| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JN698991 |
Definition |
Mycobacterium phage Hedgerow, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Rosebushvirus; Mycobacterium virus Rosebush. |
DB of origin |
PVOG |
Length |
67451 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
68.95 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AER47256.1 | JN698991_p24 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 19232 | 20017 |
| AER47322.1 | JN698991_p92 | hypothetical protein | phrog_7435 | unknown function | unknown function | -1 | 66532 | 67287 |
| AER47300.1 | JN698991_p69 | hypothetical protein | phrog_928 | unknown function | unknown function | 1 | 57774 | 58487 |
| AER47292.1 | JN698991_p61 | hypothetical protein | phrog_982 | unknown function | unknown function | -1 | 54168 | 54470 |
| AER47317.1 | JN698991_p87 | hypothetical protein | phrog_7689 | unknown function | unknown function | -1 | 65277 | 65423 |
| AER47310.1 | JN698991_p79 | hypothetical protein | phrog_7479 | unknown function | unknown function | -1 | 61510 | 61941 |
| AER47278.1 | JN698991_p47 | lysin A | phrog_317 | endolysin | lysis | 1 | 40909 | 42408 |
| AER47253.1 | JN698991_p21 | major tail subunit | phrog_792 | major tail protein | tail | 1 | 17678 | 18757 |
| AER47261.1 | JN698991_p29 | tapemeasure protein | phrog_934 | tail length tape measure protein | tail | 1 | 21931 | 27579 |
| AER47290.1 | JN698991_p59 | hypothetical protein | phrog_993 | unknown function | unknown function | -1 | 52990 | 53478 |
| AER47234.1 | JN698991_p2 | hypothetical protein | phrog_7068 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 789 | 1928 |
| AER47295.1 | JN698991_p64 | hypothetical protein | phrog_1016 | unknown function | unknown function | 1 | 55555 | 55815 |
| AER47308.1 | JN698991_p77 | hypothetical protein | phrog_8341 | unknown function | unknown function | -1 | 60802 | 61047 |
| AER47266.1 | JN698991_p34 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 33990 | 34379 |
| AER47282.1 | JN698991_p51 | type III restriction helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 44979 | 46694 |
| AER47318.1 | JN698991_p88 | hypothetical protein | phrog_8227 | unknown function | unknown function | -1 | 65420 | 65557 |
| AER47249.1 | JN698991_p17 | hypothetical protein | phrog_970 | unknown function | unknown function | 1 | 15452 | 16201 |
| AER47281.1 | JN698991_p50 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43615 | 44982 |
| AER47291.1 | JN698991_p60 | hypothetical protein | phrog_3835 | unknown function | unknown function | -1 | 53475 | 53915 |
| AER47236.1 | JN698991_p4 | 6-pyruvoyl tetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 2629 | 3060 |
| AER47298.1 | JN698991_p67 | hypothetical protein | phrog_1031 | unknown function | unknown function | 1 | 56820 | 57353 |
| AER47264.1 | JN698991_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 30073 | 32793 |
| AER47307.1 | JN698991_p76 | hypothetical protein | phrog_7367 | unknown function | unknown function | -1 | 60428 | 60739 |
| AER47302.1 | JN698991_p71 | hypothetical protein | phrog_4461 | unknown function | unknown function | -1 | 59007 | 59111 |
| AER47233.1 | JN698991_p1 | transcriptional regulator | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 792 |
| AER47263.1 | JN698991_p31 | minor tail protein | phrog_837 | minor tail protein | tail | 1 | 29027 | 30076 |
| AER47285.1 | JN698991_p54 | hypothetical protein | phrog_1371 | unknown function | unknown function | -1 | 47263 | 47754 |
| AER47301.1 | JN698991_p70 | hypothetical protein | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 58718 | 59020 |
| AER47294.1 | JN698991_p63 | hypothetical protein | phrog_996 | unknown function | unknown function | 1 | 54844 | 55545 |
| AER47313.1 | JN698991_p83 | hypothetical protein | phrog_7394 | unknown function | unknown function | -1 | 62864 | 63085 |
| AER47289.1 | JN698991_p58 | hypothetical protein | phrog_3025 | unknown function | unknown function | -1 | 52613 | 52996 |
| AER47270.1 | JN698991_p39 | hypothetical protein | phrog_3329 | unknown function | unknown function | 1 | 36175 | 37488 |
| AER47306.1 | JN698991_p75 | hypothetical protein | phrog_7463 | unknown function | unknown function | -1 | 60123 | 60431 |
| AER47241.1 | JN698991_p9 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 6573 | 7148 |
| AER47257.1 | JN698991_p25 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 20014 | 20574 |
| AER47275.1 | JN698991_p44 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39336 | 39542 |
| AER47265.1 | JN698991_p33 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 32796 | 33959 |
| AER47255.1 | JN698991_p23 | hypothetical protein | phrog_1318 | unknown function | unknown function | -1 | 18930 | 19121 |
| AER47304.1 | JN698991_p73 | hypothetical protein | phrog_7876 | unknown function | unknown function | -1 | 59329 | 59823 |
| AER47312.1 | JN698991_p82 | hypothetical protein | phrog_6719 | unknown function | unknown function | -1 | 62303 | 62797 |
| AER47280.1 | JN698991_p49 | hypothetical protein | phrog_870 | unknown function | unknown function | -1 | 43061 | 43600 |
| AER47286.1 | JN698991_p55 | primase/helicase | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 47819 | 50575 |
| AER47262.1 | JN698991_p30 | minor tail protein | phrog_838 | unknown function | unknown function | 1 | 27588 | 29024 |
| AER47239.1 | JN698991_p7 | terminase | phrog_38 | terminase large subunit | head and packaging | 1 | 4329 | 6023 |
| AER47321.1 | JN698991_p91 | hypothetical protein | phrog_6718 | unknown function | unknown function | -1 | 66245 | 66436 |
| AER47245.1 | JN698991_p13 | portal protein | phrog_859 | portal protein | head and packaging | 1 | 9716 | 12163 |
| AER47305.1 | JN698991_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59838 | 60080 |
| AER47274.1 | JN698991_p43 | structural protein | phrog_2804 | virion structural protein | head and packaging | 1 | 38644 | 39339 |
| AER47279.1 | JN698991_p48 | holin | phrog_526 | holin | lysis | 1 | 42408 | 42944 |
| AER47259.1 | JN698991_p27 | tail assembly chaperone | phrog_5 | tail completion or Neck1 protein | connector | 1 | 20936 | 21364 |
| AER47235.1 | JN698991_p3 | QueC | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 1925 | 2632 |
| AER47320.1 | JN698991_p90 | hypothetical protein | phrog_9162 | unknown function | unknown function | -1 | 65883 | 66242 |
| AER47244.1 | JN698991_p12 | hypothetical protein | phrog_776 | portal protein | head and packaging | 1 | 7827 | 9716 |
| AER47252.1 | JN698991_p20 | hypothetical protein | phrog_2525 | unknown function | unknown function | 1 | 17256 | 17588 |
| AER47324.1 | JN698991_p80 | hypothetical protein | phrog_8500 | unknown function | unknown function | -1 | 61931 | 62092 |
| AER47296.1 | JN698991_p65 | hypothetical protein | phrog_7544 | unknown function | unknown function | 1 | 55827 | 56168 |
| AER47260.1 | JN698991_p28 | tail assembly chaperone | phrog_6941 | unknown function | unknown function | 1 | 21420 | 21905 |
| AER47272.1 | JN698991_p41 | hypothetical protein | phrog_941 | unknown function | unknown function | 1 | 37836 | 38201 |
| AER47277.1 | JN698991_p46 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 40037 | 40801 |
| AER47284.1 | JN698991_p53 | hypothetical protein | phrog_3892 | unknown function | unknown function | -1 | 46928 | 47263 |
| AER47258.1 | JN698991_p26 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 20583 | 20936 |
| AER47271.1 | JN698991_p40 | hypothetical protein | phrog_915 | unknown function | unknown function | 1 | 37519 | 37875 |
| AER47243.1 | JN698991_p11 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 7462 | 7800 |
| AER47251.1 | JN698991_p19 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 16777 | 17259 |
| AER47250.1 | JN698991_p18 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 16238 | 16780 |
| AER47323.1 | JN698991_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35457 | 35582 |
| AER47254.1 | JN698991_p22 | hypothetical protein | phrog_7051 | unknown function | unknown function | -1 | 18817 | 18930 |
| AER47315.1 | JN698991_p85 | hypothetical protein | phrog_1221 | unknown function | unknown function | -1 | 63802 | 64872 |
| AER47288.1 | JN698991_p57 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 50787 | 52616 |
| AER47267.1 | JN698991_p35 | hypothetical protein | phrog_948 | unknown function | unknown function | 1 | 34388 | 34777 |
| AER47299.1 | JN698991_p68 | hypothetical protein | phrog_7186 | unknown function | unknown function | 1 | 57394 | 57777 |
| AER47287.1 | JN698991_p56 | hypothetical protein | phrog_2526 | unknown function | unknown function | -1 | 50620 | 50784 |
| AER47303.1 | JN698991_p72 | hypothetical protein | phrog_2089 | unknown function | unknown function | -1 | 59108 | 59353 |
| AER47276.1 | JN698991_p45 | hypothetical protein | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39573 | 39962 |
| AER47309.1 | JN698991_p78 | hypothetical protein | phrog_7525 | unknown function | unknown function | -1 | 61145 | 61462 |
| AER47238.1 | JN698991_p6 | FolE | phrog_2197 | GTP cyclohydrolase | other | 1 | 3770 | 4345 |
| AER47316.1 | JN698991_p86 | hypothetical protein | phrog_2972 | unknown function | unknown function | -1 | 64947 | 65240 |
| AER47297.1 | JN698991_p66 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 56165 | 56818 |
| AER47269.1 | JN698991_p38 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 35579 | 36178 |
| AER47242.1 | JN698991_p10 | hypothetical protein | phrog_7710 | unknown function | unknown function | 1 | 7145 | 7465 |
| AER47314.1 | JN698991_p84 | hypothetical protein | phrog_1010 | unknown function | unknown function | -1 | 63195 | 63791 |
| AER47240.1 | JN698991_p8 | hypothetical protein | phrog_5935 | unknown function | unknown function | -1 | 6020 | 6490 |
| AER47248.1 | JN698991_p16 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 14634 | 15452 |
| AER47246.1 | JN698991_p14 | hypothetical protein | phrog_2069 | unknown function | unknown function | 1 | 12163 | 12336 |
| AER47319.1 | JN698991_p89 | hypothetical protein | phrog_7256 | unknown function | unknown function | -1 | 65554 | 65886 |
| AER47283.1 | JN698991_p52 | hypothetical protein | phrog_7912 | unknown function | unknown function | -1 | 46765 | 46926 |
| AER47247.1 | JN698991_p15 | major capsid protein | phrog_777 | major head protein | head and packaging | 1 | 12510 | 14540 |
| AER47311.1 | JN698991_p81 | hypothetical protein | phrog_1933 | unknown function | unknown function | -1 | 62094 | 62306 |
| AER47237.1 | JN698991_p5 | QueU | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 3057 | 3770 |
| AER47293.1 | JN698991_p62 | hypothetical protein | phrog_8754 | unknown function | unknown function | 1 | 54588 | 54857 |
| AER47273.1 | JN698991_p42 | structural protein | phrog_892 | tail fiber protein | tail | 1 | 38227 | 38643 |
| AER47268.1 | JN698991_p36 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34789 | 35433 |