Genomic map of Mycobacterium phage Airmid (JN083853)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JN083853
Definition
Mycobacterium phage Airmid, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
PVOG
Length
51241
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
89
%GC
59.95
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AEJ93533.1 JN083853_p72 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 44644 44940
AEJ93510.1 JN083853_p23 minor tail subunit phrog_110 minor tail protein tail 1 18975 20774
AEJ93541.1 JN083853_p64 hypothetical protein phrog_30075 unknown function unknown function -1 40722 41147
AEJ93508.1 JN083853_p21 tapemeasure protein phrog_305 tail length tape measure protein tail 1 15088 17901
AEJ93561.1 JN083853_p44 hypothetical protein singleton unknown function unknown function -1 34146 34322
AEJ93525.1 JN083853_p80 hypothetical protein phrog_2124 unknown function unknown function -1 46606 46746
AEJ93546.1 JN083853_p59 hypothetical protein phrog_4539 unknown function unknown function -1 39795 39893
AEJ93543.1 JN083853_p62 hypothetical protein phrog_8372 unknown function unknown function -1 40115 40288
AEJ93564.1 JN083853_p41 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 30816 31520
AEJ93547.1 JN083853_p58 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39341 39805
AEJ93552.1 JN083853_p53 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37612 38274
AEJ93498.1 JN083853_p11 scaffold protein phrog_233 head scaffolding protein head and packaging 1 10089 10601
AEJ93507.1 JN083853_p19 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 14287 15083
AEJ93555.1 JN083853_p50 hypothetical protein phrog_4195 unknown function unknown function -1 36664 37065
AEJ93512.1 JN083853_p25 hypothetical protein phrog_981 minor tail protein tail 1 21245 21547
AEJ93562.1 JN083853_p43 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32126 34153
AEJ93494.1 JN083853_p7 lysin B phrog_102 endolysin lysis 1 5180 5989
AEJ93496.1 JN083853_p9 portal protein phrog_104 portal protein head and packaging 1 7764 9197
AEJ93572.1 JN083853_p33 hypothetical protein phrog_15643 unknown function unknown function -1 26665 26814
AEJ93523.1 JN083853_p82 hypothetical protein phrog_5927 unknown function unknown function -1 47296 47580
AEJ93521.1 JN083853_p84 hypothetical protein phrog_6093 unknown function unknown function -1 48549 48707
AEJ93488.1 JN083853_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 517 801
AEJ93556.1 JN083853_p49 hypothetical protein phrog_1167 phosphofructokinase other -1 36200 36667
AEJ93506.1 JN083853_p20 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 14287 14667
AEJ93531.1 JN083853_p74 hypothetical protein phrog_5066 unknown function unknown function -1 45164 45430
AEJ93492.1 JN083853_p5 structural protein phrog_356 minor tail protein tail 1 3407 4048
AEJ93568.1 JN083853_p37 hypothetical protein phrog_2650 unknown function unknown function -1 27803 28387
AEJ93529.1 JN083853_p76 hypothetical protein phrog_5561 unknown function unknown function -1 45592 45771
AEJ93511.1 JN083853_p24 hypothetical protein phrog_352 minor tail protein tail 1 20788 21252
AEJ93532.1 JN083853_p73 hypothetical protein phrog_1178 unknown function unknown function -1 44925 45167
AEJ93520.1 JN083853_p85 hypothetical protein phrog_6340 unknown function unknown function -1 48710 49120
AEJ93550.1 JN083853_p55 hypothetical protein phrog_5993 unknown function unknown function -1 38496 38747
AEJ93509.1 JN083853_p22 minor tail subunit phrog_106 minor tail protein tail 1 17965 18978
AEJ93500.1 JN083853_p13 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 11638 12012
AEJ93517.1 JN083853_p89 hypothetical protein phrog_3471 unknown function unknown function -1 49605 49856
AEJ93518.1 JN083853_p87 hypothetical protein phrog_25281 unknown function unknown function -1 49226 49360
AEJ93519.1 JN083853_p86 hypothetical protein phrog_1445 unknown function unknown function -1 49152 49229
AEJ93553.1 JN083853_p52 hypothetical protein phrog_5270 unknown function unknown function -1 37328 37615
AEJ93489.1 JN083853_p2 minor tail subunit phrog_226 minor tail protein tail 1 839 1288
AEJ93539.1 JN083853_p66 hypothetical protein phrog_2903 unknown function unknown function -1 41970 42203
AEJ93491.1 JN083853_p4 hypothetical protein phrog_1197 tail protein tail 1 2465 3403
AEJ93575.1 JN083853_p29 hypothetical protein phrog_1712 unknown function unknown function -1 23637 23936
AEJ93576.1 JN083853_p88 hypothetical protein phrog_9783 unknown function unknown function -1 49460 49546
AEJ93503.1 JN083853_p16 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 12511 12924
AEJ93514.1 JN083853_p27 minor tail subunit phrog_2683 minor tail protein tail 1 21861 23243
AEJ93551.1 JN083853_p54 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38084 38494
AEJ93524.1 JN083853_p81 ArdA phrog_2059 anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 46763 47299
AEJ93557.1 JN083853_p48 metallo-phosphoesterase phrog_221 metallo-phosphoesterase other -1 35433 36203
AEJ93574.1 JN083853_p30 integrase phrog_95 integrase integration and excision -1 23933 25414
AEJ93522.1 JN083853_p83 hypothetical protein phrog_3906 unknown function unknown function -1 47627 48460
AEJ93542.1 JN083853_p63 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40285 40674
AEJ93502.1 JN083853_p15 hypothetical protein phrog_320 head closure Hc1 connector 1 12149 12511
AEJ93536.1 JN083853_p69 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42735 43550
AEJ93563.1 JN083853_p42 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 31576 32100
AEJ93566.1 JN083853_p39 hypothetical protein phrog_762 unknown function unknown function -1 30173 30562
AEJ93538.1 JN083853_p67 hypothetical protein phrog_520 unknown function unknown function -1 42200 42454
AEJ93526.1 JN083853_p79 hypothetical protein phrog_6649 unknown function unknown function -1 46281 46487
AEJ93545.1 JN083853_p60 hypothetical protein phrog_6893 unknown function unknown function -1 39886 39969
AEJ93567.1 JN083853_p38 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28294 30159
AEJ93497.1 JN083853_p10 capsid maturation protein phrog_193 head maturation protease head and packaging 1 9194 10033
AEJ93505.1 JN083853_p18 major tail subunit phrog_117 major tail protein tail 1 13347 14177
AEJ93504.1 JN083853_p17 hypothetical protein phrog_123 tail terminator connector 1 12924 13331
AEJ93570.1 JN083853_p35 hypothetical protein phrog_383 unknown function unknown function -1 27080 27526
AEJ93544.1 JN083853_p61 hypothetical protein phrog_1498 unknown function unknown function -1 39966 40118
AEJ93548.1 JN083853_p57 hypothetical protein phrog_397 unknown function unknown function -1 38977 39243
AEJ93573.1 JN083853_p32 cytidine deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 26169 26678
AEJ93565.1 JN083853_p40 HTH DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30572 30823
AEJ93554.1 JN083853_p51 hypothetical protein phrog_5242 unknown function unknown function -1 37062 37331
AEJ93549.1 JN083853_p56 hypothetical protein phrog_15660 unknown function unknown function -1 38744 38989
AEJ93493.1 JN083853_p6 lysin A phrog_1512 endolysin lysis 1 4242 5183
AEJ93569.1 JN083853_p36 hypothetical protein phrog_5282 unknown function unknown function -1 27516 27806
AEJ93537.1 JN083853_p68 hypothetical protein phrog_642 unknown function unknown function -1 42429 42731
AEJ93499.1 JN083853_p12 major capsid protein phrog_10 major head protein head and packaging 1 10628 11569
AEJ93495.1 JN083853_p8 terminase phrog_9 terminase large subunit head and packaging 1 6013 7764
AEJ93527.1 JN083853_p78 hypothetical protein phrog_5476 unknown function unknown function -1 45943 46284
AEJ93560.1 JN083853_p45 hypothetical protein phrog_499 unknown function unknown function -1 34319 34489
AEJ93513.1 JN083853_p26 hypothetical protein phrog_404 minor tail protein tail 1 21544 21864
AEJ93490.1 JN083853_p3 hypothetical protein phrog_1260 minor tail protein tail 1 1395 2357
AEJ93540.1 JN083853_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41177 41983
AEJ93558.1 JN083853_p47 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 34813 35448
AEJ93528.1 JN083853_p77 hypothetical protein phrog_24757 unknown function unknown function -1 45768 45941
AEJ93516.1 JN083853_p31 hypothetical protein phrog_733 excisionase integration and excision 1 25650 26069
AEJ93571.1 JN083853_p34 hypothetical protein phrog_980 unknown function unknown function -1 26814 27047
AEJ93534.1 JN083853_p71 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 43850 44380
AEJ93501.1 JN083853_p14 hypothetical protein phrog_2348 unknown function unknown function 1 12009 12152
AEJ93515.1 JN083853_p28 hypothetical protein phrog_2235 minor tail protein tail 1 23248 23577
AEJ93535.1 JN083853_p70 hypothetical protein phrog_5957 unknown function unknown function -1 43547 43834
AEJ93530.1 JN083853_p75 hypothetical protein phrog_6322 unknown function unknown function -1 45427 45579
AEJ93559.1 JN083853_p46 hypothetical protein phrog_1454 unknown function unknown function -1 34489 34794