| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JN083853 |
Definition |
Mycobacterium phage Airmid, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
PVOG |
Length |
51241 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
89 |
%GC |
59.95 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEJ93533.1 | JN083853_p72 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 44644 | 44940 |
| AEJ93510.1 | JN083853_p23 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 18975 | 20774 |
| AEJ93541.1 | JN083853_p64 | hypothetical protein | phrog_30075 | unknown function | unknown function | -1 | 40722 | 41147 |
| AEJ93508.1 | JN083853_p21 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 15088 | 17901 |
| AEJ93561.1 | JN083853_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34146 | 34322 |
| AEJ93525.1 | JN083853_p80 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 46606 | 46746 |
| AEJ93546.1 | JN083853_p59 | hypothetical protein | phrog_4539 | unknown function | unknown function | -1 | 39795 | 39893 |
| AEJ93543.1 | JN083853_p62 | hypothetical protein | phrog_8372 | unknown function | unknown function | -1 | 40115 | 40288 |
| AEJ93564.1 | JN083853_p41 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30816 | 31520 |
| AEJ93547.1 | JN083853_p58 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39341 | 39805 |
| AEJ93552.1 | JN083853_p53 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37612 | 38274 |
| AEJ93498.1 | JN083853_p11 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10089 | 10601 |
| AEJ93507.1 | JN083853_p19 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 14287 | 15083 |
| AEJ93555.1 | JN083853_p50 | hypothetical protein | phrog_4195 | unknown function | unknown function | -1 | 36664 | 37065 |
| AEJ93512.1 | JN083853_p25 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 21245 | 21547 |
| AEJ93562.1 | JN083853_p43 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32126 | 34153 |
| AEJ93494.1 | JN083853_p7 | lysin B | phrog_102 | endolysin | lysis | 1 | 5180 | 5989 |
| AEJ93496.1 | JN083853_p9 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 7764 | 9197 |
| AEJ93572.1 | JN083853_p33 | hypothetical protein | phrog_15643 | unknown function | unknown function | -1 | 26665 | 26814 |
| AEJ93523.1 | JN083853_p82 | hypothetical protein | phrog_5927 | unknown function | unknown function | -1 | 47296 | 47580 |
| AEJ93521.1 | JN083853_p84 | hypothetical protein | phrog_6093 | unknown function | unknown function | -1 | 48549 | 48707 |
| AEJ93488.1 | JN083853_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 517 | 801 |
| AEJ93556.1 | JN083853_p49 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 36200 | 36667 |
| AEJ93506.1 | JN083853_p20 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14287 | 14667 |
| AEJ93531.1 | JN083853_p74 | hypothetical protein | phrog_5066 | unknown function | unknown function | -1 | 45164 | 45430 |
| AEJ93492.1 | JN083853_p5 | structural protein | phrog_356 | minor tail protein | tail | 1 | 3407 | 4048 |
| AEJ93568.1 | JN083853_p37 | hypothetical protein | phrog_2650 | unknown function | unknown function | -1 | 27803 | 28387 |
| AEJ93529.1 | JN083853_p76 | hypothetical protein | phrog_5561 | unknown function | unknown function | -1 | 45592 | 45771 |
| AEJ93511.1 | JN083853_p24 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 20788 | 21252 |
| AEJ93532.1 | JN083853_p73 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 44925 | 45167 |
| AEJ93520.1 | JN083853_p85 | hypothetical protein | phrog_6340 | unknown function | unknown function | -1 | 48710 | 49120 |
| AEJ93550.1 | JN083853_p55 | hypothetical protein | phrog_5993 | unknown function | unknown function | -1 | 38496 | 38747 |
| AEJ93509.1 | JN083853_p22 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 17965 | 18978 |
| AEJ93500.1 | JN083853_p13 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 11638 | 12012 |
| AEJ93517.1 | JN083853_p89 | hypothetical protein | phrog_3471 | unknown function | unknown function | -1 | 49605 | 49856 |
| AEJ93518.1 | JN083853_p87 | hypothetical protein | phrog_25281 | unknown function | unknown function | -1 | 49226 | 49360 |
| AEJ93519.1 | JN083853_p86 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 49152 | 49229 |
| AEJ93553.1 | JN083853_p52 | hypothetical protein | phrog_5270 | unknown function | unknown function | -1 | 37328 | 37615 |
| AEJ93489.1 | JN083853_p2 | minor tail subunit | phrog_226 | minor tail protein | tail | 1 | 839 | 1288 |
| AEJ93539.1 | JN083853_p66 | hypothetical protein | phrog_2903 | unknown function | unknown function | -1 | 41970 | 42203 |
| AEJ93491.1 | JN083853_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2465 | 3403 |
| AEJ93575.1 | JN083853_p29 | hypothetical protein | phrog_1712 | unknown function | unknown function | -1 | 23637 | 23936 |
| AEJ93576.1 | JN083853_p88 | hypothetical protein | phrog_9783 | unknown function | unknown function | -1 | 49460 | 49546 |
| AEJ93503.1 | JN083853_p16 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 12511 | 12924 |
| AEJ93514.1 | JN083853_p27 | minor tail subunit | phrog_2683 | minor tail protein | tail | 1 | 21861 | 23243 |
| AEJ93551.1 | JN083853_p54 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38084 | 38494 |
| AEJ93524.1 | JN083853_p81 | ArdA | phrog_2059 | anti-restriction protein | moron, auxiliary metabolic gene and host takeover | -1 | 46763 | 47299 |
| AEJ93557.1 | JN083853_p48 | metallo-phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35433 | 36203 |
| AEJ93574.1 | JN083853_p30 | integrase | phrog_95 | integrase | integration and excision | -1 | 23933 | 25414 |
| AEJ93522.1 | JN083853_p83 | hypothetical protein | phrog_3906 | unknown function | unknown function | -1 | 47627 | 48460 |
| AEJ93542.1 | JN083853_p63 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40285 | 40674 |
| AEJ93502.1 | JN083853_p15 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 12149 | 12511 |
| AEJ93536.1 | JN083853_p69 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42735 | 43550 |
| AEJ93563.1 | JN083853_p42 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 31576 | 32100 |
| AEJ93566.1 | JN083853_p39 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 30173 | 30562 |
| AEJ93538.1 | JN083853_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42200 | 42454 |
| AEJ93526.1 | JN083853_p79 | hypothetical protein | phrog_6649 | unknown function | unknown function | -1 | 46281 | 46487 |
| AEJ93545.1 | JN083853_p60 | hypothetical protein | phrog_6893 | unknown function | unknown function | -1 | 39886 | 39969 |
| AEJ93567.1 | JN083853_p38 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28294 | 30159 |
| AEJ93497.1 | JN083853_p10 | capsid maturation protein | phrog_193 | head maturation protease | head and packaging | 1 | 9194 | 10033 |
| AEJ93505.1 | JN083853_p18 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 13347 | 14177 |
| AEJ93504.1 | JN083853_p17 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 12924 | 13331 |
| AEJ93570.1 | JN083853_p35 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27080 | 27526 |
| AEJ93544.1 | JN083853_p61 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 39966 | 40118 |
| AEJ93548.1 | JN083853_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38977 | 39243 |
| AEJ93573.1 | JN083853_p32 | cytidine deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 26169 | 26678 |
| AEJ93565.1 | JN083853_p40 | HTH DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30572 | 30823 |
| AEJ93554.1 | JN083853_p51 | hypothetical protein | phrog_5242 | unknown function | unknown function | -1 | 37062 | 37331 |
| AEJ93549.1 | JN083853_p56 | hypothetical protein | phrog_15660 | unknown function | unknown function | -1 | 38744 | 38989 |
| AEJ93493.1 | JN083853_p6 | lysin A | phrog_1512 | endolysin | lysis | 1 | 4242 | 5183 |
| AEJ93569.1 | JN083853_p36 | hypothetical protein | phrog_5282 | unknown function | unknown function | -1 | 27516 | 27806 |
| AEJ93537.1 | JN083853_p68 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 42429 | 42731 |
| AEJ93499.1 | JN083853_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 10628 | 11569 |
| AEJ93495.1 | JN083853_p8 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6013 | 7764 |
| AEJ93527.1 | JN083853_p78 | hypothetical protein | phrog_5476 | unknown function | unknown function | -1 | 45943 | 46284 |
| AEJ93560.1 | JN083853_p45 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34319 | 34489 |
| AEJ93513.1 | JN083853_p26 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 21544 | 21864 |
| AEJ93490.1 | JN083853_p3 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 1395 | 2357 |
| AEJ93540.1 | JN083853_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41177 | 41983 |
| AEJ93558.1 | JN083853_p47 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 34813 | 35448 |
| AEJ93528.1 | JN083853_p77 | hypothetical protein | phrog_24757 | unknown function | unknown function | -1 | 45768 | 45941 |
| AEJ93516.1 | JN083853_p31 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 25650 | 26069 |
| AEJ93571.1 | JN083853_p34 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 26814 | 27047 |
| AEJ93534.1 | JN083853_p71 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 43850 | 44380 |
| AEJ93501.1 | JN083853_p14 | hypothetical protein | phrog_2348 | unknown function | unknown function | 1 | 12009 | 12152 |
| AEJ93515.1 | JN083853_p28 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 23248 | 23577 |
| AEJ93535.1 | JN083853_p70 | hypothetical protein | phrog_5957 | unknown function | unknown function | -1 | 43547 | 43834 |
| AEJ93530.1 | JN083853_p75 | hypothetical protein | phrog_6322 | unknown function | unknown function | -1 | 45427 | 45579 |
| AEJ93559.1 | JN083853_p46 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 34489 | 34794 |