| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ067085 |
Definition |
Pseudomonas phage PaMx73, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; Pseudomonas virus D3112. |
DB of origin |
PVOG |
Length |
36570 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
64.19 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AII21872.1 | JQ067085_p30 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 17138 | 17605 |
| AII21880.1 | JQ067085_p22 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 10882 | 11283 |
| AII21889.1 | JQ067085_p13 | hypothetical protein | phrog_16970 | unknown function | unknown function | 1 | 7041 | 7487 |
| AII21848.1 | JQ067085_p54 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 34748 | 35896 |
| AII21877.1 | JQ067085_p25 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 11591 | 12091 |
| AII21884.1 | JQ067085_p18 | hypothetical protein | phrog_3648 | unknown function | unknown function | 1 | 9465 | 9812 |
| AII21868.1 | JQ067085_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18557 | 18637 |
| AII21879.1 | JQ067085_p23 | hypothetical protein | phrog_8661 | unknown function | unknown function | 1 | 11276 | 11389 |
| AII21866.1 | JQ067085_p36 | Virion structural protein | phrog_1731 | virion structural protein | head and packaging | 1 | 19761 | 20159 |
| AII21870.1 | JQ067085_p32 | type I-F anti-CRISPR protein | phrog_9769 | type I-F anti-CRISPR protein | moron, auxiliary metabolic gene and host takeover | 1 | 17912 | 18214 |
| AII21871.1 | JQ067085_p31 | type I-E anti-CRISPR protein | phrog_8786 | type I-E anti-CRISPR protein | moron, auxiliary metabolic gene and host takeover | 1 | 17718 | 17915 |
| AII21849.1 | JQ067085_p53 | Virion structural protein | phrog_1101 | tail protein | tail | 1 | 32544 | 34751 |
| AII21858.1 | JQ067085_p44 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 23513 | 23998 |
| AII21873.1 | JQ067085_p29 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 15852 | 17138 |
| AII21896.1 | JQ067085_p6 | transposase B | phrog_296 | DNA transposition protein | integration and excision | 1 | 4101 | 4871 |
| AII21881.1 | JQ067085_p21 | hypothetical protein | phrog_4057 | unknown function | unknown function | 1 | 10643 | 10885 |
| AII21852.1 | JQ067085_p50 | Viron structural protein | phrog_778 | tail assembly protein | tail | 1 | 31270 | 32091 |
| AII21862.1 | JQ067085_p40 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 21647 | 22063 |
| AII21878.1 | JQ067085_p24 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 11394 | 11582 |
| AII21898.1 | JQ067085_p4 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 1845 | 2042 |
| AII21899.1 | JQ067085_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1411 | 1845 |
| AII21886.1 | JQ067085_p16 | GemA | phrog_286 | unknown function | unknown function | 1 | 8519 | 8920 |
| AII21891.1 | JQ067085_p11 | host nuclease inhibitor protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6320 | 6838 |
| AII21865.1 | JQ067085_p37 | major head subunit protein | phrog_371 | major head protein | head and packaging | 1 | 20187 | 21095 |
| AII21894.1 | JQ067085_p8 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 5500 | 5616 |
| AII21867.1 | JQ067085_p35 | protease (I) and scaffold (Z) protein | phrog_328 | head maturation protease | head and packaging | 1 | 18645 | 19751 |
| AII21883.1 | JQ067085_p19 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 9805 | 10227 |
| AII21875.1 | JQ067085_p27 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 12599 | 14254 |
| AII21857.1 | JQ067085_p45 | hypothetical protein | phrog_10839 | unknown function | unknown function | 1 | 23998 | 24126 |
| AII21869.1 | JQ067085_p33 | DNA-binding domain-containing protein | phrog_3865 | unknown function | unknown function | 1 | 18201 | 18425 |
| AII21890.1 | JQ067085_p12 | hypothetical protein | phrog_10427 | unknown function | unknown function | 1 | 6838 | 7041 |
| AII21895.1 | JQ067085_p7 | DNA-binding domain-containing protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 4868 | 5515 |
| AII21851.1 | JQ067085_p51 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32100 | 32339 |
| AII21854.1 | JQ067085_p48 | Virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 28654 | 29577 |
| AII21847.1 | JQ067085_p55 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 35893 | 36180 |
| AII21887.1 | JQ067085_p15 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 7945 | 8214 |
| AII21860.1 | JQ067085_p42 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 22527 | 22706 |
| AII21861.1 | JQ067085_p41 | Virion structural protein | phrog_209 | portal protein | head and packaging | 1 | 22060 | 22539 |
| AII21893.1 | JQ067085_p9 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 5616 | 6029 |
| AII21885.1 | JQ067085_p17 | Mor transcription activator | phrog_836 | late transcriptional activator | transcription regulation | 1 | 8913 | 9362 |
| AII21897.1 | JQ067085_p5 | transposase A | phrog_310 | transposase | integration and excision | 1 | 2035 | 4104 |
| AII21876.1 | JQ067085_p26 | hypothetical protein | phrog_1244 | unknown function | unknown function | -1 | 12094 | 12600 |
| AII21850.1 | JQ067085_p52 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 32336 | 32554 |
| AII21888.1 | JQ067085_p14 | hypothetical protein | phrog_5249 | unknown function | unknown function | 1 | 7487 | 7936 |
| AII21900.1 | JQ067085_p2 | Ner-like protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1052 | 1408 |
| AII21864.1 | JQ067085_p38 | hypothetical protein | phrog_7976 | unknown function | unknown function | 1 | 21110 | 21412 |
| AII21901.1 | JQ067085_p1 | repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 170 | 883 |
| AII21892.1 | JQ067085_p10 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 6019 | 6303 |
| AII21859.1 | JQ067085_p43 | Virion structural protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 22739 | 23509 |
| AII21846.1 | JQ067085_p56 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 36259 | 36483 |
| AII21863.1 | JQ067085_p39 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 21447 | 21650 |
| AII21856.1 | JQ067085_p46 | tail length tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 24123 | 27689 |
| AII21874.1 | JQ067085_p28 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 14266 | 15852 |
| AII21855.1 | JQ067085_p47 | Virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 27696 | 28652 |
| AII21853.1 | JQ067085_p49 | Virion structural protein | phrog_1082 | tail assembly protein | tail | 1 | 29577 | 31280 |
| AII21882.1 | JQ067085_p20 | hypothetical protein | phrog_873 | endolysin | head and packaging | 1 | 10227 | 10643 |