| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ740808 |
Definition |
Lactococcus Phage ASCC497, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
31774 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
34.63 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE87805.1 | JQ740808_p33 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 21540 | 21980 |
| AFE87813.1 | JQ740808_p41 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 24089 | 24595 |
| AFE87821.1 | JQ740808_p49 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27158 | 27421 |
| AFE87812.1 | JQ740808_p40 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 23685 | 24002 |
| AFE87790.1 | JQ740808_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14805 | 15701 |
| AFE87824.1 | JQ740808_p52 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29429 | 29845 |
| AFE87803.1 | JQ740808_p31 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20975 | 21166 |
| AFE87807.1 | JQ740808_p35 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 22285 | 22404 |
| AFE87777.1 | JQ740808_p5 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2790 | 3074 |
| AFE87825.1 | JQ740808_p53 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 29842 | 30030 |
| AFE87817.1 | JQ740808_p45 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25737 | 26237 |
| AFE87796.1 | JQ740808_p24 | hypothetical protein | phrog_17309 | unknown function | unknown function | -1 | 19104 | 19244 |
| AFE87775.1 | JQ740808_p3 | hypothetical protein | phrog_9973 | unknown function | unknown function | 1 | 1027 | 1176 |
| AFE87786.1 | JQ740808_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 10048 | 10953 |
| AFE87800.1 | JQ740808_p28 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 20283 | 20630 |
| AFE87795.1 | JQ740808_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 18284 | 18964 |
| AFE87788.1 | JQ740808_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11303 | 11815 |
| AFE87797.1 | JQ740808_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19340 | 19513 |
| AFE87798.1 | JQ740808_p26 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19704 | 19973 |
| AFE87778.1 | JQ740808_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3087 | 4223 |
| AFE87802.1 | JQ740808_p30 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20797 | 20973 |
| AFE87789.1 | JQ740808_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11815 | 14805 |
| AFE87799.1 | JQ740808_p27 | hypothetical protein | phrog_10611 | unknown function | unknown function | -1 | 19974 | 20123 |
| AFE87809.1 | JQ740808_p37 | hypothetical protein | phrog_20711 | unknown function | unknown function | -1 | 22606 | 22854 |
| AFE87806.1 | JQ740808_p34 | early protein | phrog_1225 | unknown function | unknown function | -1 | 21977 | 22285 |
| AFE87787.1 | JQ740808_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 11008 | 11283 |
| AFE87776.1 | JQ740808_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1178 | 2800 |
| AFE87785.1 | JQ740808_p13 | neck passage structure protein | phrog_16313 | virion structural protein | head and packaging | 1 | 7263 | 9929 |
| AFE87781.1 | JQ740808_p9 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5935 | 6198 |
| AFE87801.1 | JQ740808_p29 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 20630 | 20797 |
| AFE87819.1 | JQ740808_p47 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26447 | 26734 |
| AFE87791.1 | JQ740808_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15701 | 16828 |
| AFE87774.1 | JQ740808_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 784 | 1014 |
| AFE87808.1 | JQ740808_p36 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 22401 | 22595 |
| AFE87810.1 | JQ740808_p38 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22893 | 23192 |
| AFE87828.1 | JQ740808_p56 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30421 | 30903 |
| AFE87792.1 | JQ740808_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16818 | 17111 |
| AFE87811.1 | JQ740808_p39 | hypothetical protein | phrog_4000 | unknown function | unknown function | -1 | 23179 | 23439 |
| AFE87782.1 | JQ740808_p10 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6198 | 6512 |
| AFE87814.1 | JQ740808_p42 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24592 | 24807 |
| AFE87816.1 | JQ740808_p44 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25186 | 25740 |
| AFE87804.1 | JQ740808_p32 | early protein | phrog_1509 | unknown function | unknown function | -1 | 21208 | 21465 |
| AFE87815.1 | JQ740808_p43 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24823 | 25182 |
| AFE87784.1 | JQ740808_p12 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6841 | 7206 |
| AFE87827.1 | JQ740808_p55 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30293 | 30424 |
| AFE87779.1 | JQ740808_p7 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4204 | 4740 |
| AFE87794.1 | JQ740808_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 17934 | 18287 |
| AFE87818.1 | JQ740808_p46 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26239 | 26490 |
| AFE87820.1 | JQ740808_p48 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26736 | 27065 |
| AFE87823.1 | JQ740808_p51 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28357 | 28578 |
| AFE87773.1 | JQ740808_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 263 | 787 |
| AFE87793.1 | JQ740808_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 17101 | 17919 |
| AFE87826.1 | JQ740808_p54 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 30061 | 30288 |
| AFE87780.1 | JQ740808_p8 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4733 | 5914 |
| AFE87822.1 | JQ740808_p50 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27414 | 28364 |
| AFE87783.1 | JQ740808_p11 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6509 | 6850 |