Genomic map of Mycobacterium virus Benedict (JN083852)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JN083852
Definition
Mycobacterium virus Benedict, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
PVOG
Length
51083
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
90
%GC
59.79
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEJ93405.1 JN083852_p9 portal protein phrog_104 portal protein head and packaging 1 7766 9199
AEJ93430.1 JN083852_p86 hypothetical protein phrog_6340 unknown function unknown function -1 48553 48963
AEJ93403.1 JN083852_p7 lysin B phrog_102 endolysin lysis 1 5182 5991
AEJ93410.1 JN083852_p14 hypothetical protein phrog_2348 unknown function unknown function 1 12011 12154
AEJ93451.1 JN083852_p65 hypothetical protein phrog_25146 unknown function unknown function -1 40790 40912
AEJ93467.1 JN083852_p49 hypothetical protein phrog_5897 unknown function unknown function -1 34939 35040
AEJ93429.1 JN083852_p87 hypothetical protein phrog_1445 unknown function unknown function -1 48995 49072
AEJ93456.1 JN083852_p60 hypothetical protein phrog_397 unknown function unknown function -1 39267 39533
AEJ93401.1 JN083852_p5 structural protein phrog_356 minor tail protein tail 1 3409 4050
AEJ93419.1 JN083852_p23 minor tail subunit phrog_110 minor tail protein tail 1 18978 20777
AEJ93427.1 JN083852_p89 hypothetical protein phrog_9783 unknown function unknown function -1 49303 49389
AEJ93431.1 JN083852_p85 hypothetical protein phrog_6093 unknown function unknown function -1 48392 48550
AEJ93437.1 JN083852_p79 hypothetical protein phrog_6649 unknown function unknown function -1 45844 46050
AEJ93485.1 JN083852_p30 integrase phrog_95 integrase integration and excision -1 23936 25417
AEJ93425.1 JN083852_p31 hypothetical protein phrog_733 excisionase integration and excision 1 25653 26072
AEJ93435.1 JN083852_p81 hypothetical protein phrog_2124 unknown function unknown function -1 46422 46562
AEJ93472.1 JN083852_p44 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 31751 32275
AEJ93432.1 JN083852_p84 hypothetical protein phrog_3906 unknown function unknown function -1 47470 48303
AEJ93482.1 JN083852_p34 hypothetical protein phrog_980 unknown function unknown function -1 26814 27023
AEJ93400.1 JN083852_p4 hypothetical protein phrog_1197 tail protein tail 1 2467 3405
AEJ93481.1 JN083852_p35 hypothetical protein phrog_383 unknown function unknown function -1 27080 27526
AEJ93477.1 JN083852_p39 hypothetical protein singleton unknown function unknown function -1 30162 30239
AEJ93453.1 JN083852_p63 hypothetical protein phrog_1498 unknown function unknown function -1 40219 40407
AEJ93480.1 JN083852_p36 hypothetical protein phrog_5282 unknown function unknown function -1 27516 27800
AEJ93466.1 JN083852_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35040 35675
AEJ93446.1 JN083852_p70 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42467 43282
AEJ93478.1 JN083852_p38 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28289 30154
AEJ93462.1 JN083852_p54 hypothetical protein phrog_5242 unknown function unknown function -1 37310 37579
AEJ93448.1 JN083852_p68 hypothetical protein phrog_520 unknown function unknown function -1 41932 42186
AEJ93426.1 JN083852_p90 hypothetical protein phrog_3471 unknown function unknown function -1 49448 49699
AEJ93416.1 JN083852_p19 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 14290 15086
AEJ93447.1 JN083852_p69 hypothetical protein phrog_642 unknown function unknown function -1 42161 42463
AEJ93470.1 JN083852_p46 hypothetical protein phrog_1673 unknown function unknown function -1 34346 34549
AEJ93460.1 JN083852_p56 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37860 38522
AEJ93440.1 JN083852_p76 hypothetical protein phrog_6322 unknown function unknown function -1 45159 45311
AEJ93465.1 JN083852_p51 metallo-phosphoesterase phrog_221 metallo-phosphoesterase other -1 35660 36430
AEJ93402.1 JN083852_p6 lysin A phrog_1512 endolysin lysis 1 4244 5185
AEJ93438.1 JN083852_p78 hypothetical protein phrog_5476 unknown function unknown function -1 45500 45847
AEJ93414.1 JN083852_p18 major tail subunit phrog_117 major tail protein tail 1 13350 14180
AEJ93445.1 JN083852_p71 hypothetical protein phrog_5957 unknown function unknown function -1 43279 43566
AEJ93474.1 JN083852_p42 HTH DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30732 30995
AEJ93417.1 JN083852_p21 tapemeasure protein phrog_305 tail length tape measure protein tail 1 15091 17904
AEJ93455.1 JN083852_p61 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39630 40094
AEJ93457.1 JN083852_p59 hypothetical protein phrog_15660 unknown function unknown function -1 38992 39279
AEJ93449.1 JN083852_p67 hypothetical protein phrog_2903 unknown function unknown function -1 41702 41935
AEJ93441.1 JN083852_p75 hypothetical protein phrog_5066 unknown function unknown function -1 44896 45162
AEJ93471.1 JN083852_p45 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32301 34349
AEJ93458.1 JN083852_p58 hypothetical protein phrog_5993 unknown function unknown function -1 38744 38995
AEJ93418.1 JN083852_p22 minor tail subunit phrog_106 minor tail protein tail 1 17968 18981
AEJ93436.1 JN083852_p80 hypothetical protein phrog_2124 unknown function unknown function -1 46169 46318
AEJ93486.1 JN083852_p29 hypothetical protein phrog_1712 unknown function unknown function -1 23640 23939
AEJ93420.1 JN083852_p24 hypothetical protein phrog_352 minor tail protein tail 1 20791 21255
AEJ93424.1 JN083852_p28 hypothetical protein phrog_2235 minor tail protein tail 1 23254 23580
AEJ93450.1 JN083852_p66 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 40909 41715
AEJ93464.1 JN083852_p52 hypothetical protein phrog_1167 phosphofructokinase other -1 36427 36915
AEJ93398.1 JN083852_p2 hypothetical protein phrog_226 minor tail protein tail 1 841 1290
AEJ93473.1 JN083852_p43 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 30988 31695
AEJ93469.1 JN083852_p47 hypothetical protein phrog_499 unknown function unknown function -1 34546 34716
AEJ93409.1 JN083852_p13 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 11640 12014
AEJ93468.1 JN083852_p48 hypothetical protein phrog_1454 unknown function unknown function -1 34716 34952
AEJ93407.1 JN083852_p11 scaffold protein phrog_233 head scaffolding protein head and packaging 1 10091 10603
AEJ93408.1 JN083852_p12 major capsid protein phrog_10 major head protein head and packaging 1 10630 11571
AEJ93412.1 JN083852_p16 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 12513 12926
AEJ93452.1 JN083852_p64 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40404 40793
AEJ93476.1 JN083852_p40 hypothetical protein phrog_19744 unknown function unknown function -1 30239 30355
AEJ93475.1 JN083852_p41 hypothetical protein phrog_762 unknown function unknown function -1 30355 30735
AEJ93479.1 JN083852_p37 hypothetical protein phrog_2650 unknown function unknown function -1 27797 28240
AEJ93428.1 JN083852_p88 hypothetical protein phrog_25281 unknown function unknown function -1 49069 49203
AEJ93463.1 JN083852_p53 hypothetical protein phrog_4195 unknown function unknown function -1 36912 37313
AEJ93487.1 JN083852_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 503 802
AEJ93399.1 JN083852_p3 minor tail subunit phrog_1260 minor tail protein tail 1 1397 2359
AEJ93442.1 JN083852_p74 hypothetical protein phrog_1178 unknown function unknown function -1 44657 44899
AEJ93423.1 JN083852_p27 minor tail subunit phrog_2683 minor tail protein tail 1 21864 23246
AEJ93422.1 JN083852_p26 hypothetical protein phrog_404 minor tail protein tail 1 21547 21867
AEJ93406.1 JN083852_p10 capsid maturation protein phrog_193 head maturation protease head and packaging 1 9196 10035
AEJ93404.1 JN083852_p8 terminase phrog_9 terminase large subunit head and packaging 1 6015 7766
AEJ93411.1 JN083852_p15 hypothetical protein phrog_320 head closure Hc1 connector 1 12151 12513
AEJ93443.1 JN083852_p73 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 44376 44660
AEJ93454.1 JN083852_p62 hypothetical protein phrog_4539 unknown function unknown function -1 40084 40182
AEJ93433.1 JN083852_p83 hypothetical protein phrog_5927 unknown function unknown function -1 47139 47354
AEJ93461.1 JN083852_p55 hypothetical protein phrog_5270 unknown function unknown function -1 37576 37863
AEJ93459.1 JN083852_p57 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38332 38742
AEJ93439.1 JN083852_p77 hypothetical protein phrog_5561 unknown function unknown function -1 45324 45503
AEJ93483.1 JN083852_p33 hypothetical protein phrog_15643 unknown function unknown function -1 26671 26814
AEJ93444.1 JN083852_p72 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 43582 44112
AEJ93415.1 JN083852_p20 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 14290 14670
AEJ93434.1 JN083852_p82 ArdA phrog_2059 anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 46579 47142
AEJ93421.1 JN083852_p25 hypothetical protein phrog_981 minor tail protein tail 1 21248 21550
AEJ93484.1 JN083852_p32 cytidine deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 26172 26684
AEJ93413.1 JN083852_p17 hypothetical protein phrog_123 tail terminator connector 1 12927 13334