Genomic map of Pseudomonas phage PaMx25 (JQ067084)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JQ067084
Definition
Pseudomonas phage PaMx25, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nipunavirus; Pseudomonas virus PaMx25.
DB of origin
NUCCORE
Length
57899
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
58.59
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ALH23776.1 JQ067084_p54 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 43184 43924
ALH23777.1 JQ067084_p53 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 42280 43182
ALH23782.1 JQ067084_p48 hypothetical protein phrog_54 DksA-like zinc-finger protein other -1 39298 39489
ALH23799.1 JQ067084_p31 hypothetical protein phrog_6168 unknown function unknown function -1 25516 25722
ALH23821.1 JQ067084_p9 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 6459 7274
ALH23769.1 JQ067084_p61 hypothetical protein phrog_26940 unknown function unknown function 1 49140 49304
ALH23818.1 JQ067084_p12 hypothetical protein phrog_17843 unknown function unknown function 1 9105 9815
ALH23814.1 JQ067084_p16 tail terminator protein phrog_179 tail terminator connector 1 11047 11457
ALH23786.1 JQ067084_p44 hypothetical protein phrog_27908 unknown function unknown function -1 35676 35849
ALH23783.1 JQ067084_p47 RecB exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 38338 39270
ALH23761.1 JQ067084_p69 hypothetical protein phrog_21505 unknown function unknown function 1 52908 53330
ALH23806.1 JQ067084_p24 virion structural protein phrog_1082 tail assembly protein tail 1 19725 21398
ALH23758.1 JQ067084_p72 hypothetical protein phrog_21857 unknown function unknown function 1 55827 56060
ALH23809.1 JQ067084_p21 tail tape measure protein phrog_3336 tail length tape measure protein tail 1 14254 17184
ALH23785.1 JQ067084_p45 hypothetical protein phrog_21588 unknown function unknown function -1 35890 36417
ALH23792.1 JQ067084_p38 hypothetical protein singleton unknown function unknown function -1 31421 31795
ALH23787.1 JQ067084_p43 hypothetical protein phrog_7864 unknown function unknown function -1 35015 35686
ALH23781.2 JQ067084_p49 hypothetical protein phrog_13350 unknown function unknown function -1 39552 40394
ALH23784.1 JQ067084_p46 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 36566 38341
ALH23778.1 JQ067084_p52 hypothetical protein singleton unknown function unknown function -1 42011 42283
ALH23802.1 JQ067084_p28 virion structural protein phrog_1101 tail protein tail 1 22634 24811
ALH23795.1 JQ067084_p35 tRNA ribosyltransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover -1 29428 30366
ALH23779.1 JQ067084_p51 DNA topoisomerase phrog_6247 DNA topoisomerase DNA, RNA and nucleotide metabolism -1 41124 42014
ALH23812.1 JQ067084_p18 structural protein phrog_313 Tail assembly chaperone tail 1 13050 13469
ALH23798.1 JQ067084_p32 hypothetical protein phrog_12453 unknown function unknown function -1 25784 26062
ALH23823.1 JQ067084_p7 portal protein phrog_145 portal protein head and packaging 1 3644 5197
ALH23800.1 JQ067084_p30 hypothetical protein phrog_18970 unknown function unknown function -1 25179 25544
ALH23796.1 JQ067084_p34 replicative clamp phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 28475 29428
ALH23765.1 JQ067084_p65 hypothetical protein phrog_4301 unknown function unknown function 1 51199 51627
ALH23801.1 JQ067084_p29 hypothetical protein singleton unknown function unknown function 1 24811 25095
ALH23826.1 JQ067084_p4 membrane protein phrog_5975 unknown function unknown function 1 1091 1654
ALH23774.1 JQ067084_p56 hypothetical protein phrog_2480 unknown function unknown function -1 44366 44818
ALH23820.1 JQ067084_p10 major head protein phrog_247 major head protein head and packaging 1 7421 8455
ALH23827.1 JQ067084_p3 membrane protein phrog_785 holin lysis 1 748 1113
ALH23771.1 JQ067084_p59 hypothetical protein phrog_11967 unknown function unknown function -1 47762 48004
ALH23791.1 JQ067084_p39 QueD-like protein phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 31768 32190
ALH23794.1 JQ067084_p36 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism -1 30363 30809
ALH23811.1 JQ067084_p19 hypothetical protein phrog_3817 tail chaperonin tail 1 13580 13825
ALH23807.1 JQ067084_p23 virion structural protein phrog_687 structural protein head and packaging 1 18725 19720
ALH23768.1 JQ067084_p62 hypothetical protein phrog_3633 unknown function unknown function 1 49329 49631
ALH23770.1 JQ067084_p60 hypothetical protein phrog_20983 unknown function unknown function -1 48095 48739
ALH23817.1 JQ067084_p13 virion structural protein phrog_21641 virion structural protein head and packaging 1 9819 10151
ALH23793.1 JQ067084_p37 GTP cyclohydrolase phrog_2197 GTP cyclohydrolase other -1 30865 31440
ALH23772.1 JQ067084_p58 primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 45315 47765
ALH23775.1 JQ067084_p55 ribonuclease H like protein phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 43921 44388
ALH23759.1 JQ067084_p71 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 55369 55830
ALH23764.1 JQ067084_p66 DenV DNA-repair glycosylase phrog_1183 endonuclease V N-glycosylase UV repair enzyme DNA, RNA and nucleotide metabolism 1 51624 52109
ALH23805.1 JQ067084_p25 virion structural protein phrog_778 tail assembly protein tail 1 21395 22204
ALH23824.1 JQ067084_p6 terminase large subunit phrog_2 terminase large subunit head and packaging 1 2309 3631
ALH23797.1 JQ067084_p33 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 26246 28423
ALH23813.1 JQ067084_p17 major tail structural protein phrog_290 minor tail protein tail 1 11462 12991
ALH23763.1 JQ067084_p67 Znf domain-containing protein phrog_4276 unknown function unknown function 1 52106 52393
ALH23767.1 JQ067084_p63 hypothetical protein phrog_25433 unknown function unknown function 1 50046 50678
ALH23789.1 JQ067084_p41 QueE-like protein phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 33599 34303
ALH23829.1 JQ067084_p1 membrane protein singleton unknown function unknown function 1 21 131
ALH23828.1 JQ067084_p2 lytic transglycosylase phrog_4928 unknown function unknown function 1 128 652
ALH23815.1 JQ067084_p15 virion structural protein phrog_161 head closure Hc1 connector 1 10667 11050
ALH23825.1 JQ067084_p5 terminase small subunit phrog_51 terminase small subunit head and packaging 1 1866 2312
ALH23808.1 JQ067084_p22 virion structural protein phrog_687 structural protein head and packaging 1 17199 18713
ALH23804.1 JQ067084_p26 virion structural protein phrog_1180 tail assembly chaperone tail 1 22214 22447
ALH23756.1 JQ067084_p74 hypothetical protein phrog_21599 unknown function unknown function 1 57598 57852
ALH23819.1 JQ067084_p11 hypothetical protein phrog_11997 unknown function unknown function 1 8522 9031
ALH23788.1 JQ067084_p42 hypothetical protein phrog_18634 unknown function unknown function -1 34394 34918
ALH23816.1 JQ067084_p14 virion structural protein phrog_477 head-tail adaptor Ad1 connector 1 10151 10663
ALH23803.1 JQ067084_p27 hypothetical protein phrog_1196 tail assembly chaperone tail 1 22468 22647
ALH23773.1 JQ067084_p57 nucleotide pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other -1 44827 45219
ALH23822.1 JQ067084_p8 morphogenesis protein phrog_241 head morphogenesis head and packaging 1 5201 6400
ALH23760.1 JQ067084_p70 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 53396 55291
ALH23766.1 JQ067084_p64 hypothetical protein phrog_17558 unknown function unknown function 1 50681 51199
ALH23780.1 JQ067084_p50 RecA ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 40399 41124
ALH23790.1 JQ067084_p40 QueC-like protein phrog_10428 L-glutamine-D-fructose-6-phosphate aminotransferase other -1 32195 33595
ALH23757.1 JQ067084_p73 UvrD helicase phrog_1967 DNA helicase DNA, RNA and nucleotide metabolism 1 56153 57601
ALH23810.1 JQ067084_p20 virion structural protein phrog_169 tail completion or Neck1 protein connector 1 13826 14254
ALH23762.1 JQ067084_p68 nucleotide triphosphate hydrolase phrog_10855 hydrolase other 1 52390 52911