| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ698665 |
Definition |
Mycobacterium phage Nepal, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
PVOG |
Length |
53972 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
63.54 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFL46573.1 | JQ698665_p81 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 48238 | 48642 |
| AFL46593.1 | JQ698665_p41 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31800 | 31979 |
| AFL46594.1 | JQ698665_p42 | RDF protein | phrog_1860 | unknown function | unknown function | -1 | 31967 | 32062 |
| AFL46587.1 | JQ698665_p96 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 52474 | 52680 |
| AFL46537.1 | JQ698665_p34 | structural protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26304 | 27782 |
| AFL46586.1 | JQ698665_p95 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 52151 | 52390 |
| AFL46558.1 | JQ698665_p64 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42836 | 42922 |
| AFL46580.1 | JQ698665_p88 | RDF protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 50571 | 50771 |
| AFL46519.1 | JQ698665_p16 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11405 | 11917 |
| AFL46550.1 | JQ698665_p52 | RDF protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36851 | 38569 |
| AFL46559.1 | JQ698665_p65 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42919 | 43188 |
| AFL46583.1 | JQ698665_p92 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 51438 | 51785 |
| AFL46525.1 | JQ698665_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14457 | 14903 |
| AFL46556.1 | JQ698665_p62 | DNA methylase/helicase | phrog_67 | DNA methyltransferase | other | -1 | 41132 | 42358 |
| AFL46582.1 | JQ698665_p90 | hypothetical protein | phrog_8345 | unknown function | unknown function | -1 | 50959 | 51195 |
| AFL46527.1 | JQ698665_p24 | hypothetical protein | phrog_330 | tail assembly chaperone | tail | 1 | 15823 | 16263 |
| AFL46584.1 | JQ698665_p93 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 51785 | 52003 |
| AFL46605.1 | JQ698665_p99 | hypothetical protein | phrog_13308 | unknown function | unknown function | -1 | 53294 | 53674 |
| AFL46597.1 | JQ698665_p56 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39463 | 39987 |
| AFL46551.1 | JQ698665_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38566 | 38745 |
| AFL46513.1 | JQ698665_p10 | lysozyme | phrog_317 | endolysin | lysis | 1 | 4721 | 6148 |
| AFL46549.1 | JQ698665_p51 | RDF protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36706 | 36876 |
| AFL46599.1 | JQ698665_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40011 | 40256 |
| AFL46557.1 | JQ698665_p63 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 42355 | 42849 |
| AFL46544.1 | JQ698665_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32343 | 32702 |
| AFL46576.1 | JQ698665_p84 | RDF protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 49741 | 49920 |
| AFL46567.1 | JQ698665_p74 | hypothetical protein | phrog_13492 | unknown function | unknown function | -1 | 46202 | 46453 |
| AFL46596.1 | JQ698665_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35012 | 35242 |
| AFL46575.1 | JQ698665_p83 | RDF protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49449 | 49748 |
| AFL46590.1 | JQ698665_p5 | hypothetical protein | phrog_4371 | unknown function | unknown function | 1 | 2101 | 2385 |
| AFL46546.1 | JQ698665_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35273 | 35752 |
| AFL46534.1 | JQ698665_p31 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23742 | 24089 |
| AFL46606.1 | JQ698665_p100 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53744 | 53962 |
| AFL46535.1 | JQ698665_p32 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24086 | 24433 |
| AFL46562.1 | JQ698665_p68 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 44176 | 44307 |
| AFL46508.1 | JQ698665_p3 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1533 | 1844 |
| AFL46518.1 | JQ698665_p15 | protease | phrog_193 | head maturation protease | head and packaging | 1 | 10466 | 11347 |
| AFL46533.1 | JQ698665_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23299 | 23745 |
| AFL46523.1 | JQ698665_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13696 | 14058 |
| AFL46571.1 | JQ698665_p79 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 47610 | 47927 |
| AFL46516.1 | JQ698665_p13 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7342 | 9030 |
| AFL46507.1 | JQ698665_p2 | tail protein | phrog_226 | minor tail protein | tail | 1 | 927 | 1361 |
| AFL46517.1 | JQ698665_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9027 | 10469 |
| AFL46547.1 | JQ698665_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35749 | 35931 |
| AFL46598.1 | JQ698665_p58 | hypothetical protein | phrog_4160 | unknown function | unknown function | -1 | 40303 | 40767 |
| AFL46588.1 | JQ698665_p98 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 52915 | 53181 |
| AFL46603.1 | JQ698665_p91 | hypothetical protein | phrog_17684 | unknown function | unknown function | -1 | 51227 | 51340 |
| AFL46574.1 | JQ698665_p82 | repressor protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 48675 | 49361 |
| AFL46530.1 | JQ698665_p27 | tail protein | phrog_106 | minor tail protein | tail | 1 | 19201 | 21258 |
| AFL46578.1 | JQ698665_p86 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 50183 | 50386 |
| AFL46595.1 | JQ698665_p45 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32725 | 33210 |
| AFL46539.1 | JQ698665_p36 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28205 | 28396 |
| AFL46589.1 | JQ698665_p4 | hypothetical protein | phrog_26323 | unknown function | unknown function | 1 | 1819 | 2073 |
| AFL46560.1 | JQ698665_p66 | DNA B-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43185 | 44006 |
| AFL46529.1 | JQ698665_p26 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16697 | 19177 |
| AFL46570.1 | JQ698665_p77 | hypothetical protein | phrog_11473 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 46914 | 47396 |
| AFL46579.1 | JQ698665_p87 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 50383 | 50571 |
| AFL46585.1 | JQ698665_p94 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 52000 | 52119 |
| AFL46568.1 | JQ698665_p75 | hypothetical protein | phrog_12594 | unknown function | unknown function | -1 | 46450 | 46617 |
| AFL46509.1 | JQ698665_p6 | tail fiber-like protein | phrog_1197 | tail protein | tail | 1 | 2401 | 3471 |
| AFL46561.1 | JQ698665_p67 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 44006 | 44179 |
| AFL46543.1 | JQ698665_p43 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32059 | 32346 |
| AFL46515.1 | JQ698665_p12 | lysin B | phrog_102 | endolysin | lysis | 1 | 6354 | 7322 |
| AFL46548.1 | JQ698665_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35928 | 36713 |
| AFL46563.1 | JQ698665_p70 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44579 | 44899 |
| AFL46538.1 | JQ698665_p35 | Mul-like protein | phrog_644 | unknown function | unknown function | 1 | 27875 | 28195 |
| AFL46555.1 | JQ698665_p61 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40972 | 41106 |
| AFL46566.1 | JQ698665_p73 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45402 | 46205 |
| AFL46511.1 | JQ698665_p8 | structural protein | phrog_1718 | tail protein | tail | 1 | 4196 | 4456 |
| AFL46520.1 | JQ698665_p17 | structural protein | phrog_10 | major head protein | head and packaging | 1 | 11927 | 12925 |
| AFL46554.1 | JQ698665_p59 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40746 | 40910 |
| AFL46540.1 | JQ698665_p37 | structural protein | phrog_754 | minor tail protein | tail | 1 | 28393 | 29352 |
| AFL46531.1 | JQ698665_p28 | RDF protein | phrog_1543 | minor tail protein | tail | 1 | 21277 | 21459 |
| AFL46528.1 | JQ698665_p25 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | 1 | 16314 | 16685 |
| AFL46565.1 | JQ698665_p72 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 45193 | 45375 |
| AFL46601.1 | JQ698665_p78 | hypothetical protein | phrog_14169 | zinc-finger domain protein | other | -1 | 47386 | 47613 |
| AFL46602.1 | JQ698665_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40910 | 40984 |
| AFL46506.1 | JQ698665_p1 | WhiB/HNH protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 533 | 892 |
| AFL46569.1 | JQ698665_p76 | hypothetical protein | phrog_12774 | unknown function | unknown function | -1 | 46629 | 46901 |
| AFL46524.1 | JQ698665_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14058 | 14453 |
| AFL46600.1 | JQ698665_p69 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 44304 | 44582 |
| AFL46536.1 | JQ698665_p33 | structural protein | phrog_346 | minor tail protein | tail | 1 | 24458 | 26311 |
| AFL46591.1 | JQ698665_p39 | integrase | phrog_95 | integrase | integration and excision | 1 | 29820 | 31412 |
| AFL46564.1 | JQ698665_p71 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44869 | 45189 |
| AFL46577.1 | JQ698665_p85 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 49917 | 50186 |
| AFL46510.1 | JQ698665_p7 | structural protein | phrog_553 | minor tail protein | tail | 1 | 3481 | 4182 |
| AFL46541.1 | JQ698665_p38 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29473 | 29757 |
| AFL46532.1 | JQ698665_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21459 | 23261 |
| AFL46572.1 | JQ698665_p80 | hypothetical protein | phrog_3851 | unknown function | unknown function | -1 | 47924 | 48241 |
| AFL46553.1 | JQ698665_p55 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 39140 | 39466 |
| AFL46526.1 | JQ698665_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14912 | 15763 |
| AFL46521.1 | JQ698665_p18 | structural protein | phrog_1857 | head-tail connector protein | connector | 1 | 13011 | 13247 |
| AFL46514.1 | JQ698665_p11 | hypothetical protein | phrog_21042 | unknown function | unknown function | 1 | 6118 | 6354 |
| AFL46545.1 | JQ698665_p46 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33188 | 34975 |
| AFL46522.1 | JQ698665_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13247 | 13696 |
| AFL46542.1 | JQ698665_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31534 | 31803 |
| AFL46512.1 | JQ698665_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4464 | 4721 |
| AFL46552.1 | JQ698665_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38742 | 39143 |
| AFL46604.1 | JQ698665_p97 | hypothetical protein | phrog_37678 | unknown function | unknown function | -1 | 52622 | 52912 |
| AFL46581.1 | JQ698665_p89 | hypothetical protein | phrog_11336 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 50768 | 50962 |