| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ740796 |
Definition |
Lactococcus Phage ASCC358, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
32052 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
34.76 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE87257.1 | JQ740796_p9 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5913 | 6176 |
| AFE87305.1 | JQ740796_p57 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 31112 | 31279 |
| AFE87282.1 | JQ740796_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 22052 | 22171 |
| AFE87276.1 | JQ740796_p28 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 20289 | 20636 |
| AFE87304.1 | JQ740796_p56 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30633 | 31115 |
| AFE87269.1 | JQ740796_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 17080 | 17898 |
| AFE87275.1 | JQ740796_p27 | hypothetical protein | phrog_10611 | unknown function | unknown function | -1 | 19966 | 20115 |
| AFE87255.1 | JQ740796_p7 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4182 | 4718 |
| AFE87298.1 | JQ740796_p50 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28571 | 28792 |
| AFE87265.1 | JQ740796_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11794 | 14784 |
| AFE87254.1 | JQ740796_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3065 | 4201 |
| AFE87264.1 | JQ740796_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11282 | 11794 |
| AFE87296.1 | JQ740796_p48 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27218 | 27481 |
| AFE87253.1 | JQ740796_p5 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2768 | 3052 |
| AFE87266.1 | JQ740796_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14784 | 15680 |
| AFE87286.1 | JQ740796_p38 | hypothetical protein | phrog_4000 | unknown function | unknown function | -1 | 22947 | 23207 |
| AFE87289.1 | JQ740796_p41 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24361 | 24576 |
| AFE87299.1 | JQ740796_p51 | hypothetical protein | phrog_12718 | unknown function | unknown function | -1 | 28862 | 29041 |
| AFE87285.1 | JQ740796_p37 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22745 | 22957 |
| AFE87293.1 | JQ740796_p45 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26284 | 26550 |
| AFE87300.1 | JQ740796_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29079 | 29228 |
| AFE87271.1 | JQ740796_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 18263 | 18943 |
| AFE87260.1 | JQ740796_p12 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6819 | 7136 |
| AFE87270.1 | JQ740796_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 17913 | 18266 |
| AFE87292.1 | JQ740796_p44 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25506 | 26297 |
| AFE87258.1 | JQ740796_p10 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6176 | 6490 |
| AFE87256.1 | JQ740796_p8 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4711 | 5892 |
| AFE87251.1 | JQ740796_p3 | hypothetical protein | phrog_9973 | unknown function | unknown function | 1 | 1005 | 1154 |
| AFE87281.1 | JQ740796_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 21744 | 22052 |
| AFE87284.1 | JQ740796_p36 | hypothetical protein | phrog_20711 | unknown function | unknown function | -1 | 22373 | 22621 |
| AFE87302.1 | JQ740796_p54 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30372 | 30500 |
| AFE87287.1 | JQ740796_p39 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 23454 | 23771 |
| AFE87295.1 | JQ740796_p47 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26796 | 27125 |
| AFE87268.1 | JQ740796_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16797 | 17090 |
| AFE87278.1 | JQ740796_p30 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20809 | 20985 |
| AFE87263.1 | JQ740796_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10987 | 11262 |
| AFE87290.1 | JQ740796_p42 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24592 | 24951 |
| AFE87262.1 | JQ740796_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 10027 | 10932 |
| AFE87280.1 | JQ740796_p32 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 21307 | 21747 |
| AFE87252.1 | JQ740796_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1156 | 2778 |
| AFE87291.1 | JQ740796_p43 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24955 | 25509 |
| AFE87261.1 | JQ740796_p13 | neck passage structure protein | phrog_16313 | virion structural protein | head and packaging | 1 | 7242 | 9908 |
| AFE87249.1 | JQ740796_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 241 | 765 |
| AFE87279.1 | JQ740796_p31 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20978 | 21232 |
| AFE87283.1 | JQ740796_p35 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 22168 | 22362 |
| AFE87267.1 | JQ740796_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15680 | 16807 |
| AFE87288.1 | JQ740796_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23858 | 24364 |
| AFE87272.1 | JQ740796_p24 | hypothetical protein | phrog_17309 | unknown function | unknown function | -1 | 19072 | 19236 |
| AFE87303.1 | JQ740796_p55 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30505 | 30636 |
| AFE87294.1 | JQ740796_p46 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26507 | 26794 |
| AFE87301.1 | JQ740796_p53 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30053 | 30241 |
| AFE87297.1 | JQ740796_p49 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27628 | 28578 |
| AFE87277.1 | JQ740796_p29 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 20636 | 20809 |
| AFE87274.1 | JQ740796_p26 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19696 | 19965 |
| AFE87273.1 | JQ740796_p25 | hypothetical protein | phrog_34114 | unknown function | unknown function | -1 | 19252 | 19557 |
| AFE87259.1 | JQ740796_p11 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6487 | 6828 |
| AFE87250.1 | JQ740796_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 762 | 992 |