Genomic map of Lactococcus phage ASCC454 (JQ740802)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JQ740802
Definition
Lactococcus Phage ASCC454, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
PVOG
Length
32583
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
34.52
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFE87606.1 JQ740802_p10 structural protein phrog_1484 virion structural protein head and packaging 1 6328 6663
AFE87607.1 JQ740802_p11 structural protein phrog_1440 virion structural protein head and packaging 1 6657 7022
AFE87604.1 JQ740802_p8 structural protein phrog_1428 head-tail connector protein connector 1 5761 6024
AFE87600.1 JQ740802_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2616 2900
AFE87598.1 JQ740802_p2 hypothetical protein phrog_4501 unknown function unknown function 1 762 992
AFE87641.1 JQ740802_p45 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25897 26397
AFE87621.1 JQ740802_p25 hypothetical protein phrog_1430 unknown function unknown function -1 19058 19327
AFE87635.1 JQ740802_p39 hypothetical protein phrog_9706 unknown function unknown function -1 23646 23831
AFE87648.1 JQ740802_p52 hypothetical protein phrog_12718 unknown function unknown function -1 28809 28988
AFE87622.1 JQ740802_p26 hypothetical protein phrog_1415 unknown function unknown function -1 19500 19847
AFE87624.1 JQ740802_p28 hypothetical protein phrog_1820 unknown function unknown function -1 20014 20190
AFE87644.1 JQ740802_p48 hypothetical protein phrog_2228 unknown function unknown function -1 26891 27226
AFE87653.1 JQ740802_p57 hypothetical protein phrog_1436 unknown function unknown function 1 30869 31000
AFE87638.1 JQ740802_p42 hypothetical protein phrog_1295 unknown function unknown function -1 24742 24957
AFE87603.1 JQ740802_p7 structural protein phrog_1393 minor head protein head and packaging 1 4559 5740
AFE87651.1 JQ740802_p55 hypothetical protein phrog_1656 unknown function unknown function -1 30417 30605
AFE87630.1 JQ740802_p34 hypothetical protein phrog_1508 unknown function unknown function -1 21590 21709
AFE87625.1 JQ740802_p29 hypothetical protein phrog_2530 unknown function unknown function -1 20192 20383
AFE87610.1 JQ740802_p14 major capsid protein phrog_1433 major tail protein tail 1 9445 10350
AFE87631.1 JQ740802_p35 hypothetical protein phrog_17643 unknown function unknown function -1 21746 21859
AFE87620.1 JQ740802_p24 hypothetical protein phrog_3874 transglycosylase other -1 18449 18997
AFE87602.1 JQ740802_p6 protease phrog_80 head maturation protease head and packaging 1 4030 4566
AFE87618.1 JQ740802_p22 bifunctional anti-holin / holin phrog_1379 unknown function unknown function 1 17298 17651
AFE87632.1 JQ740802_p36 hypothetical protein phrog_3972 unknown function unknown function -1 21856 22206
AFE87654.1 JQ740802_p58 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30997 31479
AFE87652.1 JQ740802_p56 hypothetical protein phrog_1952 unknown function unknown function 1 30736 30876
AFE87649.1 JQ740802_p53 hypothetical protein phrog_4505 unknown function unknown function -1 28989 29189
AFE87616.1 JQ740802_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16199 16492
AFE87633.1 JQ740802_p37 hypothetical protein phrog_56 DNA methyltransferase other -1 22268 23182
AFE87642.1 JQ740802_p46 hypothetical protein phrog_1449 unknown function unknown function -1 26384 26650
AFE87626.1 JQ740802_p30 early protein phrog_1509 unknown function unknown function -1 20425 20676
AFE87614.1 JQ740802_p18 hypothetical protein phrog_1424 tail protein tail 1 14186 15082
AFE87608.1 JQ740802_p12 neck passage structure protein phrog_7918 neck passage structure protein connector 1 7079 9250
AFE87615.1 JQ740802_p19 hypothetical protein phrog_1432 tail associated lysin tail 1 15082 16209
AFE87612.1 JQ740802_p16 structural protein phrog_1421 virion structural protein head and packaging 1 10684 11196
AFE87629.1 JQ740802_p33 early protein phrog_1225 unknown function unknown function -1 21282 21590
AFE87609.1 JQ740802_p13 structural protein phrog_15944 virion structural protein head and packaging 1 9287 9424
AFE87619.1 JQ740802_p23 lysin phrog_670 endolysin lysis 1 17648 18352
AFE87643.1 JQ740802_p47 hypothetical protein phrog_1632 unknown function unknown function -1 26607 26894
AFE87650.1 JQ740802_p54 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 29997 30416
AFE87613.1 JQ740802_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11196 14186
AFE87628.1 JQ740802_p32 hypothetical protein phrog_6037 unknown function unknown function -1 21008 21223
AFE87646.1 JQ740802_p50 DNA polymerase subunit phrog_1284 unknown function unknown function -1 27575 28525
AFE87605.1 JQ740802_p9 structural protein phrog_1429 virion structural protein head and packaging 1 6024 6338
AFE87639.1 JQ740802_p43 early protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24970 25329
AFE87599.1 JQ740802_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1004 2626
AFE87611.1 JQ740802_p15 structural protein phrog_1420 virion structural protein head and packaging 1 10389 10664
AFE87647.1 JQ740802_p51 hypothetical protein phrog_2541 unknown function unknown function -1 28518 28739
AFE87617.1 JQ740802_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16482 17276
AFE87634.1 JQ740802_p38 hypothetical protein phrog_1825 DNA methyltransferase other -1 23175 23423
AFE87640.1 JQ740802_p44 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 25334 25900
AFE87601.1 JQ740802_p5 portal protein phrog_12 portal protein head and packaging 1 2913 4049
AFE87637.1 JQ740802_p41 hypothetical protein phrog_13331 unknown function unknown function -1 24425 24745
AFE87623.1 JQ740802_p27 hypothetical protein phrog_1441 unknown function unknown function -1 19847 20014
AFE87627.1 JQ740802_p31 hypothetical protein phrog_3365 unknown function unknown function -1 20745 20933
AFE87636.1 JQ740802_p40 hypothetical protein phrog_1317 unknown function unknown function -1 23872 24405
AFE87645.1 JQ740802_p49 hypothetical protein phrog_1405 unknown function unknown function -1 27319 27582
AFE87597.1 JQ740802_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 241 765