| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ740800 |
Definition |
Lactococcus Phage ASCC397, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
32241 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
34.49 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE87492.1 | JQ740800_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9445 | 10350 |
| AFE87520.1 | JQ740800_p42 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24400 | 24615 |
| AFE87504.1 | JQ740800_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19158 | 19505 |
| AFE87511.1 | JQ740800_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 20940 | 21248 |
| AFE87529.1 | JQ740800_p51 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28176 | 28397 |
| AFE87490.1 | JQ740800_p12 | neck passage structure protein | phrog_7918 | neck passage structure protein | connector | 1 | 7079 | 9250 |
| AFE87532.1 | JQ740800_p54 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29655 | 30074 |
| AFE87527.1 | JQ740800_p49 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26977 | 27240 |
| AFE87502.1 | JQ740800_p24 | hypothetical protein | phrog_17309 | unknown function | unknown function | -1 | 18107 | 18328 |
| AFE87510.1 | JQ740800_p32 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 20666 | 20881 |
| AFE87493.1 | JQ740800_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10389 | 10664 |
| AFE87501.1 | JQ740800_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17306 | 18010 |
| AFE87489.1 | JQ740800_p11 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6657 | 7022 |
| AFE87525.1 | JQ740800_p47 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26265 | 26552 |
| AFE87483.1 | JQ740800_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2913 | 4049 |
| AFE87486.1 | JQ740800_p8 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5761 | 6024 |
| AFE87523.1 | JQ740800_p45 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25555 | 26055 |
| AFE87531.1 | JQ740800_p53 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 28647 | 28847 |
| AFE87491.1 | JQ740800_p13 | structural protein | phrog_15944 | virion structural protein | head and packaging | 1 | 9287 | 9424 |
| AFE87530.1 | JQ740800_p52 | hypothetical protein | phrog_12718 | unknown function | unknown function | -1 | 28467 | 28646 |
| AFE87514.1 | JQ740800_p36 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 21514 | 21864 |
| AFE87528.1 | JQ740800_p50 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27233 | 28183 |
| AFE87535.1 | JQ740800_p57 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30527 | 30658 |
| AFE87507.1 | JQ740800_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19850 | 20041 |
| AFE87517.1 | JQ740800_p39 | hypothetical protein | phrog_9706 | unknown function | unknown function | -1 | 23304 | 23489 |
| AFE87512.1 | JQ740800_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21248 | 21367 |
| AFE87480.1 | JQ740800_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 762 | 992 |
| AFE87508.1 | JQ740800_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20083 | 20340 |
| AFE87494.1 | JQ740800_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10684 | 11196 |
| AFE87524.1 | JQ740800_p46 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26042 | 26308 |
| AFE87479.1 | JQ740800_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 241 | 765 |
| AFE87485.1 | JQ740800_p7 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4559 | 5740 |
| AFE87482.1 | JQ740800_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2616 | 2900 |
| AFE87495.1 | JQ740800_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11196 | 13880 |
| AFE87488.1 | JQ740800_p10 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6328 | 6663 |
| AFE87506.1 | JQ740800_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19672 | 19848 |
| AFE87519.1 | JQ740800_p41 | hypothetical protein | phrog_13331 | unknown function | unknown function | -1 | 24083 | 24403 |
| AFE87513.1 | JQ740800_p35 | hypothetical protein | phrog_17643 | unknown function | unknown function | -1 | 21404 | 21517 |
| AFE87537.1 | JQ740800_p59 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 31134 | 31301 |
| AFE87536.1 | JQ740800_p58 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30655 | 31137 |
| AFE87505.1 | JQ740800_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19505 | 19672 |
| AFE87503.1 | JQ740800_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18716 | 18985 |
| AFE87499.1 | JQ740800_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16176 | 16934 |
| AFE87509.1 | JQ740800_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 20403 | 20591 |
| AFE87515.1 | JQ740800_p37 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 21926 | 22840 |
| AFE87500.1 | JQ740800_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 16956 | 17309 |
| AFE87534.1 | JQ740800_p56 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30394 | 30534 |
| AFE87498.1 | JQ740800_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 15893 | 16186 |
| AFE87496.1 | JQ740800_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 13880 | 14776 |
| AFE87526.1 | JQ740800_p48 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26549 | 26884 |
| AFE87484.1 | JQ740800_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4030 | 4566 |
| AFE87516.1 | JQ740800_p38 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22833 | 23081 |
| AFE87522.1 | JQ740800_p44 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24992 | 25558 |
| AFE87497.1 | JQ740800_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 14776 | 15903 |
| AFE87487.1 | JQ740800_p9 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6024 | 6338 |
| AFE87481.1 | JQ740800_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1004 | 2626 |
| AFE87521.1 | JQ740800_p43 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24628 | 24987 |
| AFE87518.1 | JQ740800_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23530 | 24063 |
| AFE87533.1 | JQ740800_p55 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30075 | 30263 |