Genomic map of Vibrio phage SSP002 (JQ692107)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JQ692107
Definition
Vibrio vulnificus phage SSP002, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mardecavirus; Vibrio virus SSP002.
DB of origin
PVOG
Length
76350
Host Name
Vibrio vulnificus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
48.77
Number of singletons
10
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFE86337.1 JQ692107_p10 hypothetical protein phrog_31012 unknown function unknown function 1 3961 4260
AFE86410.1 JQ692107_p83 hypothetical protein phrog_33526 unknown function unknown function 1 64446 65165
AFE86395.1 JQ692107_p68 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 51489 52340
AFE86408.1 JQ692107_p81 hypothetical protein phrog_4102 terminase small subunit head and packaging 1 63100 63594
AFE86351.1 JQ692107_p24 hypothetical protein phrog_29118 unknown function unknown function 1 10844 11242
AFE86352.1 JQ692107_p25 hypothetical protein phrog_19233 unknown function unknown function 1 11377 11823
AFE86367.1 JQ692107_p40 hypothetical protein singleton unknown function unknown function 1 23708 23956
AFE86413.1 JQ692107_p86 hypothetical protein phrog_27986 unknown function unknown function 1 67400 67738
AFE86375.1 JQ692107_p48 hypothetical protein phrog_1196 tail assembly chaperone tail 1 31793 32038
AFE86420.1 JQ692107_p93 hypothetical protein phrog_35593 unknown function unknown function 1 70427 70654
AFE86374.1 JQ692107_p47 hypothetical protein phrog_1180 tail assembly chaperone tail 1 31551 31793
AFE86414.1 JQ692107_p87 hypothetical protein phrog_32725 unknown function unknown function 1 67768 68088
AFE86354.1 JQ692107_p27 hypothetical protein phrog_28710 unknown function unknown function 1 12273 12923
AFE86426.1 JQ692107_p99 hypothetical protein phrog_7744 unknown function unknown function 1 73724 73906
AFE86425.1 JQ692107_p98 hypothetical protein phrog_33167 unknown function unknown function 1 72929 73708
AFE86423.1 JQ692107_p96 hypothetical protein phrog_34008 unknown function unknown function 1 71723 72049
AFE86368.1 JQ692107_p41 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 23931 24386
AFE86404.1 JQ692107_p77 DNA repair exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 58093 59082
AFE86418.1 JQ692107_p91 hypothetical protein phrog_32809 unknown function unknown function 1 69542 70030
AFE86356.1 JQ692107_p29 terminase large subunit phrog_2 terminase large subunit head and packaging 1 13397 14701
AFE86359.1 JQ692107_p32 structural protein phrog_206 head scaffolding protein head and packaging 1 17451 18242
AFE86329.1 JQ692107_p2 hypothetical protein singleton unknown function unknown function 1 1034 1330
AFE86362.1 JQ692107_p35 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 20207 20749
AFE86357.1 JQ692107_p30 structural protein phrog_145 portal protein head and packaging 1 14715 16283
AFE86363.1 JQ692107_p36 hypothetical protein phrog_161 head closure Hc1 connector 1 20762 21157
AFE86342.1 JQ692107_p15 DNA ligase phrog_2561 DNA ligase DNA, RNA and nucleotide metabolism 1 6917 7405
AFE86330.1 JQ692107_p3 hypothetical protein phrog_35364 unknown function unknown function 1 1332 1556
AFE86402.1 JQ692107_p75 hypothetical protein phrog_419 unknown function unknown function 1 56929 57456
AFE86377.1 JQ692107_p50 hypothetical protein phrog_29340 unknown function unknown function 1 34633 35055
AFE86331.1 JQ692107_p4 hypothetical protein singleton unknown function unknown function 1 1558 2226
AFE86387.1 JQ692107_p60 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 41699 43150
AFE86416.1 JQ692107_p89 hypothetical protein phrog_36123 unknown function unknown function 1 68883 69035
AFE86428.1 JQ692107_p101 hypothetical protein phrog_38265 unknown function unknown function 1 74131 74346
AFE86332.1 JQ692107_p5 hypothetical protein phrog_11725 unknown function unknown function 1 2216 2413
AFE86382.1 JQ692107_p55 hypothetical protein phrog_11233 replication initiation protein DNA, RNA and nucleotide metabolism 1 36923 37942
AFE86364.1 JQ692107_p37 structural protein phrog_179 tail terminator connector 1 21154 21567
AFE86353.1 JQ692107_p26 hypothetical protein phrog_34201 unknown function unknown function 1 11825 12280
AFE86391.1 JQ692107_p64 hypothetical protein phrog_38529 unknown function unknown function 1 45925 47079
AFE86379.1 JQ692107_p52 endolysin singleton unknown function unknown function 1 35484 35861
AFE86340.1 JQ692107_p13 hypothetical protein phrog_29093 unknown function unknown function 1 5685 6299
AFE86393.1 JQ692107_p66 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 47722 48783
AFE86407.1 JQ692107_p80 hypothetical protein phrog_37613 MazG-like pyrophosphatase other 1 61773 62957
AFE86376.1 JQ692107_p49 hypothetical protein phrog_1101 tail protein tail 1 32019 34574
AFE86369.1 JQ692107_p42 tail tape measure protein phrog_32885 tail length tape measure protein tail 1 24386 27232
AFE86394.1 JQ692107_p67 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 48786 51440
AFE86333.1 JQ692107_p6 hypothetical protein singleton unknown function unknown function 1 2418 2945
AFE86345.1 JQ692107_p18 hypothetical protein phrog_36518 unknown function unknown function 1 8210 8437
AFE86415.1 JQ692107_p88 hypothetical protein singleton unknown function unknown function 1 68758 68886
AFE86417.1 JQ692107_p90 hypothetical protein phrog_29806 unknown function unknown function 1 69136 69528
AFE86380.1 JQ692107_p53 hypothetical protein phrog_1152 Rz-like spanin lysis 1 35917 36408
AFE86389.1 JQ692107_p62 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 43765 44820
AFE86336.1 JQ692107_p9 hypothetical protein singleton unknown function unknown function 1 3604 3951
AFE86397.1 JQ692107_p70 hypothetical protein phrog_1069 unknown function unknown function 1 53294 53785
AFE86355.1 JQ692107_p28 HNH endonuclease phrog_33554 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13033 13377
AFE86350.1 JQ692107_p23 hypothetical protein phrog_799 DNA methyltransferase other 1 10186 10839
AFE86422.1 JQ692107_p95 hypothetical protein phrog_34003 unknown function unknown function 1 71415 71693
AFE86406.1 JQ692107_p79 hypothetical protein phrog_34362 unknown function unknown function 1 60931 61548
AFE86396.1 JQ692107_p69 DNA polymerase III subunit gamma and tau phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 52355 53290
AFE86373.1 JQ692107_p46 tail assembly protein phrog_778 tail assembly protein tail 1 30724 31530
AFE86358.1 JQ692107_p31 head morphogenesis domain protein phrog_241 head morphogenesis head and packaging 1 16287 17405
AFE86348.1 JQ692107_p21 hypothetical protein phrog_31906 unknown function unknown function 1 9515 9847
AFE86384.1 JQ692107_p57 hypothetical protein phrog_29221 unknown function unknown function 1 38767 39189
AFE86370.1 JQ692107_p43 hypothetical protein phrog_687 structural protein head and packaging 1 27235 28062
AFE86360.1 JQ692107_p33 hypothetical protein phrog_283 major head protein head and packaging 1 18449 19576
AFE86412.1 JQ692107_p85 hypothetical protein phrog_30538 unknown function unknown function 1 66945 67406
AFE86378.1 JQ692107_p51 hypothetical protein phrog_37365 unknown function unknown function 1 35033 35347
AFE86366.1 JQ692107_p39 hypothetical protein phrog_313 Tail assembly chaperone tail 1 23112 23564
AFE86399.1 JQ692107_p72 hypothetical protein phrog_34306 unknown function unknown function 1 53930 55069
AFE86361.1 JQ692107_p34 hypothetical protein phrog_32242 unknown function unknown function 1 19652 20122
AFE86403.1 JQ692107_p76 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 57506 58096
AFE86349.1 JQ692107_p22 hypothetical protein phrog_31498 unknown function unknown function 1 9879 10175
AFE86419.1 JQ692107_p92 hypothetical protein phrog_38790 unknown function unknown function 1 70033 70437
AFE86339.1 JQ692107_p12 hypothetical protein phrog_30130 unknown function unknown function 1 4815 5597
AFE86427.1 JQ692107_p100 hypothetical protein singleton unknown function unknown function 1 73908 74129
AFE86424.1 JQ692107_p97 hypothetical protein phrog_18238 unknown function unknown function 1 72095 72535
AFE86390.1 JQ692107_p63 hypothetical protein phrog_35491 unknown function unknown function 1 45236 45853
AFE86392.1 JQ692107_p65 hypothetical protein phrog_34242 unknown function unknown function 1 47158 47559
AFE86405.1 JQ692107_p78 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 59082 60929
AFE86346.1 JQ692107_p19 transcriptional regulator phrog_13512 transcriptional regulator transcription regulation 1 8542 9090
AFE86365.1 JQ692107_p38 hypothetical protein phrog_290 minor tail protein tail 1 21579 23021
AFE86343.1 JQ692107_p16 hypothetical protein phrog_30691 unknown function unknown function 1 7510 7992
AFE86335.1 JQ692107_p8 hypothetical protein singleton unknown function unknown function 1 3332 3607
AFE86341.1 JQ692107_p14 hypothetical protein phrog_31817 unknown function unknown function 1 6345 6917
AFE86421.1 JQ692107_p94 hypothetical protein phrog_28163 unknown function unknown function 1 70668 71045
AFE86371.1 JQ692107_p44 hypothetical protein phrog_687 structural protein head and packaging 1 28062 29054
AFE86344.1 JQ692107_p17 hypothetical protein singleton unknown function unknown function 1 7989 8210
AFE86398.1 JQ692107_p71 hypothetical protein phrog_35953 unknown function unknown function 1 53787 53927
AFE86347.1 JQ692107_p20 hypothetical protein phrog_33329 unknown function unknown function 1 9118 9447
AFE86383.1 JQ692107_p56 Ist ATP-binding domain-containing protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 37947 38783
AFE86411.1 JQ692107_p84 hypothetical protein phrog_32069 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 65699 66745
AFE86386.1 JQ692107_p59 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 40027 41637
AFE86409.1 JQ692107_p82 hypothetical protein phrog_7203 unknown function unknown function 1 63687 64373
AFE86388.1 JQ692107_p61 hypothetical protein phrog_631 unknown function unknown function 1 43151 43768
AFE86401.1 JQ692107_p74 RecA protein phrog_97 UvsX-like recombinase other 1 55812 56915
AFE86400.1 JQ692107_p73 thymidylate kinase phrog_761 thymidylate kinase other 1 55149 55784
AFE86334.1 JQ692107_p7 hypothetical protein phrog_38763 unknown function unknown function 1 2950 3330
AFE86429.1 JQ692107_p102 hypothetical protein phrog_29658 unknown function unknown function 1 74402 74905
AFE86372.1 JQ692107_p45 hypothetical protein phrog_1082 tail assembly protein tail 1 29051 30724
AFE86338.1 JQ692107_p11 hypothetical protein phrog_34538 unknown function unknown function 1 4312 4815
AFE86328.1 JQ692107_p1 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism 1 393 959
AFE86381.1 JQ692107_p54 hypothetical protein phrog_30562 unknown function unknown function 1 36603 36920
AFE86385.1 JQ692107_p58 DNA polymerase I phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 39173 40027