functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
JQ740792 |
Definition |
Lactococcus Phage ASCC310, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
32546 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
34.75 |
Number of singletons |
0 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
AFE87038.1 | JQ740792_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10986 | 11261 |
AFE87045.1 | JQ740792_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 17912 | 18265 |
AFE87059.1 | JQ740792_p36 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 22626 | 22949 |
AFE87046.1 | JQ740792_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 18262 | 18942 |
AFE87070.1 | JQ740792_p47 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 27271 | 27648 |
AFE87063.1 | JQ740792_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 24333 | 24839 |
AFE87033.1 | JQ740792_p10 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6176 | 6490 |
AFE87052.1 | JQ740792_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20808 | 20984 |
AFE87068.1 | JQ740792_p45 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26759 | 27025 |
AFE87061.1 | JQ740792_p38 | hypothetical protein | phrog_4000 | unknown function | unknown function | -1 | 23422 | 23682 |
AFE87048.1 | JQ740792_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19695 | 19964 |
AFE87026.1 | JQ740792_p3 | hypothetical protein | phrog_9973 | unknown function | unknown function | 1 | 1005 | 1154 |
AFE87075.1 | JQ740792_p52 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30321 | 30509 |
AFE87044.1 | JQ740792_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 17079 | 17897 |
AFE87072.1 | JQ740792_p49 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 28109 | 29059 |
AFE87050.1 | JQ740792_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 20288 | 20635 |
AFE87034.1 | JQ740792_p11 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6487 | 6828 |
AFE87073.1 | JQ740792_p50 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 29052 | 29273 |
AFE87056.1 | JQ740792_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 21997 | 22305 |
AFE87067.1 | JQ740792_p44 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25981 | 26772 |
AFE87030.1 | JQ740792_p7 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4182 | 4718 |
AFE87042.1 | JQ740792_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15679 | 16806 |
AFE87054.1 | JQ740792_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 21295 | 21483 |
AFE87031.1 | JQ740792_p8 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4711 | 5892 |
AFE87051.1 | JQ740792_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 20635 | 20808 |
AFE87060.1 | JQ740792_p37 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22998 | 23432 |
AFE87035.1 | JQ740792_p12 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6819 | 7184 |
AFE87039.1 | JQ740792_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11281 | 11793 |
AFE87025.1 | JQ740792_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 762 | 992 |
AFE87066.1 | JQ740792_p43 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25430 | 25984 |
AFE87071.1 | JQ740792_p48 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27705 | 27962 |
AFE87043.1 | JQ740792_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16796 | 17089 |
AFE87036.1 | JQ740792_p13 | neck passage structure protein | phrog_16313 | virion structural protein | head and packaging | 1 | 7241 | 9907 |
AFE87064.1 | JQ740792_p41 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24836 | 25051 |
AFE87029.1 | JQ740792_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3065 | 4201 |
AFE87078.1 | JQ740792_p55 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30901 | 31383 |
AFE87024.1 | JQ740792_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 241 | 765 |
AFE87040.1 | JQ740792_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11793 | 14783 |
AFE87055.1 | JQ740792_p32 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 21560 | 22000 |
AFE87076.1 | JQ740792_p53 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30640 | 30768 |
AFE87074.1 | JQ740792_p51 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 29794 | 29913 |
AFE87041.1 | JQ740792_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14783 | 15679 |
AFE87062.1 | JQ740792_p39 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 23929 | 24246 |
AFE87077.1 | JQ740792_p54 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30773 | 30904 |
AFE87028.1 | JQ740792_p5 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2768 | 3052 |
AFE87047.1 | JQ740792_p24 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 19071 | 19634 |
AFE87053.1 | JQ740792_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20977 | 21231 |
AFE87065.1 | JQ740792_p42 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25067 | 25426 |
AFE87057.1 | JQ740792_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 22305 | 22424 |
AFE87069.1 | JQ740792_p46 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26979 | 27269 |
AFE87049.1 | JQ740792_p26 | hypothetical protein | phrog_10611 | unknown function | unknown function | -1 | 19965 | 20114 |
AFE87032.1 | JQ740792_p9 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5913 | 6176 |
AFE87027.1 | JQ740792_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1156 | 2778 |
AFE87037.1 | JQ740792_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 10026 | 10931 |
AFE87058.1 | JQ740792_p35 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 22421 | 22615 |