Genomic map of Mycobacterium virus Nepal (JQ698665)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JQ698665
Definition
Mycobacterium phage Nepal, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
PVOG
Length
53972
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
100
%GC
63.54
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFL46573.1 JQ698665_p81 hypothetical protein phrog_1809 unknown function unknown function -1 48238 48642
AFL46593.1 JQ698665_p41 hypothetical protein phrog_2035 unknown function unknown function -1 31800 31979
AFL46594.1 JQ698665_p42 RDF protein phrog_1860 unknown function unknown function -1 31967 32062
AFL46587.1 JQ698665_p96 hypothetical protein phrog_828 unknown function unknown function 1 52474 52680
AFL46537.1 JQ698665_p34 structural protein phrog_382 minor tail protein with lysin activity tail 1 26304 27782
AFL46586.1 JQ698665_p95 hypothetical protein phrog_2985 unknown function unknown function 1 52151 52390
AFL46558.1 JQ698665_p64 hypothetical protein phrog_1019 unknown function unknown function -1 42836 42922
AFL46580.1 JQ698665_p88 RDF protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 50571 50771
AFL46519.1 JQ698665_p16 scaffold protein phrog_233 head scaffolding protein head and packaging 1 11405 11917
AFL46550.1 JQ698665_p52 RDF protein phrog_221 metallo-phosphoesterase other -1 36851 38569
AFL46559.1 JQ698665_p65 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42919 43188
AFL46583.1 JQ698665_p92 hypothetical protein phrog_5017 unknown function unknown function -1 51438 51785
AFL46525.1 JQ698665_p22 hypothetical protein phrog_123 tail terminator connector 1 14457 14903
AFL46556.1 JQ698665_p62 DNA methylase/helicase phrog_67 DNA methyltransferase other -1 41132 42358
AFL46582.1 JQ698665_p90 hypothetical protein phrog_8345 unknown function unknown function -1 50959 51195
AFL46527.1 JQ698665_p24 hypothetical protein phrog_330 tail assembly chaperone tail 1 15823 16263
AFL46584.1 JQ698665_p93 hypothetical protein phrog_5533 unknown function unknown function -1 51785 52003
AFL46605.1 JQ698665_p99 hypothetical protein phrog_13308 unknown function unknown function -1 53294 53674
AFL46597.1 JQ698665_p56 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39463 39987
AFL46551.1 JQ698665_p53 hypothetical protein phrog_1503 unknown function unknown function -1 38566 38745
AFL46513.1 JQ698665_p10 lysozyme phrog_317 endolysin lysis 1 4721 6148
AFL46549.1 JQ698665_p51 RDF protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36706 36876
AFL46599.1 JQ698665_p57 hypothetical protein singleton unknown function unknown function -1 40011 40256
AFL46557.1 JQ698665_p63 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 42355 42849
AFL46544.1 JQ698665_p44 hypothetical protein phrog_383 unknown function unknown function -1 32343 32702
AFL46576.1 JQ698665_p84 RDF protein phrog_6474 recombination directionality factor integration and excision -1 49741 49920
AFL46567.1 JQ698665_p74 hypothetical protein phrog_13492 unknown function unknown function -1 46202 46453
AFL46596.1 JQ698665_p47 hypothetical protein phrog_1781 unknown function unknown function -1 35012 35242
AFL46575.1 JQ698665_p83 RDF protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 49449 49748
AFL46590.1 JQ698665_p5 hypothetical protein phrog_4371 unknown function unknown function 1 2101 2385
AFL46546.1 JQ698665_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35273 35752
AFL46534.1 JQ698665_p31 hypothetical protein phrog_981 minor tail protein tail 1 23742 24089
AFL46606.1 JQ698665_p100 hypothetical protein singleton unknown function unknown function 1 53744 53962
AFL46535.1 JQ698665_p32 hypothetical protein phrog_1397 unknown function unknown function 1 24086 24433
AFL46562.1 JQ698665_p68 hypothetical protein phrog_1705 unknown function unknown function -1 44176 44307
AFL46508.1 JQ698665_p3 hypothetical protein phrog_2830 unknown function unknown function 1 1533 1844
AFL46518.1 JQ698665_p15 protease phrog_193 head maturation protease head and packaging 1 10466 11347
AFL46533.1 JQ698665_p30 hypothetical protein phrog_352 minor tail protein tail 1 23299 23745
AFL46523.1 JQ698665_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 13696 14058
AFL46571.1 JQ698665_p79 hypothetical protein phrog_1584 unknown function unknown function -1 47610 47927
AFL46516.1 JQ698665_p13 terminase phrog_9 terminase large subunit head and packaging 1 7342 9030
AFL46507.1 JQ698665_p2 tail protein phrog_226 minor tail protein tail 1 927 1361
AFL46517.1 JQ698665_p14 portal protein phrog_104 portal protein head and packaging 1 9027 10469
AFL46547.1 JQ698665_p49 hypothetical protein phrog_499 unknown function unknown function -1 35749 35931
AFL46598.1 JQ698665_p58 hypothetical protein phrog_4160 unknown function unknown function -1 40303 40767
AFL46588.1 JQ698665_p98 hypothetical protein phrog_3574 unknown function unknown function 1 52915 53181
AFL46603.1 JQ698665_p91 hypothetical protein phrog_17684 unknown function unknown function -1 51227 51340
AFL46574.1 JQ698665_p82 repressor protein phrog_357 transcriptional repressor transcription regulation -1 48675 49361
AFL46530.1 JQ698665_p27 tail protein phrog_106 minor tail protein tail 1 19201 21258
AFL46578.1 JQ698665_p86 hypothetical protein phrog_1387 unknown function unknown function -1 50183 50386
AFL46595.1 JQ698665_p45 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 32725 33210
AFL46539.1 JQ698665_p36 hypothetical protein phrog_1560 unknown function unknown function 1 28205 28396
AFL46589.1 JQ698665_p4 hypothetical protein phrog_26323 unknown function unknown function 1 1819 2073
AFL46560.1 JQ698665_p66 DNA B-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 43185 44006
AFL46529.1 JQ698665_p26 tapemeasure protein phrog_305 tail length tape measure protein tail 1 16697 19177
AFL46570.1 JQ698665_p77 hypothetical protein phrog_11473 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 46914 47396
AFL46579.1 JQ698665_p87 hypothetical protein phrog_1155 unknown function unknown function -1 50383 50571
AFL46585.1 JQ698665_p94 hypothetical protein phrog_2212 unknown function unknown function -1 52000 52119
AFL46568.1 JQ698665_p75 hypothetical protein phrog_12594 unknown function unknown function -1 46450 46617
AFL46509.1 JQ698665_p6 tail fiber-like protein phrog_1197 tail protein tail 1 2401 3471
AFL46561.1 JQ698665_p67 hypothetical protein phrog_2507 unknown function unknown function -1 44006 44179
AFL46543.1 JQ698665_p43 hypothetical protein phrog_1971 unknown function unknown function -1 32059 32346
AFL46515.1 JQ698665_p12 lysin B phrog_102 endolysin lysis 1 6354 7322
AFL46548.1 JQ698665_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35928 36713
AFL46563.1 JQ698665_p70 hypothetical protein phrog_520 unknown function unknown function -1 44579 44899
AFL46538.1 JQ698665_p35 Mul-like protein phrog_644 unknown function unknown function 1 27875 28195
AFL46555.1 JQ698665_p61 hypothetical protein phrog_397 unknown function unknown function -1 40972 41106
AFL46566.1 JQ698665_p73 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 45402 46205
AFL46511.1 JQ698665_p8 structural protein phrog_1718 tail protein tail 1 4196 4456
AFL46520.1 JQ698665_p17 structural protein phrog_10 major head protein head and packaging 1 11927 12925
AFL46554.1 JQ698665_p59 hypothetical protein phrog_1783 unknown function unknown function -1 40746 40910
AFL46540.1 JQ698665_p37 structural protein phrog_754 minor tail protein tail 1 28393 29352
AFL46531.1 JQ698665_p28 RDF protein phrog_1543 minor tail protein tail 1 21277 21459
AFL46528.1 JQ698665_p25 hypothetical protein phrog_3656 tail assembly chaperone tail 1 16314 16685
AFL46565.1 JQ698665_p72 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 45193 45375
AFL46601.1 JQ698665_p78 hypothetical protein phrog_14169 zinc-finger domain protein other -1 47386 47613
AFL46602.1 JQ698665_p60 hypothetical protein singleton unknown function unknown function -1 40910 40984
AFL46506.1 JQ698665_p1 WhiB/HNH protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 533 892
AFL46569.1 JQ698665_p76 hypothetical protein phrog_12774 unknown function unknown function -1 46629 46901
AFL46524.1 JQ698665_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14058 14453
AFL46600.1 JQ698665_p69 hypothetical protein phrog_780 unknown function unknown function -1 44304 44582
AFL46536.1 JQ698665_p33 structural protein phrog_346 minor tail protein tail 1 24458 26311
AFL46591.1 JQ698665_p39 integrase phrog_95 integrase integration and excision 1 29820 31412
AFL46564.1 JQ698665_p71 hypothetical protein phrog_2184 unknown function unknown function -1 44869 45189
AFL46577.1 JQ698665_p85 hypothetical protein phrog_1720 unknown function unknown function -1 49917 50186
AFL46510.1 JQ698665_p7 structural protein phrog_553 minor tail protein tail 1 3481 4182
AFL46541.1 JQ698665_p38 hypothetical protein phrog_411 unknown function unknown function 1 29473 29757
AFL46532.1 JQ698665_p29 minor tail protein phrog_110 minor tail protein tail 1 21459 23261
AFL46572.1 JQ698665_p80 hypothetical protein phrog_3851 unknown function unknown function -1 47924 48241
AFL46553.1 JQ698665_p55 hypothetical protein phrog_5618 unknown function unknown function -1 39140 39466
AFL46526.1 JQ698665_p23 major tail protein phrog_117 major tail protein tail 1 14912 15763
AFL46521.1 JQ698665_p18 structural protein phrog_1857 head-tail connector protein connector 1 13011 13247
AFL46514.1 JQ698665_p11 hypothetical protein phrog_21042 unknown function unknown function 1 6118 6354
AFL46545.1 JQ698665_p46 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33188 34975
AFL46522.1 JQ698665_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13247 13696
AFL46542.1 JQ698665_p40 hypothetical protein phrog_1966 unknown function unknown function -1 31534 31803
AFL46512.1 JQ698665_p9 hypothetical protein phrog_747 unknown function unknown function 1 4464 4721
AFL46552.1 JQ698665_p54 hypothetical protein phrog_474 phosphofructokinase other -1 38742 39143
AFL46604.1 JQ698665_p97 hypothetical protein phrog_37678 unknown function unknown function -1 52622 52912
AFL46581.1 JQ698665_p89 hypothetical protein phrog_11336 HNH endonuclease DNA, RNA and nucleotide metabolism -1 50768 50962