Genomic map of Lactococcus phage ASCC397 (JQ740800)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JQ740800
Definition
Lactococcus Phage ASCC397, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
PVOG
Length
32241
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
34.49
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFE87492.1 JQ740800_p14 major capsid protein phrog_1433 major tail protein tail 1 9445 10350
AFE87520.1 JQ740800_p42 hypothetical protein phrog_1295 unknown function unknown function -1 24400 24615
AFE87504.1 JQ740800_p26 hypothetical protein phrog_1415 unknown function unknown function -1 19158 19505
AFE87511.1 JQ740800_p33 early protein phrog_1225 unknown function unknown function -1 20940 21248
AFE87529.1 JQ740800_p51 hypothetical protein phrog_2541 unknown function unknown function -1 28176 28397
AFE87490.1 JQ740800_p12 neck passage structure protein phrog_7918 neck passage structure protein connector 1 7079 9250
AFE87532.1 JQ740800_p54 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 29655 30074
AFE87527.1 JQ740800_p49 hypothetical protein phrog_1405 unknown function unknown function -1 26977 27240
AFE87502.1 JQ740800_p24 hypothetical protein phrog_17309 unknown function unknown function -1 18107 18328
AFE87510.1 JQ740800_p32 hypothetical protein phrog_6037 unknown function unknown function -1 20666 20881
AFE87493.1 JQ740800_p15 structural protein phrog_1420 virion structural protein head and packaging 1 10389 10664
AFE87501.1 JQ740800_p23 lysin phrog_670 endolysin lysis 1 17306 18010
AFE87489.1 JQ740800_p11 structural protein phrog_1440 virion structural protein head and packaging 1 6657 7022
AFE87525.1 JQ740800_p47 hypothetical protein phrog_1632 unknown function unknown function -1 26265 26552
AFE87483.1 JQ740800_p5 portal protein phrog_12 portal protein head and packaging 1 2913 4049
AFE87486.1 JQ740800_p8 structural protein phrog_1428 head-tail connector protein connector 1 5761 6024
AFE87523.1 JQ740800_p45 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25555 26055
AFE87531.1 JQ740800_p53 hypothetical protein phrog_4505 unknown function unknown function -1 28647 28847
AFE87491.1 JQ740800_p13 structural protein phrog_15944 virion structural protein head and packaging 1 9287 9424
AFE87530.1 JQ740800_p52 hypothetical protein phrog_12718 unknown function unknown function -1 28467 28646
AFE87514.1 JQ740800_p36 hypothetical protein phrog_3972 unknown function unknown function -1 21514 21864
AFE87528.1 JQ740800_p50 DNA polymerase subunit phrog_1284 unknown function unknown function -1 27233 28183
AFE87535.1 JQ740800_p57 hypothetical protein phrog_1436 unknown function unknown function 1 30527 30658
AFE87507.1 JQ740800_p29 hypothetical protein phrog_2530 unknown function unknown function -1 19850 20041
AFE87517.1 JQ740800_p39 hypothetical protein phrog_9706 unknown function unknown function -1 23304 23489
AFE87512.1 JQ740800_p34 hypothetical protein phrog_1508 unknown function unknown function -1 21248 21367
AFE87480.1 JQ740800_p2 hypothetical protein phrog_4501 unknown function unknown function 1 762 992
AFE87508.1 JQ740800_p30 early protein phrog_1509 unknown function unknown function -1 20083 20340
AFE87494.1 JQ740800_p16 structural protein phrog_1421 virion structural protein head and packaging 1 10684 11196
AFE87524.1 JQ740800_p46 hypothetical protein phrog_1449 unknown function unknown function -1 26042 26308
AFE87479.1 JQ740800_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 241 765
AFE87485.1 JQ740800_p7 structural protein phrog_1393 minor head protein head and packaging 1 4559 5740
AFE87482.1 JQ740800_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2616 2900
AFE87495.1 JQ740800_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11196 13880
AFE87488.1 JQ740800_p10 structural protein phrog_1484 virion structural protein head and packaging 1 6328 6663
AFE87506.1 JQ740800_p28 hypothetical protein phrog_1820 unknown function unknown function -1 19672 19848
AFE87519.1 JQ740800_p41 hypothetical protein phrog_13331 unknown function unknown function -1 24083 24403
AFE87513.1 JQ740800_p35 hypothetical protein phrog_17643 unknown function unknown function -1 21404 21517
AFE87537.1 JQ740800_p59 hypothetical protein phrog_1652 unknown function unknown function 1 31134 31301
AFE87536.1 JQ740800_p58 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30655 31137
AFE87505.1 JQ740800_p27 hypothetical protein phrog_1441 unknown function unknown function -1 19505 19672
AFE87503.1 JQ740800_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18716 18985
AFE87499.1 JQ740800_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16176 16934
AFE87509.1 JQ740800_p31 hypothetical protein phrog_3365 unknown function unknown function -1 20403 20591
AFE87515.1 JQ740800_p37 hypothetical protein phrog_56 DNA methyltransferase other -1 21926 22840
AFE87500.1 JQ740800_p22 bifunctional anti-holin / holin phrog_1379 unknown function unknown function 1 16956 17309
AFE87534.1 JQ740800_p56 hypothetical protein phrog_1952 unknown function unknown function 1 30394 30534
AFE87498.1 JQ740800_p20 hypothetical protein phrog_1434 unknown function unknown function 1 15893 16186
AFE87496.1 JQ740800_p18 hypothetical protein phrog_1424 tail protein tail 1 13880 14776
AFE87526.1 JQ740800_p48 hypothetical protein phrog_2228 unknown function unknown function -1 26549 26884
AFE87484.1 JQ740800_p6 protease phrog_80 head maturation protease head and packaging 1 4030 4566
AFE87516.1 JQ740800_p38 hypothetical protein phrog_1825 DNA methyltransferase other -1 22833 23081
AFE87522.1 JQ740800_p44 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24992 25558
AFE87497.1 JQ740800_p19 hypothetical protein phrog_1432 tail associated lysin tail 1 14776 15903
AFE87487.1 JQ740800_p9 structural protein phrog_1429 virion structural protein head and packaging 1 6024 6338
AFE87481.1 JQ740800_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1004 2626
AFE87521.1 JQ740800_p43 early protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24628 24987
AFE87518.1 JQ740800_p40 hypothetical protein phrog_1317 unknown function unknown function -1 23530 24063
AFE87533.1 JQ740800_p55 hypothetical protein phrog_1656 unknown function unknown function -1 30075 30263