| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ692107 |
Definition |
Vibrio vulnificus phage SSP002, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mardecavirus; Vibrio virus SSP002. |
DB of origin |
PVOG |
Length |
76350 |
Host Name |
Vibrio vulnificus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
48.77 |
Number of singletons |
10 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE86337.1 | JQ692107_p10 | hypothetical protein | phrog_31012 | unknown function | unknown function | 1 | 3961 | 4260 |
| AFE86410.1 | JQ692107_p83 | hypothetical protein | phrog_33526 | unknown function | unknown function | 1 | 64446 | 65165 |
| AFE86395.1 | JQ692107_p68 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 51489 | 52340 |
| AFE86408.1 | JQ692107_p81 | hypothetical protein | phrog_4102 | terminase small subunit | head and packaging | 1 | 63100 | 63594 |
| AFE86351.1 | JQ692107_p24 | hypothetical protein | phrog_29118 | unknown function | unknown function | 1 | 10844 | 11242 |
| AFE86352.1 | JQ692107_p25 | hypothetical protein | phrog_19233 | unknown function | unknown function | 1 | 11377 | 11823 |
| AFE86367.1 | JQ692107_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23708 | 23956 |
| AFE86413.1 | JQ692107_p86 | hypothetical protein | phrog_27986 | unknown function | unknown function | 1 | 67400 | 67738 |
| AFE86375.1 | JQ692107_p48 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 31793 | 32038 |
| AFE86420.1 | JQ692107_p93 | hypothetical protein | phrog_35593 | unknown function | unknown function | 1 | 70427 | 70654 |
| AFE86374.1 | JQ692107_p47 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 31551 | 31793 |
| AFE86414.1 | JQ692107_p87 | hypothetical protein | phrog_32725 | unknown function | unknown function | 1 | 67768 | 68088 |
| AFE86354.1 | JQ692107_p27 | hypothetical protein | phrog_28710 | unknown function | unknown function | 1 | 12273 | 12923 |
| AFE86426.1 | JQ692107_p99 | hypothetical protein | phrog_7744 | unknown function | unknown function | 1 | 73724 | 73906 |
| AFE86425.1 | JQ692107_p98 | hypothetical protein | phrog_33167 | unknown function | unknown function | 1 | 72929 | 73708 |
| AFE86423.1 | JQ692107_p96 | hypothetical protein | phrog_34008 | unknown function | unknown function | 1 | 71723 | 72049 |
| AFE86368.1 | JQ692107_p41 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 23931 | 24386 |
| AFE86404.1 | JQ692107_p77 | DNA repair exonuclease | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58093 | 59082 |
| AFE86418.1 | JQ692107_p91 | hypothetical protein | phrog_32809 | unknown function | unknown function | 1 | 69542 | 70030 |
| AFE86356.1 | JQ692107_p29 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 13397 | 14701 |
| AFE86359.1 | JQ692107_p32 | structural protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 17451 | 18242 |
| AFE86329.1 | JQ692107_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1034 | 1330 |
| AFE86362.1 | JQ692107_p35 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 20207 | 20749 |
| AFE86357.1 | JQ692107_p30 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 14715 | 16283 |
| AFE86363.1 | JQ692107_p36 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 20762 | 21157 |
| AFE86342.1 | JQ692107_p15 | DNA ligase | phrog_2561 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6917 | 7405 |
| AFE86330.1 | JQ692107_p3 | hypothetical protein | phrog_35364 | unknown function | unknown function | 1 | 1332 | 1556 |
| AFE86402.1 | JQ692107_p75 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 56929 | 57456 |
| AFE86377.1 | JQ692107_p50 | hypothetical protein | phrog_29340 | unknown function | unknown function | 1 | 34633 | 35055 |
| AFE86331.1 | JQ692107_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1558 | 2226 |
| AFE86387.1 | JQ692107_p60 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 41699 | 43150 |
| AFE86416.1 | JQ692107_p89 | hypothetical protein | phrog_36123 | unknown function | unknown function | 1 | 68883 | 69035 |
| AFE86428.1 | JQ692107_p101 | hypothetical protein | phrog_38265 | unknown function | unknown function | 1 | 74131 | 74346 |
| AFE86332.1 | JQ692107_p5 | hypothetical protein | phrog_11725 | unknown function | unknown function | 1 | 2216 | 2413 |
| AFE86382.1 | JQ692107_p55 | hypothetical protein | phrog_11233 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 36923 | 37942 |
| AFE86364.1 | JQ692107_p37 | structural protein | phrog_179 | tail terminator | connector | 1 | 21154 | 21567 |
| AFE86353.1 | JQ692107_p26 | hypothetical protein | phrog_34201 | unknown function | unknown function | 1 | 11825 | 12280 |
| AFE86391.1 | JQ692107_p64 | hypothetical protein | phrog_38529 | unknown function | unknown function | 1 | 45925 | 47079 |
| AFE86379.1 | JQ692107_p52 | endolysin | singleton | unknown function | unknown function | 1 | 35484 | 35861 |
| AFE86340.1 | JQ692107_p13 | hypothetical protein | phrog_29093 | unknown function | unknown function | 1 | 5685 | 6299 |
| AFE86393.1 | JQ692107_p66 | DNA polymerase III beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 47722 | 48783 |
| AFE86407.1 | JQ692107_p80 | hypothetical protein | phrog_37613 | MazG-like pyrophosphatase | other | 1 | 61773 | 62957 |
| AFE86376.1 | JQ692107_p49 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 32019 | 34574 |
| AFE86369.1 | JQ692107_p42 | tail tape measure protein | phrog_32885 | tail length tape measure protein | tail | 1 | 24386 | 27232 |
| AFE86394.1 | JQ692107_p67 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 48786 | 51440 |
| AFE86333.1 | JQ692107_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2418 | 2945 |
| AFE86345.1 | JQ692107_p18 | hypothetical protein | phrog_36518 | unknown function | unknown function | 1 | 8210 | 8437 |
| AFE86415.1 | JQ692107_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68758 | 68886 |
| AFE86417.1 | JQ692107_p90 | hypothetical protein | phrog_29806 | unknown function | unknown function | 1 | 69136 | 69528 |
| AFE86380.1 | JQ692107_p53 | hypothetical protein | phrog_1152 | Rz-like spanin | lysis | 1 | 35917 | 36408 |
| AFE86389.1 | JQ692107_p62 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 43765 | 44820 |
| AFE86336.1 | JQ692107_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3604 | 3951 |
| AFE86397.1 | JQ692107_p70 | hypothetical protein | phrog_1069 | unknown function | unknown function | 1 | 53294 | 53785 |
| AFE86355.1 | JQ692107_p28 | HNH endonuclease | phrog_33554 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13033 | 13377 |
| AFE86350.1 | JQ692107_p23 | hypothetical protein | phrog_799 | DNA methyltransferase | other | 1 | 10186 | 10839 |
| AFE86422.1 | JQ692107_p95 | hypothetical protein | phrog_34003 | unknown function | unknown function | 1 | 71415 | 71693 |
| AFE86406.1 | JQ692107_p79 | hypothetical protein | phrog_34362 | unknown function | unknown function | 1 | 60931 | 61548 |
| AFE86396.1 | JQ692107_p69 | DNA polymerase III subunit gamma and tau | phrog_5846 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 52355 | 53290 |
| AFE86373.1 | JQ692107_p46 | tail assembly protein | phrog_778 | tail assembly protein | tail | 1 | 30724 | 31530 |
| AFE86358.1 | JQ692107_p31 | head morphogenesis domain protein | phrog_241 | head morphogenesis | head and packaging | 1 | 16287 | 17405 |
| AFE86348.1 | JQ692107_p21 | hypothetical protein | phrog_31906 | unknown function | unknown function | 1 | 9515 | 9847 |
| AFE86384.1 | JQ692107_p57 | hypothetical protein | phrog_29221 | unknown function | unknown function | 1 | 38767 | 39189 |
| AFE86370.1 | JQ692107_p43 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 27235 | 28062 |
| AFE86360.1 | JQ692107_p33 | hypothetical protein | phrog_283 | major head protein | head and packaging | 1 | 18449 | 19576 |
| AFE86412.1 | JQ692107_p85 | hypothetical protein | phrog_30538 | unknown function | unknown function | 1 | 66945 | 67406 |
| AFE86378.1 | JQ692107_p51 | hypothetical protein | phrog_37365 | unknown function | unknown function | 1 | 35033 | 35347 |
| AFE86366.1 | JQ692107_p39 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 23112 | 23564 |
| AFE86399.1 | JQ692107_p72 | hypothetical protein | phrog_34306 | unknown function | unknown function | 1 | 53930 | 55069 |
| AFE86361.1 | JQ692107_p34 | hypothetical protein | phrog_32242 | unknown function | unknown function | 1 | 19652 | 20122 |
| AFE86403.1 | JQ692107_p76 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 57506 | 58096 |
| AFE86349.1 | JQ692107_p22 | hypothetical protein | phrog_31498 | unknown function | unknown function | 1 | 9879 | 10175 |
| AFE86419.1 | JQ692107_p92 | hypothetical protein | phrog_38790 | unknown function | unknown function | 1 | 70033 | 70437 |
| AFE86339.1 | JQ692107_p12 | hypothetical protein | phrog_30130 | unknown function | unknown function | 1 | 4815 | 5597 |
| AFE86427.1 | JQ692107_p100 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73908 | 74129 |
| AFE86424.1 | JQ692107_p97 | hypothetical protein | phrog_18238 | unknown function | unknown function | 1 | 72095 | 72535 |
| AFE86390.1 | JQ692107_p63 | hypothetical protein | phrog_35491 | unknown function | unknown function | 1 | 45236 | 45853 |
| AFE86392.1 | JQ692107_p65 | hypothetical protein | phrog_34242 | unknown function | unknown function | 1 | 47158 | 47559 |
| AFE86405.1 | JQ692107_p78 | exonuclease | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59082 | 60929 |
| AFE86346.1 | JQ692107_p19 | transcriptional regulator | phrog_13512 | transcriptional regulator | transcription regulation | 1 | 8542 | 9090 |
| AFE86365.1 | JQ692107_p38 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 21579 | 23021 |
| AFE86343.1 | JQ692107_p16 | hypothetical protein | phrog_30691 | unknown function | unknown function | 1 | 7510 | 7992 |
| AFE86335.1 | JQ692107_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3332 | 3607 |
| AFE86341.1 | JQ692107_p14 | hypothetical protein | phrog_31817 | unknown function | unknown function | 1 | 6345 | 6917 |
| AFE86421.1 | JQ692107_p94 | hypothetical protein | phrog_28163 | unknown function | unknown function | 1 | 70668 | 71045 |
| AFE86371.1 | JQ692107_p44 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28062 | 29054 |
| AFE86344.1 | JQ692107_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7989 | 8210 |
| AFE86398.1 | JQ692107_p71 | hypothetical protein | phrog_35953 | unknown function | unknown function | 1 | 53787 | 53927 |
| AFE86347.1 | JQ692107_p20 | hypothetical protein | phrog_33329 | unknown function | unknown function | 1 | 9118 | 9447 |
| AFE86383.1 | JQ692107_p56 | Ist ATP-binding domain-containing protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 37947 | 38783 |
| AFE86411.1 | JQ692107_p84 | hypothetical protein | phrog_32069 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 65699 | 66745 |
| AFE86386.1 | JQ692107_p59 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 40027 | 41637 |
| AFE86409.1 | JQ692107_p82 | hypothetical protein | phrog_7203 | unknown function | unknown function | 1 | 63687 | 64373 |
| AFE86388.1 | JQ692107_p61 | hypothetical protein | phrog_631 | unknown function | unknown function | 1 | 43151 | 43768 |
| AFE86401.1 | JQ692107_p74 | RecA protein | phrog_97 | UvsX-like recombinase | other | 1 | 55812 | 56915 |
| AFE86400.1 | JQ692107_p73 | thymidylate kinase | phrog_761 | thymidylate kinase | other | 1 | 55149 | 55784 |
| AFE86334.1 | JQ692107_p7 | hypothetical protein | phrog_38763 | unknown function | unknown function | 1 | 2950 | 3330 |
| AFE86429.1 | JQ692107_p102 | hypothetical protein | phrog_29658 | unknown function | unknown function | 1 | 74402 | 74905 |
| AFE86372.1 | JQ692107_p45 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 29051 | 30724 |
| AFE86338.1 | JQ692107_p11 | hypothetical protein | phrog_34538 | unknown function | unknown function | 1 | 4312 | 4815 |
| AFE86328.1 | JQ692107_p1 | hypothetical protein | phrog_3377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 393 | 959 |
| AFE86381.1 | JQ692107_p54 | hypothetical protein | phrog_30562 | unknown function | unknown function | 1 | 36603 | 36920 |
| AFE86385.1 | JQ692107_p58 | DNA polymerase I | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39173 | 40027 |