Genomic map of Lactococcus phage ASCC358 (JQ740796)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JQ740796
Definition
Lactococcus Phage ASCC358, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
PVOG
Length
32052
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
34.76
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFE87257.1 JQ740796_p9 structural protein phrog_1428 head-tail connector protein connector 1 5913 6176
AFE87305.1 JQ740796_p57 hypothetical protein phrog_1652 unknown function unknown function 1 31112 31279
AFE87282.1 JQ740796_p34 hypothetical protein phrog_1508 unknown function unknown function -1 22052 22171
AFE87276.1 JQ740796_p28 hypothetical protein phrog_1415 unknown function unknown function -1 20289 20636
AFE87304.1 JQ740796_p56 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30633 31115
AFE87269.1 JQ740796_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 17080 17898
AFE87275.1 JQ740796_p27 hypothetical protein phrog_10611 unknown function unknown function -1 19966 20115
AFE87255.1 JQ740796_p7 protease phrog_80 head maturation protease head and packaging 1 4182 4718
AFE87298.1 JQ740796_p50 hypothetical protein phrog_2541 unknown function unknown function -1 28571 28792
AFE87265.1 JQ740796_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11794 14784
AFE87254.1 JQ740796_p6 portal protein phrog_12 portal protein head and packaging 1 3065 4201
AFE87264.1 JQ740796_p16 structural protein phrog_1421 virion structural protein head and packaging 1 11282 11794
AFE87296.1 JQ740796_p48 hypothetical protein phrog_1405 unknown function unknown function -1 27218 27481
AFE87253.1 JQ740796_p5 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2768 3052
AFE87266.1 JQ740796_p18 hypothetical protein phrog_1424 tail protein tail 1 14784 15680
AFE87286.1 JQ740796_p38 hypothetical protein phrog_4000 unknown function unknown function -1 22947 23207
AFE87289.1 JQ740796_p41 hypothetical protein phrog_1295 unknown function unknown function -1 24361 24576
AFE87299.1 JQ740796_p51 hypothetical protein phrog_12718 unknown function unknown function -1 28862 29041
AFE87285.1 JQ740796_p37 hypothetical protein phrog_1825 DNA methyltransferase other -1 22745 22957
AFE87293.1 JQ740796_p45 hypothetical protein phrog_1449 unknown function unknown function -1 26284 26550
AFE87300.1 JQ740796_p52 hypothetical protein singleton unknown function unknown function -1 29079 29228
AFE87271.1 JQ740796_p23 lysin phrog_670 endolysin lysis 1 18263 18943
AFE87260.1 JQ740796_p12 structural protein phrog_1440 virion structural protein head and packaging 1 6819 7136
AFE87270.1 JQ740796_p22 bifunctional anti-holin / holin phrog_1379 unknown function unknown function 1 17913 18266
AFE87292.1 JQ740796_p44 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25506 26297
AFE87258.1 JQ740796_p10 structural protein phrog_1429 virion structural protein head and packaging 1 6176 6490
AFE87256.1 JQ740796_p8 structural protein phrog_1393 minor head protein head and packaging 1 4711 5892
AFE87251.1 JQ740796_p3 hypothetical protein phrog_9973 unknown function unknown function 1 1005 1154
AFE87281.1 JQ740796_p33 early protein phrog_1225 unknown function unknown function -1 21744 22052
AFE87284.1 JQ740796_p36 hypothetical protein phrog_20711 unknown function unknown function -1 22373 22621
AFE87302.1 JQ740796_p54 hypothetical protein phrog_1952 unknown function unknown function 1 30372 30500
AFE87287.1 JQ740796_p39 hypothetical protein phrog_1919 unknown function unknown function -1 23454 23771
AFE87295.1 JQ740796_p47 hypothetical protein phrog_2228 unknown function unknown function -1 26796 27125
AFE87268.1 JQ740796_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16797 17090
AFE87278.1 JQ740796_p30 hypothetical protein phrog_1820 unknown function unknown function -1 20809 20985
AFE87263.1 JQ740796_p15 structural protein phrog_1420 virion structural protein head and packaging 1 10987 11262
AFE87290.1 JQ740796_p42 early protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24592 24951
AFE87262.1 JQ740796_p14 major capsid protein phrog_1433 major tail protein tail 1 10027 10932
AFE87280.1 JQ740796_p32 hypothetical protein phrog_3530 unknown function unknown function -1 21307 21747
AFE87252.1 JQ740796_p4 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1156 2778
AFE87291.1 JQ740796_p43 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24955 25509
AFE87261.1 JQ740796_p13 neck passage structure protein phrog_16313 virion structural protein head and packaging 1 7242 9908
AFE87249.1 JQ740796_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 241 765
AFE87279.1 JQ740796_p31 early protein phrog_1509 unknown function unknown function -1 20978 21232
AFE87283.1 JQ740796_p35 hypothetical protein phrog_3002 unknown function unknown function -1 22168 22362
AFE87267.1 JQ740796_p19 hypothetical protein phrog_1432 tail associated lysin tail 1 15680 16807
AFE87288.1 JQ740796_p40 hypothetical protein phrog_1317 unknown function unknown function -1 23858 24364
AFE87272.1 JQ740796_p24 hypothetical protein phrog_17309 unknown function unknown function -1 19072 19236
AFE87303.1 JQ740796_p55 hypothetical protein phrog_1436 unknown function unknown function 1 30505 30636
AFE87294.1 JQ740796_p46 hypothetical protein phrog_1632 unknown function unknown function -1 26507 26794
AFE87301.1 JQ740796_p53 hypothetical protein phrog_1656 unknown function unknown function -1 30053 30241
AFE87297.1 JQ740796_p49 DNA polymerase subunit phrog_1284 unknown function unknown function -1 27628 28578
AFE87277.1 JQ740796_p29 hypothetical protein phrog_1441 unknown function unknown function -1 20636 20809
AFE87274.1 JQ740796_p26 hypothetical protein phrog_1430 unknown function unknown function -1 19696 19965
AFE87273.1 JQ740796_p25 hypothetical protein phrog_34114 unknown function unknown function -1 19252 19557
AFE87259.1 JQ740796_p11 structural protein phrog_1484 virion structural protein head and packaging 1 6487 6828
AFE87250.1 JQ740796_p2 hypothetical protein phrog_4501 unknown function unknown function 1 762 992