| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ067084 |
Definition |
Pseudomonas phage PaMx25, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nipunavirus; Pseudomonas virus PaMx25. |
DB of origin |
NUCCORE |
Length |
57899 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
58.59 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALH23776.1 | JQ067084_p54 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 43184 | 43924 |
| ALH23777.1 | JQ067084_p53 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 42280 | 43182 |
| ALH23782.1 | JQ067084_p48 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 39298 | 39489 |
| ALH23799.1 | JQ067084_p31 | hypothetical protein | phrog_6168 | unknown function | unknown function | -1 | 25516 | 25722 |
| ALH23821.1 | JQ067084_p9 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6459 | 7274 |
| ALH23769.1 | JQ067084_p61 | hypothetical protein | phrog_26940 | unknown function | unknown function | 1 | 49140 | 49304 |
| ALH23818.1 | JQ067084_p12 | hypothetical protein | phrog_17843 | unknown function | unknown function | 1 | 9105 | 9815 |
| ALH23814.1 | JQ067084_p16 | tail terminator protein | phrog_179 | tail terminator | connector | 1 | 11047 | 11457 |
| ALH23786.1 | JQ067084_p44 | hypothetical protein | phrog_27908 | unknown function | unknown function | -1 | 35676 | 35849 |
| ALH23783.1 | JQ067084_p47 | RecB exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 38338 | 39270 |
| ALH23761.1 | JQ067084_p69 | hypothetical protein | phrog_21505 | unknown function | unknown function | 1 | 52908 | 53330 |
| ALH23806.1 | JQ067084_p24 | virion structural protein | phrog_1082 | tail assembly protein | tail | 1 | 19725 | 21398 |
| ALH23758.1 | JQ067084_p72 | hypothetical protein | phrog_21857 | unknown function | unknown function | 1 | 55827 | 56060 |
| ALH23809.1 | JQ067084_p21 | tail tape measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 14254 | 17184 |
| ALH23785.1 | JQ067084_p45 | hypothetical protein | phrog_21588 | unknown function | unknown function | -1 | 35890 | 36417 |
| ALH23792.1 | JQ067084_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31421 | 31795 |
| ALH23787.1 | JQ067084_p43 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 35015 | 35686 |
| ALH23781.2 | JQ067084_p49 | hypothetical protein | phrog_13350 | unknown function | unknown function | -1 | 39552 | 40394 |
| ALH23784.1 | JQ067084_p46 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 36566 | 38341 |
| ALH23778.1 | JQ067084_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42011 | 42283 |
| ALH23802.1 | JQ067084_p28 | virion structural protein | phrog_1101 | tail protein | tail | 1 | 22634 | 24811 |
| ALH23795.1 | JQ067084_p35 | tRNA ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 29428 | 30366 |
| ALH23779.1 | JQ067084_p51 | DNA topoisomerase | phrog_6247 | DNA topoisomerase | DNA, RNA and nucleotide metabolism | -1 | 41124 | 42014 |
| ALH23812.1 | JQ067084_p18 | structural protein | phrog_313 | Tail assembly chaperone | tail | 1 | 13050 | 13469 |
| ALH23798.1 | JQ067084_p32 | hypothetical protein | phrog_12453 | unknown function | unknown function | -1 | 25784 | 26062 |
| ALH23823.1 | JQ067084_p7 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 3644 | 5197 |
| ALH23800.1 | JQ067084_p30 | hypothetical protein | phrog_18970 | unknown function | unknown function | -1 | 25179 | 25544 |
| ALH23796.1 | JQ067084_p34 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 28475 | 29428 |
| ALH23765.1 | JQ067084_p65 | hypothetical protein | phrog_4301 | unknown function | unknown function | 1 | 51199 | 51627 |
| ALH23801.1 | JQ067084_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24811 | 25095 |
| ALH23826.1 | JQ067084_p4 | membrane protein | phrog_5975 | unknown function | unknown function | 1 | 1091 | 1654 |
| ALH23774.1 | JQ067084_p56 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 44366 | 44818 |
| ALH23820.1 | JQ067084_p10 | major head protein | phrog_247 | major head protein | head and packaging | 1 | 7421 | 8455 |
| ALH23827.1 | JQ067084_p3 | membrane protein | phrog_785 | holin | lysis | 1 | 748 | 1113 |
| ALH23771.1 | JQ067084_p59 | hypothetical protein | phrog_11967 | unknown function | unknown function | -1 | 47762 | 48004 |
| ALH23791.1 | JQ067084_p39 | QueD-like protein | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 31768 | 32190 |
| ALH23794.1 | JQ067084_p36 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 30363 | 30809 |
| ALH23811.1 | JQ067084_p19 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 13580 | 13825 |
| ALH23807.1 | JQ067084_p23 | virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 18725 | 19720 |
| ALH23768.1 | JQ067084_p62 | hypothetical protein | phrog_3633 | unknown function | unknown function | 1 | 49329 | 49631 |
| ALH23770.1 | JQ067084_p60 | hypothetical protein | phrog_20983 | unknown function | unknown function | -1 | 48095 | 48739 |
| ALH23817.1 | JQ067084_p13 | virion structural protein | phrog_21641 | virion structural protein | head and packaging | 1 | 9819 | 10151 |
| ALH23793.1 | JQ067084_p37 | GTP cyclohydrolase | phrog_2197 | GTP cyclohydrolase | other | -1 | 30865 | 31440 |
| ALH23772.1 | JQ067084_p58 | primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 45315 | 47765 |
| ALH23775.1 | JQ067084_p55 | ribonuclease H like protein | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 43921 | 44388 |
| ALH23759.1 | JQ067084_p71 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 55369 | 55830 |
| ALH23764.1 | JQ067084_p66 | DenV DNA-repair glycosylase | phrog_1183 | endonuclease V N-glycosylase UV repair enzyme | DNA, RNA and nucleotide metabolism | 1 | 51624 | 52109 |
| ALH23805.1 | JQ067084_p25 | virion structural protein | phrog_778 | tail assembly protein | tail | 1 | 21395 | 22204 |
| ALH23824.1 | JQ067084_p6 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 2309 | 3631 |
| ALH23797.1 | JQ067084_p33 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26246 | 28423 |
| ALH23813.1 | JQ067084_p17 | major tail structural protein | phrog_290 | minor tail protein | tail | 1 | 11462 | 12991 |
| ALH23763.1 | JQ067084_p67 | Znf domain-containing protein | phrog_4276 | unknown function | unknown function | 1 | 52106 | 52393 |
| ALH23767.1 | JQ067084_p63 | hypothetical protein | phrog_25433 | unknown function | unknown function | 1 | 50046 | 50678 |
| ALH23789.1 | JQ067084_p41 | QueE-like protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 33599 | 34303 |
| ALH23829.1 | JQ067084_p1 | membrane protein | singleton | unknown function | unknown function | 1 | 21 | 131 |
| ALH23828.1 | JQ067084_p2 | lytic transglycosylase | phrog_4928 | unknown function | unknown function | 1 | 128 | 652 |
| ALH23815.1 | JQ067084_p15 | virion structural protein | phrog_161 | head closure Hc1 | connector | 1 | 10667 | 11050 |
| ALH23825.1 | JQ067084_p5 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 1866 | 2312 |
| ALH23808.1 | JQ067084_p22 | virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 17199 | 18713 |
| ALH23804.1 | JQ067084_p26 | virion structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 22214 | 22447 |
| ALH23756.1 | JQ067084_p74 | hypothetical protein | phrog_21599 | unknown function | unknown function | 1 | 57598 | 57852 |
| ALH23819.1 | JQ067084_p11 | hypothetical protein | phrog_11997 | unknown function | unknown function | 1 | 8522 | 9031 |
| ALH23788.1 | JQ067084_p42 | hypothetical protein | phrog_18634 | unknown function | unknown function | -1 | 34394 | 34918 |
| ALH23816.1 | JQ067084_p14 | virion structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 10151 | 10663 |
| ALH23803.1 | JQ067084_p27 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 22468 | 22647 |
| ALH23773.1 | JQ067084_p57 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 44827 | 45219 |
| ALH23822.1 | JQ067084_p8 | morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 5201 | 6400 |
| ALH23760.1 | JQ067084_p70 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 53396 | 55291 |
| ALH23766.1 | JQ067084_p64 | hypothetical protein | phrog_17558 | unknown function | unknown function | 1 | 50681 | 51199 |
| ALH23780.1 | JQ067084_p50 | RecA ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 40399 | 41124 |
| ALH23790.1 | JQ067084_p40 | QueC-like protein | phrog_10428 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 32195 | 33595 |
| ALH23757.1 | JQ067084_p73 | UvrD helicase | phrog_1967 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 56153 | 57601 |
| ALH23810.1 | JQ067084_p20 | virion structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 13826 | 14254 |
| ALH23762.1 | JQ067084_p68 | nucleotide triphosphate hydrolase | phrog_10855 | hydrolase | other | 1 | 52390 | 52911 |