1 | JN020143_p85 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51984 | 52355 |
| AEJ93293.1 | JN020143_p42 | hypothetical protein | phrog_506 | transposase | integration and excision | -1 | 31472 | 32809 |
| AEJ93199.1 | JN020143_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5048 | 5869 |
| AEJ93249.1 | JN020143_p64 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42432 | 42788 |
| AEJ93214.1 | JN020143_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23069 | 23410 |
| AEJ93277.1 | JN020143_p94 | GIY-YIG endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 53825 | 54364 |
| AEJ93206.1 | JN020143_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8444 | 9473 |
| AEJ93286.1 | JN020143_p103 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 56871 | 57032 |
| AEJ93194.1 | JN020143_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| AEJ93265.1 | JN020143_p82 | hypothetical protein | phrog_5892 | unknown function | unknown function | 1 | 51252 | 51410 |
| AEJ93224.1 | JN020143_p32 | holin | phrog_443 | holin | lysis | 1 | 28750 | 28983 |
| AEJ93270.1 | JN020143_p87 | hypothetical protein | phrog_6727 | unknown function | unknown function | 1 | 52560 | 52748 |
| AEJ93259.1 | JN020143_p75 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 49014 | 49925 |
| AEJ93296.1 | JN020143_p39 | hypothetical protein | phrog_7480 | unknown function | unknown function | -1 | 31017 | 31223 |
| AEJ93233.1 | JN020143_p48 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36376 | 36666 |
| AEJ93246.1 | JN020143_p61 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40767 | 41000 |
| AEJ93247.1 | JN020143_p62 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 40997 | 41461 |
| AEJ93280.1 | JN020143_p97 | hypothetical protein | phrog_13974 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 55318 | 55620 |
| AEJ93207.1 | JN020143_p14 | tapemeasure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9491 | 13018 |
| AEJ93241.1 | JN020143_p56 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 38996 | 39490 |
| AEJ93244.1 | JN020143_p59 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40250 | 40615 |
| AEJ93261.1 | JN020143_p77 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 50274 | 50498 |
| AEJ93272.1 | JN020143_p89 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52933 | 53112 |
| AEJ93208.1 | JN020143_p15 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 13019 | 14728 |
| AEJ93243.1 | JN020143_p58 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39969 | 40253 |
| AEJ93254.1 | JN020143_p70 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 46343 | 47512 |
| AEJ93291.1 | JN020143_p46 | hypothetical protein | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 35343 | 35945 |
| AEJ93253.1 | JN020143_p69 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 46200 | 46346 |
| AEJ93276.1 | JN020143_p93 | hypothetical protein | phrog_6194 | unknown function | unknown function | 1 | 53725 | 53802 |
| AEJ93229.1 | JN020143_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30717 | 30809 |
| AEJ93222.1 | JN020143_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26544 | 27740 |
| AEJ93212.1 | JN020143_p19 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19954 | 21843 |
| AEJ93203.1 | JN020143_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7096 | 7500 |
| AEJ93269.1 | JN020143_p86 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 52352 | 52567 |
| AEJ93225.1 | JN020143_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28980 | 29354 |
| AEJ93287.1 | JN020143_p104 | polypeptide N-acetylgalactosaminyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57059 | 58495 |
| AEJ93242.1 | JN020143_p57 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39487 | 39972 |
| AEJ93263.1 | JN020143_p80 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 50778 | 50978 |
| AEJ93226.1 | JN020143_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29351 | 29611 |
| AEJ93294.1 | JN020143_p41 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31342 | 31464 |
| AEJ93264.1 | JN020143_p81 | hypothetical protein | phrog_21293 | unknown function | unknown function | 1 | 50983 | 51255 |
| AEJ93232.1 | JN020143_p47 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 36082 | 36315 |
| AEJ93209.1 | JN020143_p16 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 14812 | 16521 |
| AEJ93248.1 | JN020143_p63 | hypothetical protein | phrog_1366 | unknown function | unknown function | 1 | 41458 | 42435 |
| AEJ93267.1 | JN020143_p84 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 51814 | 51987 |
| AEJ93215.1 | JN020143_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23445 | 23807 |
| AEJ93201.1 | JN020143_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6444 | 6773 |
| AEJ93237.1 | JN020143_p52 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37462 | 37650 |
| AEJ93252.1 | JN020143_p68 | hypothetical protein | phrog_6573 | unknown function | unknown function | 1 | 46096 | 46200 |
| AEJ93298.1 | JN020143_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25285 | 25482 |
| AEJ93279.1 | JN020143_p96 | hypothetical protein | phrog_15959 | unknown function | unknown function | 1 | 55073 | 55321 |
| AEJ93204.1 | JN020143_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7537 | 8418 |
| AEJ93216.1 | JN020143_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23820 | 24458 |
| AEJ93273.1 | JN020143_p90 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 53117 | 53254 |
| AEJ93195.1 | JN020143_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 572 | 2209 |
| AEJ93223.1 | JN020143_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27740 | 28741 |
| AEJ93255.1 | JN020143_p71 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 47509 | 47661 |
| AEJ93258.1 | JN020143_p74 | hypothetical protein | phrog_5500 | unknown function | unknown function | 1 | 48679 | 49017 |
| AEJ93235.1 | JN020143_p50 | hypothetical protein | phrog_13720 | unknown function | unknown function | 1 | 36990 | 37184 |
| AEJ93285.1 | JN020143_p102 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 56636 | 56878 |
| AEJ93227.1 | JN020143_p35 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29598 | 30419 |
| AEJ93251.1 | JN020143_p67 | DNA methylase | phrog_3008 | DNA methyltransferase | other | 1 | 45807 | 46058 |
| AEJ93221.1 | JN020143_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26272 | 26547 |
| AEJ93236.1 | JN020143_p51 | hypothetical protein | phrog_12427 | unknown function | unknown function | 1 | 37181 | 37465 |
| AEJ93228.1 | JN020143_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30503 | 30724 |
| AEJ93200.1 | JN020143_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5878 | 6447 |
| AEJ93238.1 | JN020143_p53 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 37647 | 38294 |
| AEJ93271.1 | JN020143_p88 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 52745 | 52936 |
| AEJ93220.1 | JN020143_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26065 | 26205 |
| AEJ93202.1 | JN020143_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6780 | 7106 |
| AEJ93289.1 | JN020143_p106 | N-acetylglucosaminyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 58701 | 59324 |
| AEJ93197.1 | JN020143_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3597 | 4352 |
| AEJ93300.1 | JN020143_p78 | hypothetical protein | phrog_9299 | unknown function | unknown function | 1 | 50495 | 50578 |
| AEJ93278.1 | JN020143_p95 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 54361 | 55032 |
| AEJ93230.1 | JN020143_p43 | hypothetical protein | phrog_25457 | unknown function | unknown function | 1 | 32866 | 33018 |
| AEJ93218.1 | JN020143_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25631 | 25915 |
| AEJ93290.1 | JN020143_p107 | HNH endonuclease domain protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59324 | 59650 |
| AEJ93262.1 | JN020143_p79 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 50578 | 50781 |
| AEJ93292.1 | JN020143_p45 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34633 | 35079 |
| AEJ93198.1 | JN020143_p5 | scaffold protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4436 | 5029 |
| AEJ93297.1 | JN020143_p38 | hypothetical protein | phrog_10622 | unknown function | unknown function | -1 | 30878 | 31024 |
| AEJ93260.1 | JN020143_p76 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 49922 | 50281 |
| AEJ93257.1 | JN020143_p73 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 48503 | 48679 |
| AEJ93275.1 | JN020143_p92 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 53432 | 53728 |
| AEJ93288.1 | JN020143_p105 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 58498 | 58704 |
| AEJ93231.1 | JN020143_p44 | integrase | phrog_1 | integrase | integration and excision | 1 | 33263 | 34552 |
| AEJ93213.1 | JN020143_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21843 | 23045 |
| AEJ93239.1 | JN020143_p54 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 38374 | 38652 |
| AEJ93274.1 | JN020143_p91 | hypothetical protein | phrog_12331 | unknown function | unknown function | 1 | 53251 | 53379 |
| AEJ93219.1 | JN020143_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25922 | 26068 |
| AEJ93281.1 | JN020143_p98 | hypothetical protein | phrog_14508 | unknown function | unknown function | 1 | 55617 | 55739 |
| AEJ93217.1 | JN020143_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24455 | 25279 |
| AEJ93284.1 | JN020143_p101 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 56226 | 56639 |
| AEJ93283.1 | JN020143_p100 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 56029 | 56229 |
| AEJ93234.1 | JN020143_p49 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36752 | 36949 |
| AEJ93250.1 | JN020143_p65 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 42785 | 45667 |
| AEJ93295.1 | JN020143_p40 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 31220 | 31342 |
| AEJ93210.1 | JN020143_p17 | minor tail subunit | phrog_732 | minor tail protein | tail | 1 | 16563 | 17408 |
| AEJ93266.1 | JN020143_p83 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 51456 | 51827 |
| AEJ93245.1 | JN020143_p60 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40615 | 40767 |