| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ740790 |
Definition |
Lactococcus Phage ASCC284, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
33178 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
34.65 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE86960.1 | JQ740790_p52 | hypothetical protein | phrog_5487 | unknown function | unknown function | -1 | 29731 | 29895 |
| AFE86930.1 | JQ740790_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 17912 | 18265 |
| AFE86944.1 | JQ740790_p36 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 22626 | 22949 |
| AFE86909.1 | JQ740790_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 241 | 765 |
| AFE86943.1 | JQ740790_p35 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 22421 | 22615 |
| AFE86939.1 | JQ740790_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 21295 | 21483 |
| AFE86947.1 | JQ740790_p39 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 23928 | 24245 |
| AFE86934.1 | JQ740790_p26 | hypothetical protein | phrog_10611 | unknown function | unknown function | -1 | 19965 | 20114 |
| AFE86917.1 | JQ740790_p9 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5913 | 6176 |
| AFE86950.1 | JQ740790_p42 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25066 | 25425 |
| AFE86936.1 | JQ740790_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 20635 | 20808 |
| AFE86920.1 | JQ740790_p12 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6819 | 7184 |
| AFE86935.1 | JQ740790_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 20288 | 20635 |
| AFE86913.1 | JQ740790_p5 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2768 | 3052 |
| AFE86925.1 | JQ740790_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11793 | 14783 |
| AFE86911.1 | JQ740790_p3 | hypothetical protein | phrog_9973 | unknown function | unknown function | 1 | 1005 | 1154 |
| AFE86919.1 | JQ740790_p11 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6487 | 6828 |
| AFE86951.1 | JQ740790_p43 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25429 | 25983 |
| AFE86926.1 | JQ740790_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14783 | 15679 |
| AFE86938.1 | JQ740790_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20977 | 21231 |
| AFE86921.1 | JQ740790_p13 | neck passage structure protein | phrog_16313 | virion structural protein | head and packaging | 1 | 7241 | 9907 |
| AFE86931.1 | JQ740790_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 18262 | 18942 |
| AFE86940.1 | JQ740790_p32 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 21560 | 22000 |
| AFE86937.1 | JQ740790_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20808 | 20984 |
| AFE86955.1 | JQ740790_p47 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 27270 | 27647 |
| AFE86918.1 | JQ740790_p10 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6176 | 6490 |
| AFE86915.1 | JQ740790_p7 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4182 | 4718 |
| AFE86922.1 | JQ740790_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 10026 | 10931 |
| AFE86916.1 | JQ740790_p8 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4711 | 5892 |
| AFE86949.1 | JQ740790_p41 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24835 | 25050 |
| AFE86933.1 | JQ740790_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19695 | 19964 |
| AFE86952.1 | JQ740790_p44 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25980 | 26771 |
| AFE86945.1 | JQ740790_p37 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22998 | 23432 |
| AFE86958.1 | JQ740790_p50 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 29051 | 29272 |
| AFE86964.1 | JQ740790_p56 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 31405 | 31536 |
| AFE86953.1 | JQ740790_p45 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26758 | 27024 |
| AFE86965.1 | JQ740790_p57 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 31533 | 32015 |
| AFE86954.1 | JQ740790_p46 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26978 | 27268 |
| AFE86957.1 | JQ740790_p49 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 28108 | 29058 |
| AFE86948.1 | JQ740790_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 24332 | 24838 |
| AFE86962.1 | JQ740790_p54 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30953 | 31141 |
| AFE86928.1 | JQ740790_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16796 | 17089 |
| AFE86912.1 | JQ740790_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1156 | 2778 |
| AFE86923.1 | JQ740790_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10986 | 11261 |
| AFE86956.1 | JQ740790_p48 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27704 | 27961 |
| AFE86910.1 | JQ740790_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 762 | 992 |
| AFE86961.1 | JQ740790_p53 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 30415 | 30534 |
| AFE86942.1 | JQ740790_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 22305 | 22424 |
| AFE86941.1 | JQ740790_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 21997 | 22305 |
| AFE86959.1 | JQ740790_p51 | hypothetical protein | phrog_12718 | unknown function | unknown function | -1 | 29341 | 29520 |
| AFE86963.1 | JQ740790_p55 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 31272 | 31400 |
| AFE86914.1 | JQ740790_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3065 | 4201 |
| AFE86932.1 | JQ740790_p24 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 19071 | 19634 |
| AFE86946.1 | JQ740790_p38 | hypothetical protein | phrog_4000 | unknown function | unknown function | -1 | 23422 | 23682 |
| AFE86927.1 | JQ740790_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15679 | 16806 |
| AFE86924.1 | JQ740790_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11281 | 11793 |
| AFE86929.1 | JQ740790_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 17079 | 17897 |