| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JN811560 |
Definition |
Pseudomonas phage JBD26, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus. |
DB of origin |
PVOG |
Length |
37840 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
64.11 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AEY99451.1 | JN811560_p22 | hypothetical protein | phrog_3648 | unknown function | unknown function | 1 | 10751 | 11098 |
| AEY99456.1 | JN811560_p46 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 23324 | 23803 |
| AEY99432.1 | JN811560_p2 | hypothetical protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1046 | 1390 |
| AGC24046.1 | JN811560_p39 | hypothetical protein | phrog_10291 | unknown function | unknown function | -1 | 19822 | 19938 |
| AEY99439.2 | JN811560_p38 | hypothetical protein | phrog_3865 | unknown function | unknown function | 1 | 19466 | 19690 |
| AEY99455.1 | JN811560_p16 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 8680 | 8961 |
| AEY99477.1 | JN811560_p61 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 37519 | 37743 |
| AEY99446.1 | JN811560_p54 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 30836 | 32539 |
| AEY99447.2 | JN811560_p44 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 22711 | 22914 |
| AEY99473.1 | JN811560_p56 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 33359 | 33598 |
| AEY99483.1 | JN811560_p45 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 22911 | 23327 |
| AEY99433.1 | JN811560_p26 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 12168 | 12569 |
| AGC24044.1 | JN811560_p4 | hypothetical protein | phrog_8647 | unknown function | unknown function | 1 | 1827 | 2153 |
| AEY99480.1 | JN811560_p48 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 24003 | 24773 |
| AEY99461.1 | JN811560_p60 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 37161 | 37445 |
| AEY99479.1 | JN811560_p58 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 33803 | 36010 |
| AEY99484.1 | JN811560_p27 | hypothetical protein | phrog_8661 | unknown function | unknown function | 1 | 12562 | 12675 |
| AEY99434.2 | JN811560_p51 | phage tail tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 25387 | 28947 |
| AEY99458.1 | JN811560_p49 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 24777 | 25262 |
| AEY99435.1 | JN811560_p34 | protein F-like protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 17117 | 18403 |
| AEY99470.1 | JN811560_p19 | hypothetical protein | phrog_4093 | unknown function | unknown function | 1 | 9512 | 9808 |
| AEY99452.1 | JN811560_p53 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 29913 | 30836 |
| AEY99454.1 | JN811560_p11 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6862 | 7275 |
| AEY99448.1 | JN811560_p9 | hypothetical protein | phrog_3190 | unknown function | unknown function | 1 | 6126 | 6761 |
| AEY99465.1 | JN811560_p35 | phage virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 18403 | 18870 |
| AEY99469.1 | JN811560_p10 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 6746 | 6862 |
| AEY99436.1 | JN811560_p32 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 13864 | 15519 |
| AEY99471.1 | JN811560_p20 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 9805 | 10212 |
| AEY99453.1 | JN811560_p47 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 23791 | 23970 |
| AEY99431.1 | JN811560_p8 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 5389 | 6054 |
| AEY99466.1 | JN811560_p12 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 7277 | 7549 |
| AEY99459.1 | JN811560_p14 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 8086 | 8367 |
| AEY99474.1 | JN811560_p55 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 32529 | 33350 |
| AEY99427.1 | JN811560_p43 | hypothetical protein | phrog_7976 | unknown function | unknown function | 1 | 22374 | 22676 |
| AEY99450.1 | JN811560_p24 | structural protein P5 | phrog_873 | endolysin | head and packaging | 1 | 11513 | 11929 |
| AEY99478.2 | JN811560_p21 | mor transcription activator family protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 10238 | 10648 |
| AEY99437.1 | JN811560_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1387 | 1827 |
| AEY99445.1 | JN811560_p33 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 15531 | 17117 |
| AGC24045.1 | JN811560_p5 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 2150 | 2560 |
| AEY99467.1 | JN811560_p23 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 11091 | 11513 |
| AEY99444.1 | JN811560_p1 | peptidase S24-like protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 174 | 896 |
| AEY99468.1 | JN811560_p25 | hypothetical protein | phrog_4057 | unknown function | unknown function | 1 | 11929 | 12171 |
| AEY99482.1 | JN811560_p59 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 36007 | 37158 |
| AEY99449.1 | JN811560_p30 | hypothetical protein | phrog_13614 | unknown function | unknown function | 1 | 13377 | 13628 |
| AEY99441.1 | JN811560_p41 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | 1 | 21026 | 21424 |
| AEY99485.1 | JN811560_p31 | hypothetical protein | phrog_14530 | unknown function | unknown function | -1 | 13582 | 13833 |
| AEY99462.1 | JN811560_p17 | hypothetical protein | phrog_3223 | unknown function | unknown function | 1 | 8963 | 9169 |
| AEY99472.1 | JN811560_p18 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 9172 | 9441 |
| AEY99464.1 | JN811560_p36 | hypothetical protein | phrog_8786 | type I-E anti-CRISPR protein | moron, auxiliary metabolic gene and host takeover | 1 | 18983 | 19180 |
| AEY99442.1 | JN811560_p37 | hypothetical protein | phrog_9769 | type I-F anti-CRISPR protein | moron, auxiliary metabolic gene and host takeover | 1 | 19177 | 19479 |
| AEY99438.1 | JN811560_p42 | major head protein,subunit | phrog_371 | major head protein | head and packaging | 1 | 21452 | 22360 |
| AEY99481.1 | JN811560_p6 | DNA-binding domain protein | phrog_310 | transposase | integration and excision | 1 | 2553 | 4625 |
| AEY99430.1 | JN811560_p52 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28955 | 29911 |
| AEY99429.1 | JN811560_p50 | hypothetical protein | phrog_10839 | unknown function | unknown function | 1 | 25262 | 25390 |
| AEY99463.1 | JN811560_p28 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 12680 | 12868 |
| AEY99457.1 | JN811560_p13 | Gam-like protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7566 | 8084 |
| AEY99460.1 | JN811560_p40 | hypothetical protein | phrog_328 | head maturation protease | head and packaging | 1 | 19910 | 21016 |
| AEY99440.1 | JN811560_p29 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12877 | 13377 |
| AEY99475.1 | JN811560_p7 | ATPase, AAA family | phrog_296 | DNA transposition protein | integration and excision | 1 | 4640 | 5392 |
| AEY99428.1 | JN811560_p15 | hypothetical protein | phrog_4367 | unknown function | unknown function | 1 | 8369 | 8677 |
| AEY99443.1 | JN811560_p57 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 33595 | 33813 |