| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ740810 |
Definition |
Lactococcus Phage ASCC506, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
32249 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.48 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE87918.1 | JQ740810_p32 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 20676 | 20891 |
| AFE87905.1 | JQ740810_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 14786 | 15913 |
| AFE87943.1 | JQ740810_p57 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30535 | 30666 |
| AFE87919.1 | JQ740810_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 20950 | 21258 |
| AFE87934.1 | JQ740810_p48 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26558 | 26938 |
| AFE87935.1 | JQ740810_p49 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26985 | 27248 |
| AFE87927.1 | JQ740810_p41 | hypothetical protein | phrog_13331 | unknown function | unknown function | -1 | 24092 | 24412 |
| AFE87900.1 | JQ740810_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9455 | 10360 |
| AFE87907.1 | JQ740810_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16186 | 16944 |
| AFE87942.1 | JQ740810_p56 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30402 | 30542 |
| AFE87887.1 | JQ740810_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 251 | 775 |
| AFE87922.1 | JQ740810_p36 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 21524 | 21874 |
| AFE87916.1 | JQ740810_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20093 | 20350 |
| AFE87925.1 | JQ740810_p39 | hypothetical protein | phrog_9706 | unknown function | unknown function | -1 | 23313 | 23498 |
| AFE87941.1 | JQ740810_p55 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30083 | 30271 |
| AFE87908.1 | JQ740810_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 16966 | 17319 |
| AFE87890.1 | JQ740810_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2626 | 2910 |
| AFE87944.1 | JQ740810_p58 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30663 | 31145 |
| AFE87898.1 | JQ740810_p12 | neck passage structure protein | phrog_7918 | neck passage structure protein | connector | 1 | 7089 | 9260 |
| AFE87931.1 | JQ740810_p45 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25564 | 26064 |
| AFE87936.1 | JQ740810_p50 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27241 | 28191 |
| AFE87929.1 | JQ740810_p43 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24637 | 24996 |
| AFE87917.1 | JQ740810_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 20413 | 20601 |
| AFE87897.1 | JQ740810_p11 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6667 | 7032 |
| AFE87940.1 | JQ740810_p54 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29663 | 30082 |
| AFE87901.1 | JQ740810_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10399 | 10674 |
| AFE87912.1 | JQ740810_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19168 | 19515 |
| AFE87909.1 | JQ740810_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17316 | 18020 |
| AFE87906.1 | JQ740810_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 15903 | 16196 |
| AFE87896.1 | JQ740810_p10 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6338 | 6673 |
| AFE87930.1 | JQ740810_p44 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25001 | 25567 |
| AFE87939.1 | JQ740810_p53 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 28655 | 28855 |
| AFE87937.1 | JQ740810_p51 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28184 | 28405 |
| AFE87920.1 | JQ740810_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21258 | 21377 |
| AFE87903.1 | JQ740810_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11206 | 13890 |
| AFE87938.1 | JQ740810_p52 | hypothetical protein | phrog_12718 | unknown function | unknown function | -1 | 28475 | 28654 |
| AFE87904.1 | JQ740810_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 13890 | 14786 |
| AFE87914.1 | JQ740810_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19682 | 19858 |
| AFE87893.1 | JQ740810_p7 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4569 | 5750 |
| AFE87910.1 | JQ740810_p24 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 18117 | 18665 |
| AFE87891.1 | JQ740810_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2923 | 4059 |
| AFE87895.1 | JQ740810_p9 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6034 | 6348 |
| AFE87926.1 | JQ740810_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23539 | 24072 |
| AFE87899.1 | JQ740810_p13 | structural protein | phrog_15944 | virion structural protein | head and packaging | 1 | 9297 | 9434 |
| AFE87932.1 | JQ740810_p46 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26051 | 26317 |
| AFE87915.1 | JQ740810_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19860 | 20051 |
| AFE87894.1 | JQ740810_p8 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5771 | 6034 |
| AFE87928.1 | JQ740810_p42 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24409 | 24624 |
| AFE87902.1 | JQ740810_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10694 | 11206 |
| AFE87933.1 | JQ740810_p47 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26274 | 26561 |
| AFE87911.1 | JQ740810_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18726 | 18995 |
| AFE87888.1 | JQ740810_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 772 | 1002 |
| AFE87921.1 | JQ740810_p35 | hypothetical protein | phrog_17643 | unknown function | unknown function | -1 | 21414 | 21527 |
| AFE87924.1 | JQ740810_p38 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22843 | 23091 |
| AFE87892.1 | JQ740810_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4040 | 4576 |
| AFE87913.1 | JQ740810_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19515 | 19682 |
| AFE87923.1 | JQ740810_p37 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 21936 | 22850 |
| AFE87889.1 | JQ740810_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1014 | 2636 |