| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ740793 |
Definition |
Lactococcus Phage ASCC324, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
32277 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.51 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE87090.1 | JQ740793_p12 | neck passage structure protein | phrog_7918 | neck passage structure protein | connector | 1 | 7079 | 9250 |
| AFE87079.1 | JQ740793_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 241 | 765 |
| AFE87111.1 | JQ740793_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 20976 | 21284 |
| AFE87126.1 | JQ740793_p48 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26585 | 26920 |
| AFE87094.1 | JQ740793_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10684 | 11196 |
| AFE87096.1 | JQ740793_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 13880 | 14776 |
| AFE87121.1 | JQ740793_p43 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24664 | 25023 |
| AFE87135.1 | JQ740793_p57 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30563 | 30694 |
| AFE87087.1 | JQ740793_p9 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6024 | 6338 |
| AFE87131.1 | JQ740793_p53 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 28683 | 28883 |
| AFE87091.1 | JQ740793_p13 | structural protein | phrog_15944 | virion structural protein | head and packaging | 1 | 9287 | 9424 |
| AFE87101.1 | JQ740793_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17342 | 18046 |
| AFE87092.1 | JQ740793_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9445 | 10350 |
| AFE87084.1 | JQ740793_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4030 | 4566 |
| AFE87116.1 | JQ740793_p38 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22869 | 23117 |
| AFE87093.1 | JQ740793_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10389 | 10664 |
| AFE87099.1 | JQ740793_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16176 | 16970 |
| AFE87118.1 | JQ740793_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23566 | 24099 |
| AFE87124.1 | JQ740793_p46 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26078 | 26344 |
| AFE87097.1 | JQ740793_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 14776 | 15903 |
| AFE87132.1 | JQ740793_p54 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29691 | 30110 |
| AFE87113.1 | JQ740793_p35 | hypothetical protein | phrog_17643 | unknown function | unknown function | -1 | 21440 | 21553 |
| AFE87106.1 | JQ740793_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19708 | 19884 |
| AFE87088.1 | JQ740793_p10 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6328 | 6663 |
| AFE87081.1 | JQ740793_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1004 | 2626 |
| AFE87128.1 | JQ740793_p50 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27269 | 28219 |
| AFE87080.1 | JQ740793_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 762 | 992 |
| AFE87134.1 | JQ740793_p56 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30430 | 30570 |
| AFE87098.1 | JQ740793_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 15893 | 16186 |
| AFE87086.1 | JQ740793_p8 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5761 | 6024 |
| AFE87112.1 | JQ740793_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21284 | 21403 |
| AFE87129.1 | JQ740793_p51 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28212 | 28433 |
| AFE87105.1 | JQ740793_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19541 | 19708 |
| AFE87107.1 | JQ740793_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19886 | 20077 |
| AFE87114.1 | JQ740793_p36 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 21550 | 21900 |
| AFE87095.1 | JQ740793_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11196 | 13880 |
| AFE87109.1 | JQ740793_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 20439 | 20627 |
| AFE87123.1 | JQ740793_p45 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25591 | 26091 |
| AFE87103.1 | JQ740793_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18752 | 19021 |
| AFE87136.1 | JQ740793_p58 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30691 | 31173 |
| AFE87125.1 | JQ740793_p47 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26301 | 26588 |
| AFE87119.1 | JQ740793_p41 | hypothetical protein | phrog_13331 | unknown function | unknown function | -1 | 24119 | 24439 |
| AFE87089.1 | JQ740793_p11 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6657 | 7022 |
| AFE87130.1 | JQ740793_p52 | hypothetical protein | phrog_12718 | unknown function | unknown function | -1 | 28503 | 28682 |
| AFE87110.1 | JQ740793_p32 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 20702 | 20917 |
| AFE87085.1 | JQ740793_p7 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4559 | 5740 |
| AFE87133.1 | JQ740793_p55 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30111 | 30299 |
| AFE87122.1 | JQ740793_p44 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25028 | 25594 |
| AFE87083.1 | JQ740793_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2913 | 4049 |
| AFE87127.1 | JQ740793_p49 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27013 | 27276 |
| AFE87108.1 | JQ740793_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20119 | 20370 |
| AFE87117.1 | JQ740793_p39 | hypothetical protein | phrog_9706 | unknown function | unknown function | -1 | 23340 | 23525 |
| AFE87104.1 | JQ740793_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19194 | 19541 |
| AFE87100.1 | JQ740793_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 16992 | 17345 |
| AFE87120.1 | JQ740793_p42 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24436 | 24651 |
| AFE87115.1 | JQ740793_p37 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 21962 | 22876 |
| AFE87082.1 | JQ740793_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2616 | 2900 |
| AFE87102.1 | JQ740793_p24 | hypothetical protein | phrog_17309 | unknown function | unknown function | -1 | 18143 | 18364 |