| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JN618996 |
Definition |
Mycobacterium phage Arbiter, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Rosebushvirus; unclassified Rosebushvirus. |
DB of origin |
PVOG |
Length |
67169 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
88 |
%GC |
68.9 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEN79524.1 | JN618996_p21 | major tail subunit | phrog_792 | major tail protein | tail | 1 | 17666 | 18742 |
| AEN79535.1 | JN618996_p34 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 33966 | 34355 |
| AEN79515.1 | JN618996_p12 | hypothetical protein | phrog_776 | portal protein | head and packaging | 1 | 7818 | 9707 |
| AEN79505.1 | JN618996_p1 | transcriptional regulator | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 792 |
| AEN79586.1 | JN618996_p48 | hypothetical protein | phrog_870 | unknown function | unknown function | -1 | 43037 | 43576 |
| AEN79555.1 | JN618996_p86 | hypothetical protein | phrog_7256 | unknown function | unknown function | -1 | 65580 | 65957 |
| AEN79568.1 | JN618996_p73 | hypothetical protein | phrog_7367 | unknown function | unknown function | -1 | 60461 | 60772 |
| AEN79507.1 | JN618996_p3 | ExsB/QueC-like protein | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 1916 | 2623 |
| AEN79539.1 | JN618996_p38 | hypothetical protein | phrog_3329 | unknown function | unknown function | 1 | 36151 | 37464 |
| AEN79541.1 | JN618996_p40 | hypothetical protein | phrog_941 | unknown function | unknown function | 1 | 37812 | 38177 |
| AEN79530.1 | JN618996_p29 | tapemeasure protein | phrog_934 | tail length tape measure protein | tail | 1 | 21916 | 27555 |
| AEN79554.1 | JN618996_p87 | hypothetical protein | phrog_6718 | unknown function | unknown function | -1 | 65960 | 66151 |
| AEN79536.1 | JN618996_p35 | hypothetical protein | phrog_948 | unknown function | unknown function | 1 | 34364 | 34753 |
| AEN79532.1 | JN618996_p31 | minor tail protein | phrog_837 | minor tail protein | tail | 1 | 29003 | 30052 |
| AEN79590.1 | JN618996_p23 | hypothetical protein | phrog_1318 | unknown function | unknown function | -1 | 18915 | 19106 |
| AEN79581.1 | JN618996_p53 | hypothetical protein | phrog_1371 | unknown function | unknown function | -1 | 47239 | 47730 |
| AEN79577.1 | JN618996_p57 | hypothetical protein | phrog_3025 | unknown function | unknown function | -1 | 52586 | 52966 |
| AEN79534.1 | JN618996_p33 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 32772 | 33935 |
| AEN79567.1 | JN618996_p74 | hypothetical protein | phrog_8341 | unknown function | unknown function | -1 | 60835 | 61080 |
| AEN79588.1 | JN618996_p44 | HTH DNA binding domain protein | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39549 | 39938 |
| AEN79511.1 | JN618996_p7 | terminase | phrog_38 | terminase large subunit | head and packaging | 1 | 4320 | 6014 |
| AEN79589.1 | JN618996_p43 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39312 | 39491 |
| AEN79540.1 | JN618996_p39 | hypothetical protein | phrog_915 | unknown function | unknown function | 1 | 37495 | 37851 |
| AEN79552.1 | JN618996_p67 | hypothetical protein | phrog_928 | unknown function | unknown function | 1 | 57808 | 58521 |
| AEN79556.1 | JN618996_p85 | hypothetical protein | phrog_8227 | unknown function | unknown function | -1 | 65446 | 65583 |
| AEN79573.1 | JN618996_p68 | hypothetical protein | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 58752 | 59054 |
| AEN79563.1 | JN618996_p78 | hypothetical protein | phrog_1933 | unknown function | unknown function | -1 | 62121 | 62333 |
| AEN79564.1 | JN618996_p77 | hypothetical protein | phrog_8500 | unknown function | unknown function | -1 | 61958 | 62119 |
| AEN79546.1 | JN618996_p61 | hypothetical protein | phrog_996 | unknown function | unknown function | 1 | 54813 | 55559 |
| AEN79506.1 | JN618996_p2 | hypothetical protein | phrog_7068 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 789 | 1919 |
| AEN79582.1 | JN618996_p52 | hypothetical protein | phrog_3892 | unknown function | unknown function | -1 | 46904 | 47239 |
| AEN79512.1 | JN618996_p9 | RuvC-like protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 6447 | 7139 |
| AEN79517.1 | JN618996_p14 | hypothetical protein | phrog_2069 | unknown function | unknown function | 1 | 12154 | 12327 |
| AEN79566.1 | JN618996_p75 | hypothetical protein | phrog_7525 | unknown function | unknown function | -1 | 61178 | 61486 |
| AEN79509.1 | JN618996_p5 | QueE-like protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 3048 | 3761 |
| AEN79560.1 | JN618996_p81 | hypothetical protein | phrog_1010 | unknown function | unknown function | -1 | 63221 | 63817 |
| AEN79513.1 | JN618996_p10 | hypothetical protein | phrog_7710 | unknown function | unknown function | 1 | 7136 | 7456 |
| AEN79565.1 | JN618996_p76 | hypothetical protein | phrog_7479 | unknown function | unknown function | -1 | 61543 | 61968 |
| AEN79579.1 | JN618996_p55 | hypothetical protein | phrog_2526 | unknown function | unknown function | -1 | 50593 | 50757 |
| AEN79557.1 | JN618996_p84 | hypothetical protein | phrog_7689 | unknown function | unknown function | -1 | 65303 | 65449 |
| AEN79584.1 | JN618996_p50 | type III restriction protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 44955 | 46670 |
| AEN79547.1 | JN618996_p62 | hypothetical protein | phrog_1016 | unknown function | unknown function | 1 | 55569 | 55829 |
| AEN79550.1 | JN618996_p65 | hypothetical protein | phrog_1031 | unknown function | unknown function | 1 | 56863 | 57387 |
| AEN79553.1 | JN618996_p88 | hypothetical protein | phrog_7435 | unknown function | unknown function | -1 | 66247 | 67005 |
| AEN79543.1 | JN618996_p42 | hypothetical protein | phrog_2804 | virion structural protein | head and packaging | 1 | 38620 | 39315 |
| AEN79578.1 | JN618996_p56 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 50760 | 52589 |
| AEN79587.1 | JN618996_p45 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 40013 | 40777 |
| AEN79527.1 | JN618996_p26 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 20568 | 20921 |
| AEN79583.1 | JN618996_p51 | hypothetical protein | phrog_7912 | unknown function | unknown function | -1 | 46741 | 46902 |
| AEN79571.1 | JN618996_p70 | hypothetical protein | phrog_7876 | unknown function | unknown function | -1 | 59369 | 59863 |
| AEN79522.1 | JN618996_p19 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 16765 | 17247 |
| AEN79510.1 | JN618996_p6 | FolE-like protein | phrog_2197 | GTP cyclohydrolase | other | 1 | 3761 | 4336 |
| AEN79521.1 | JN618996_p18 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 16226 | 16768 |
| AEN79518.1 | JN618996_p15 | major capsid protein | phrog_777 | major head protein | head and packaging | 1 | 12501 | 14528 |
| AEN79548.1 | JN618996_p63 | hypothetical protein | phrog_7544 | unknown function | unknown function | 1 | 55861 | 56202 |
| AEN79574.1 | JN618996_p60 | hypothetical protein | phrog_982 | unknown function | unknown function | -1 | 54182 | 54484 |
| AEN79526.1 | JN618996_p25 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 19999 | 20559 |
| AEN79558.1 | JN618996_p83 | hypothetical protein | phrog_2972 | unknown function | unknown function | -1 | 64973 | 65266 |
| AEN79559.1 | JN618996_p82 | hypothetical protein | phrog_1221 | unknown function | unknown function | -1 | 63828 | 64898 |
| AEN79508.1 | JN618996_p4 | 6-pyruvoyl tetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 2620 | 3051 |
| AEN79549.1 | JN618996_p64 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 56199 | 56852 |
| AEN79538.1 | JN618996_p37 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 35555 | 36154 |
| AEN79544.1 | JN618996_p46 | lysin A | phrog_317 | endolysin | lysis | 1 | 40873 | 42384 |
| AEN79516.1 | JN618996_p13 | portal protein | phrog_859 | portal protein | head and packaging | 1 | 9707 | 12154 |
| AEN79529.1 | JN618996_p28 | hypothetical protein | phrog_6941 | unknown function | unknown function | 1 | 21405 | 21890 |
| AEN79537.1 | JN618996_p36 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34765 | 35409 |
| AEN79561.1 | JN618996_p80 | hypothetical protein | phrog_7394 | unknown function | unknown function | -1 | 62890 | 63111 |
| AEN79545.1 | JN618996_p47 | hypothetical protein | phrog_526 | holin | lysis | 1 | 42384 | 42920 |
| AEN79523.1 | JN618996_p20 | hypothetical protein | phrog_2525 | unknown function | unknown function | 1 | 17244 | 17576 |
| AEN79585.1 | JN618996_p49 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43591 | 44958 |
| AEN79592.1 | JN618996_p8 | hypothetical protein | phrog_5935 | unknown function | unknown function | -1 | 6011 | 6481 |
| AEN79570.1 | JN618996_p71 | hypothetical protein | phrog_8177 | unknown function | unknown function | -1 | 59878 | 60156 |
| AEN79576.1 | JN618996_p58 | hypothetical protein | phrog_993 | unknown function | unknown function | -1 | 52963 | 53454 |
| AEN79572.1 | JN618996_p69 | hypothetical protein | phrog_2089 | unknown function | unknown function | -1 | 59148 | 59393 |
| AEN79575.1 | JN618996_p59 | hypothetical protein | phrog_3835 | unknown function | unknown function | -1 | 53451 | 53921 |
| AEN79525.1 | JN618996_p24 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 19385 | 20002 |
| AEN79562.1 | JN618996_p79 | hypothetical protein | phrog_6719 | unknown function | unknown function | -1 | 62330 | 62824 |
| AEN79542.1 | JN618996_p41 | hypothetical protein | phrog_892 | tail fiber protein | tail | 1 | 38215 | 38619 |
| AEN79531.1 | JN618996_p30 | minor tail protein | phrog_838 | unknown function | unknown function | 1 | 27564 | 29000 |
| AEN79551.1 | JN618996_p66 | hypothetical protein | phrog_7186 | unknown function | unknown function | 1 | 57479 | 57811 |
| AEN79533.1 | JN618996_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 30049 | 32769 |
| AEN79528.1 | JN618996_p27 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 20921 | 21349 |
| AEN79591.1 | JN618996_p22 | hypothetical protein | phrog_7051 | unknown function | unknown function | -1 | 18802 | 18915 |
| AEN79580.1 | JN618996_p54 | DNA primase/helicase | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 47795 | 50548 |
| AEN79569.1 | JN618996_p72 | hypothetical protein | phrog_7463 | unknown function | unknown function | -1 | 60153 | 60464 |
| AEN79514.1 | JN618996_p11 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 7453 | 7791 |
| AEN79519.1 | JN618996_p16 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 14622 | 15440 |
| AEN79520.1 | JN618996_p17 | hypothetical protein | phrog_970 | unknown function | unknown function | 1 | 15440 | 16189 |