Genomic map of Mycobacterium phage ShiLan (JN020143)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JN020143
Definition
Mycobacterium phage ShiLan, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; Mycobacterium virus Shilan.
DB of origin
PVOG
Length
59794
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
107
%GC
61.44
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEJ93196.1 JN020143_p3 portal protein phrog_104 portal protein head and packaging 1 2240 3610
AEJ93282.1 JN020143_p99 hypothetical protein phrog_419 unknown function unknown function 1 55748 56029
AEJ93211.1 JN020143_p18 minor tail subunit phrog_346 minor tail protein tail 1 17405 19957
AEJ93256.1 JN020143_p72 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 47658 48506
AEJ93205.1 JN020143_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8444 9088
AEJ93299.1 JN020143_p66 hypothetical protein phrog_7789 unknown function unknown function 1 45743 45832
AEJ93240.1 JN020143_p55 hypothetical protein phrog_658 unknown function unknown function 1 38649 38996
AEJ93268.1 JN020143_p85 hypothetical protein phrog_647 unknown function unknown function 1 51984 52355
AEJ93293.1 JN020143_p42 hypothetical protein phrog_506 transposase integration and excision -1 31472 32809
AEJ93199.1 JN020143_p6 major capsid protein phrog_267 major head protein head and packaging 1 5048 5869
AEJ93249.1 JN020143_p64 HNH endonuclease domain protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42432 42788
AEJ93214.1 JN020143_p21 hypothetical protein phrog_240 head protein head and packaging 1 23069 23410
AEJ93277.1 JN020143_p94 GIY-YIG endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 53825 54364
AEJ93206.1 JN020143_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8444 9473
AEJ93286.1 JN020143_p103 hypothetical protein phrog_2057 unknown function unknown function 1 56871 57032
AEJ93194.1 JN020143_p1 terminase small subunit phrog_226 minor tail protein tail 1 109 564
AEJ93265.1 JN020143_p82 hypothetical protein phrog_5892 unknown function unknown function 1 51252 51410
AEJ93224.1 JN020143_p32 holin phrog_443 holin lysis 1 28750 28983
AEJ93270.1 JN020143_p87 hypothetical protein phrog_6727 unknown function unknown function 1 52560 52748
AEJ93259.1 JN020143_p75 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 49014 49925
AEJ93296.1 JN020143_p39 hypothetical protein phrog_7480 unknown function unknown function -1 31017 31223
AEJ93233.1 JN020143_p48 hypothetical protein phrog_2025 unknown function unknown function 1 36376 36666
AEJ93246.1 JN020143_p61 hypothetical protein phrog_1834 unknown function unknown function 1 40767 41000
AEJ93247.1 JN020143_p62 hypothetical protein phrog_5168 unknown function unknown function 1 40997 41461
AEJ93280.1 JN020143_p97 hypothetical protein phrog_13974 membrane protein moron, auxiliary metabolic gene and host takeover 1 55318 55620
AEJ93207.1 JN020143_p14 tapemeasure protein phrog_1942 tail length tape measure protein tail 1 9491 13018
AEJ93241.1 JN020143_p56 WhiB phrog_1333 unknown function unknown function 1 38996 39490
AEJ93244.1 JN020143_p59 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 40250 40615
AEJ93261.1 JN020143_p77 hypothetical protein phrog_2080 unknown function unknown function 1 50274 50498
AEJ93272.1 JN020143_p89 hypothetical protein phrog_1091 unknown function unknown function 1 52933 53112
AEJ93208.1 JN020143_p15 minor tail subunit phrog_106 minor tail protein tail 1 13019 14728
AEJ93243.1 JN020143_p58 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 39969 40253
AEJ93254.1 JN020143_p70 DNA methylase phrog_116 DNA methyltransferase other 1 46343 47512
AEJ93291.1 JN020143_p46 hypothetical protein phrog_2838 transcriptional repressor transcription regulation -1 35343 35945
AEJ93253.1 JN020143_p69 hypothetical protein phrog_2704 unknown function unknown function 1 46200 46346
AEJ93276.1 JN020143_p93 hypothetical protein phrog_6194 unknown function unknown function 1 53725 53802
AEJ93229.1 JN020143_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30717 30809
AEJ93222.1 JN020143_p30 lysin A phrog_700 endolysin lysis 1 26544 27740
AEJ93212.1 JN020143_p19 D-Ala-D-Ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 19954 21843
AEJ93203.1 JN020143_p10 hypothetical protein phrog_813 head-tail adaptor connector 1 7096 7500
AEJ93269.1 JN020143_p86 hypothetical protein phrog_2939 unknown function unknown function 1 52352 52567
AEJ93225.1 JN020143_p33 hypothetical protein phrog_404 minor tail protein tail 1 28980 29354
AEJ93287.1 JN020143_p104 polypeptide N-acetylgalactosaminyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 57059 58495
AEJ93242.1 JN020143_p57 hypothetical protein phrog_2096 unknown function unknown function 1 39487 39972
AEJ93263.1 JN020143_p80 hypothetical protein phrog_1943 unknown function unknown function 1 50778 50978
AEJ93226.1 JN020143_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29351 29611
AEJ93294.1 JN020143_p41 hypothetical protein phrog_2437 unknown function unknown function -1 31342 31464
AEJ93264.1 JN020143_p81 hypothetical protein phrog_21293 unknown function unknown function 1 50983 51255
AEJ93232.1 JN020143_p47 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 36082 36315
AEJ93209.1 JN020143_p16 minor tail subunit phrog_110 minor tail protein tail 1 14812 16521
AEJ93248.1 JN020143_p63 hypothetical protein phrog_1366 unknown function unknown function 1 41458 42435
AEJ93267.1 JN020143_p84 hypothetical protein phrog_7842 unknown function unknown function 1 51814 51987
AEJ93215.1 JN020143_p22 hypothetical protein singleton unknown function unknown function 1 23445 23807
AEJ93201.1 JN020143_p8 hypothetical protein phrog_763 head-tail adaptor connector 1 6444 6773
AEJ93237.1 JN020143_p52 hypothetical protein phrog_1816 unknown function unknown function 1 37462 37650
AEJ93252.1 JN020143_p68 hypothetical protein phrog_6573 unknown function unknown function 1 46096 46200
AEJ93298.1 JN020143_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25285 25482
AEJ93279.1 JN020143_p96 hypothetical protein phrog_15959 unknown function unknown function 1 55073 55321
AEJ93204.1 JN020143_p11 major tail subunit phrog_476 major tail protein tail 1 7537 8418
AEJ93216.1 JN020143_p23 hypothetical protein phrog_2012 minor tail protein tail 1 23820 24458
AEJ93273.1 JN020143_p90 hypothetical protein phrog_1545 unknown function unknown function 1 53117 53254
AEJ93195.1 JN020143_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 572 2209
AEJ93223.1 JN020143_p31 lysin B phrog_102 endolysin lysis 1 27740 28741
AEJ93255.1 JN020143_p71 hypothetical protein phrog_2070 unknown function unknown function 1 47509 47661
AEJ93258.1 JN020143_p74 hypothetical protein phrog_5500 unknown function unknown function 1 48679 49017
AEJ93235.1 JN020143_p50 hypothetical protein phrog_13720 unknown function unknown function 1 36990 37184
AEJ93285.1 JN020143_p102 hypothetical protein phrog_1385 unknown function unknown function 1 56636 56878
AEJ93227.1 JN020143_p35 DnaQ-like protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29598 30419
AEJ93251.1 JN020143_p67 DNA methylase phrog_3008 DNA methyltransferase other 1 45807 46058
AEJ93221.1 JN020143_p29 hypothetical protein phrog_747 unknown function unknown function 1 26272 26547
AEJ93236.1 JN020143_p51 hypothetical protein phrog_12427 unknown function unknown function 1 37181 37465
AEJ93228.1 JN020143_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30503 30724
AEJ93200.1 JN020143_p7 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 5878 6447
AEJ93238.1 JN020143_p53 hypothetical protein phrog_1797 unknown function unknown function 1 37647 38294
AEJ93271.1 JN020143_p88 hypothetical protein phrog_1901 unknown function unknown function 1 52745 52936
AEJ93220.1 JN020143_p28 hypothetical protein phrog_1172 unknown function unknown function 1 26065 26205
AEJ93202.1 JN020143_p9 hypothetical protein phrog_1929 head-tail connector protein connector 1 6780 7106
AEJ93289.1 JN020143_p106 N-acetylglucosaminyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 58701 59324
AEJ93197.1 JN020143_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3597 4352
AEJ93300.1 JN020143_p78 hypothetical protein phrog_9299 unknown function unknown function 1 50495 50578
AEJ93278.1 JN020143_p95 hypothetical protein phrog_1467 unknown function unknown function 1 54361 55032
AEJ93230.1 JN020143_p43 hypothetical protein phrog_25457 unknown function unknown function 1 32866 33018
AEJ93218.1 JN020143_p26 hypothetical protein phrog_411 unknown function unknown function 1 25631 25915
AEJ93290.1 JN020143_p107 HNH endonuclease domain protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 59324 59650
AEJ93262.1 JN020143_p79 hypothetical protein phrog_2730 unknown function unknown function 1 50578 50781
AEJ93292.1 JN020143_p45 hypothetical protein phrog_1948 unknown function unknown function -1 34633 35079
AEJ93198.1 JN020143_p5 scaffold protein phrog_2592 head scaffolding protein head and packaging 1 4436 5029
AEJ93297.1 JN020143_p38 hypothetical protein phrog_10622 unknown function unknown function -1 30878 31024
AEJ93260.1 JN020143_p76 hypothetical protein phrog_4296 unknown function unknown function 1 49922 50281
AEJ93257.1 JN020143_p73 hypothetical protein phrog_1311 unknown function unknown function 1 48503 48679
AEJ93275.1 JN020143_p92 hypothetical protein phrog_2278 unknown function unknown function 1 53432 53728
AEJ93288.1 JN020143_p105 hypothetical protein phrog_1693 unknown function unknown function 1 58498 58704
AEJ93231.1 JN020143_p44 integrase phrog_1 integrase integration and excision 1 33263 34552
AEJ93213.1 JN020143_p20 hypothetical protein phrog_2106 minor tail protein tail 1 21843 23045
AEJ93239.1 JN020143_p54 hypothetical protein phrog_1849 unknown function unknown function 1 38374 38652
AEJ93274.1 JN020143_p91 hypothetical protein phrog_12331 unknown function unknown function 1 53251 53379
AEJ93219.1 JN020143_p27 hypothetical protein phrog_932 unknown function unknown function 1 25922 26068
AEJ93281.1 JN020143_p98 hypothetical protein phrog_14508 unknown function unknown function 1 55617 55739
AEJ93217.1 JN020143_p24 hypothetical protein phrog_754 minor tail protein tail 1 24455 25279
AEJ93284.1 JN020143_p101 hypothetical protein phrog_1186 unknown function unknown function 1 56226 56639
AEJ93283.1 JN020143_p100 hypothetical protein phrog_1694 unknown function unknown function 1 56029 56229
AEJ93234.1 JN020143_p49 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 36752 36949
AEJ93250.1 JN020143_p65 DNA methylase phrog_67 DNA methyltransferase other 1 42785 45667
AEJ93295.1 JN020143_p40 hypothetical protein phrog_3693 unknown function unknown function -1 31220 31342
AEJ93210.1 JN020143_p17 minor tail subunit phrog_732 minor tail protein tail 1 16563 17408
AEJ93266.1 JN020143_p83 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 51456 51827
AEJ93245.1 JN020143_p60 hypothetical protein phrog_2078 unknown function unknown function 1 40615 40767