Genomic map of Lactococcus phage ASCC489 (JQ740807)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JQ740807
Definition
Lactococcus Phage ASCC489, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
PVOG
Length
30876
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
54
%GC
34.85
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFE86729.1 JQ740807_p49 hypothetical protein phrog_2541 unknown function unknown function -1 27702 27923
AFE86706.1 JQ740807_p26 hypothetical protein phrog_1430 unknown function unknown function -1 19686 19955
AFE86692.1 JQ740807_p12 structural protein phrog_1440 virion structural protein head and packaging 1 6841 7206
AFE86728.1 JQ740807_p48 DNA polymerase subunit phrog_1284 unknown function unknown function -1 26759 27709
AFE86718.1 JQ740807_p38 hypothetical protein phrog_4000 unknown function unknown function -1 23024 23284
AFE86726.1 JQ740807_p46 hypothetical protein phrog_2228 unknown function unknown function -1 26084 26410
AFE86711.1 JQ740807_p31 early protein phrog_1509 unknown function unknown function -1 21053 21310
AFE86724.1 JQ740807_p44 hypothetical protein phrog_1449 unknown function unknown function -1 25572 25838
AFE86722.1 JQ740807_p42 early protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24668 25027
AFE86713.1 JQ740807_p33 early protein phrog_1225 unknown function unknown function -1 21822 22130
AFE86708.1 JQ740807_p28 hypothetical protein phrog_1441 unknown function unknown function -1 20475 20642
AFE86691.1 JQ740807_p11 structural protein phrog_1484 virion structural protein head and packaging 1 6509 6850
AFE86719.1 JQ740807_p39 hypothetical protein phrog_1919 unknown function unknown function -1 23530 23847
AFE86682.1 JQ740807_p2 hypothetical protein phrog_4501 unknown function unknown function 1 784 1014
AFE86701.1 JQ740807_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 17101 17919
AFE86698.1 JQ740807_p18 hypothetical protein phrog_1424 tail protein tail 1 14805 15701
AFE86732.1 JQ740807_p52 hypothetical protein phrog_5027 unknown function unknown function 1 29243 29470
AFE86717.1 JQ740807_p37 hypothetical protein phrog_1825 DNA methyltransferase other -1 22738 23034
AFE86699.1 JQ740807_p19 hypothetical protein phrog_1432 tail associated lysin tail 1 15701 16828
AFE86714.1 JQ740807_p34 hypothetical protein phrog_1508 unknown function unknown function -1 22130 22249
AFE86720.1 JQ740807_p40 hypothetical protein phrog_1317 unknown function unknown function -1 23934 24317
AFE86694.1 JQ740807_p14 major capsid protein phrog_1433 major tail protein tail 1 10048 10953
AFE86734.1 JQ740807_p54 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 29603 30085
AFE86687.1 JQ740807_p7 protease phrog_80 head maturation protease head and packaging 1 4204 4740
AFE86683.1 JQ740807_p3 hypothetical protein phrog_9973 unknown function unknown function 1 1027 1176
AFE86697.1 JQ740807_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11815 14805
AFE86721.1 JQ740807_p41 hypothetical protein phrog_1295 unknown function unknown function -1 24437 24652
AFE86684.1 JQ740807_p4 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1178 2800
AFE86689.1 JQ740807_p9 structural protein phrog_1428 head-tail connector protein connector 1 5935 6198
AFE86705.1 JQ740807_p25 hypothetical protein phrog_34114 unknown function unknown function -1 19260 19625
AFE86709.1 JQ740807_p29 hypothetical protein phrog_1820 unknown function unknown function -1 20642 20818
AFE86712.1 JQ740807_p32 hypothetical protein phrog_3530 unknown function unknown function -1 21385 21825
AFE86700.1 JQ740807_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16818 17111
AFE86733.1 JQ740807_p53 hypothetical protein phrog_1436 unknown function unknown function 1 29475 29606
AFE86725.1 JQ740807_p45 hypothetical protein phrog_1632 unknown function unknown function -1 25795 26082
AFE86696.1 JQ740807_p16 structural protein phrog_1421 virion structural protein head and packaging 1 11303 11815
AFE86715.1 JQ740807_p35 hypothetical protein phrog_3002 unknown function unknown function -1 22246 22440
AFE86723.1 JQ740807_p43 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 25031 25585
AFE86688.1 JQ740807_p8 structural protein phrog_1393 minor head protein head and packaging 1 4733 5914
AFE86727.1 JQ740807_p47 hypothetical protein phrog_1405 unknown function unknown function -1 26503 26766
AFE86707.1 JQ740807_p27 hypothetical protein phrog_1415 unknown function unknown function -1 20128 20475
AFE86704.1 JQ740807_p24 hypothetical protein phrog_17309 unknown function unknown function -1 19104 19244
AFE86695.1 JQ740807_p15 structural protein phrog_1420 virion structural protein head and packaging 1 11008 11283
AFE86690.1 JQ740807_p10 structural protein phrog_1429 virion structural protein head and packaging 1 6198 6512
AFE86710.1 JQ740807_p30 hypothetical protein phrog_2530 unknown function unknown function -1 20820 21011
AFE86703.1 JQ740807_p23 lysin phrog_670 endolysin lysis 1 18284 18964
AFE86693.1 JQ740807_p13 neck passage structure protein phrog_16313 virion structural protein head and packaging 1 7263 9929
AFE86716.1 JQ740807_p36 hypothetical protein phrog_20711 unknown function unknown function -1 22451 22699
AFE86702.1 JQ740807_p22 bifunctional anti-holin / holin phrog_1379 unknown function unknown function 1 17934 18287
AFE86685.1 JQ740807_p5 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2790 3074
AFE86681.1 JQ740807_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 263 787
AFE86730.1 JQ740807_p50 hypothetical protein phrog_2413 unknown function unknown function -1 28486 28605
AFE86686.1 JQ740807_p6 portal protein phrog_12 portal protein head and packaging 1 3087 4223
AFE86731.1 JQ740807_p51 hypothetical protein phrog_1656 unknown function unknown function -1 29024 29212