| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ740802 |
Definition |
Lactococcus Phage ASCC454, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
32583 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.52 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE87606.1 | JQ740802_p10 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6328 | 6663 |
| AFE87607.1 | JQ740802_p11 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6657 | 7022 |
| AFE87604.1 | JQ740802_p8 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5761 | 6024 |
| AFE87600.1 | JQ740802_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2616 | 2900 |
| AFE87598.1 | JQ740802_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 762 | 992 |
| AFE87641.1 | JQ740802_p45 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25897 | 26397 |
| AFE87621.1 | JQ740802_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19058 | 19327 |
| AFE87635.1 | JQ740802_p39 | hypothetical protein | phrog_9706 | unknown function | unknown function | -1 | 23646 | 23831 |
| AFE87648.1 | JQ740802_p52 | hypothetical protein | phrog_12718 | unknown function | unknown function | -1 | 28809 | 28988 |
| AFE87622.1 | JQ740802_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19500 | 19847 |
| AFE87624.1 | JQ740802_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20014 | 20190 |
| AFE87644.1 | JQ740802_p48 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26891 | 27226 |
| AFE87653.1 | JQ740802_p57 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30869 | 31000 |
| AFE87638.1 | JQ740802_p42 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24742 | 24957 |
| AFE87603.1 | JQ740802_p7 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4559 | 5740 |
| AFE87651.1 | JQ740802_p55 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30417 | 30605 |
| AFE87630.1 | JQ740802_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21590 | 21709 |
| AFE87625.1 | JQ740802_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20192 | 20383 |
| AFE87610.1 | JQ740802_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9445 | 10350 |
| AFE87631.1 | JQ740802_p35 | hypothetical protein | phrog_17643 | unknown function | unknown function | -1 | 21746 | 21859 |
| AFE87620.1 | JQ740802_p24 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 18449 | 18997 |
| AFE87602.1 | JQ740802_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4030 | 4566 |
| AFE87618.1 | JQ740802_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 17298 | 17651 |
| AFE87632.1 | JQ740802_p36 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 21856 | 22206 |
| AFE87654.1 | JQ740802_p58 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30997 | 31479 |
| AFE87652.1 | JQ740802_p56 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30736 | 30876 |
| AFE87649.1 | JQ740802_p53 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 28989 | 29189 |
| AFE87616.1 | JQ740802_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16199 | 16492 |
| AFE87633.1 | JQ740802_p37 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 22268 | 23182 |
| AFE87642.1 | JQ740802_p46 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26384 | 26650 |
| AFE87626.1 | JQ740802_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20425 | 20676 |
| AFE87614.1 | JQ740802_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14186 | 15082 |
| AFE87608.1 | JQ740802_p12 | neck passage structure protein | phrog_7918 | neck passage structure protein | connector | 1 | 7079 | 9250 |
| AFE87615.1 | JQ740802_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15082 | 16209 |
| AFE87612.1 | JQ740802_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10684 | 11196 |
| AFE87629.1 | JQ740802_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 21282 | 21590 |
| AFE87609.1 | JQ740802_p13 | structural protein | phrog_15944 | virion structural protein | head and packaging | 1 | 9287 | 9424 |
| AFE87619.1 | JQ740802_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17648 | 18352 |
| AFE87643.1 | JQ740802_p47 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26607 | 26894 |
| AFE87650.1 | JQ740802_p54 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29997 | 30416 |
| AFE87613.1 | JQ740802_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11196 | 14186 |
| AFE87628.1 | JQ740802_p32 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 21008 | 21223 |
| AFE87646.1 | JQ740802_p50 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27575 | 28525 |
| AFE87605.1 | JQ740802_p9 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6024 | 6338 |
| AFE87639.1 | JQ740802_p43 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24970 | 25329 |
| AFE87599.1 | JQ740802_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1004 | 2626 |
| AFE87611.1 | JQ740802_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10389 | 10664 |
| AFE87647.1 | JQ740802_p51 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28518 | 28739 |
| AFE87617.1 | JQ740802_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16482 | 17276 |
| AFE87634.1 | JQ740802_p38 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 23175 | 23423 |
| AFE87640.1 | JQ740802_p44 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25334 | 25900 |
| AFE87601.1 | JQ740802_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2913 | 4049 |
| AFE87637.1 | JQ740802_p41 | hypothetical protein | phrog_13331 | unknown function | unknown function | -1 | 24425 | 24745 |
| AFE87623.1 | JQ740802_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19847 | 20014 |
| AFE87627.1 | JQ740802_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 20745 | 20933 |
| AFE87636.1 | JQ740802_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23872 | 24405 |
| AFE87645.1 | JQ740802_p49 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27319 | 27582 |
| AFE87597.1 | JQ740802_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 241 | 765 |