| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JQ740811 |
Definition |
Lactococcus Phage ASCC527, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
32345 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.54 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFE87961.1 | JQ740811_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11265 | 13949 |
| AFE87981.1 | JQ740811_p37 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 22032 | 22946 |
| AFE87993.1 | JQ740811_p49 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27081 | 27344 |
| AFE87992.1 | JQ740811_p48 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26654 | 27034 |
| AFE87982.1 | JQ740811_p38 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22939 | 23187 |
| AFE87975.1 | JQ740811_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 20509 | 20697 |
| AFE87989.1 | JQ740811_p45 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25660 | 26160 |
| AFE87965.1 | JQ740811_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16245 | 17039 |
| AFE87957.1 | JQ740811_p13 | structural protein | phrog_15944 | virion structural protein | head and packaging | 1 | 9356 | 9493 |
| AFE88002.1 | JQ740811_p58 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30759 | 31241 |
| AFE87990.1 | JQ740811_p46 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26147 | 26413 |
| AFE87978.1 | JQ740811_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21354 | 21473 |
| AFE88001.1 | JQ740811_p57 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30631 | 30762 |
| AFE87988.1 | JQ740811_p44 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25097 | 25663 |
| AFE87946.1 | JQ740811_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 762 | 992 |
| AFE87952.1 | JQ740811_p8 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5761 | 6024 |
| AFE87963.1 | JQ740811_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 14845 | 15972 |
| AFE87997.1 | JQ740811_p53 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 28751 | 28951 |
| AFE87953.1 | JQ740811_p9 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6024 | 6338 |
| AFE87970.1 | JQ740811_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19264 | 19611 |
| AFE87998.1 | JQ740811_p54 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29876 | 30178 |
| AFE87985.1 | JQ740811_p41 | hypothetical protein | phrog_13331 | unknown function | unknown function | -1 | 24188 | 24508 |
| AFE87947.1 | JQ740811_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1004 | 2626 |
| AFE87968.1 | JQ740811_p24 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 18213 | 18761 |
| AFE87980.1 | JQ740811_p36 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 21620 | 21970 |
| AFE87973.1 | JQ740811_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19956 | 20147 |
| AFE87977.1 | JQ740811_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 21046 | 21354 |
| AFE87948.1 | JQ740811_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2616 | 2900 |
| AFE87949.1 | JQ740811_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2913 | 4049 |
| AFE88000.1 | JQ740811_p56 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30498 | 30638 |
| AFE87994.1 | JQ740811_p50 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27337 | 28287 |
| AFE87966.1 | JQ740811_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 17061 | 17414 |
| AFE87959.1 | JQ740811_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10458 | 10733 |
| AFE87974.1 | JQ740811_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20189 | 20440 |
| AFE87987.1 | JQ740811_p43 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24733 | 25092 |
| AFE87951.1 | JQ740811_p7 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4559 | 5740 |
| AFE87984.1 | JQ740811_p40 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23635 | 24168 |
| AFE87972.1 | JQ740811_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19778 | 19954 |
| AFE87986.1 | JQ740811_p42 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24505 | 24720 |
| AFE87958.1 | JQ740811_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9514 | 10419 |
| AFE87999.1 | JQ740811_p55 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30179 | 30367 |
| AFE87960.1 | JQ740811_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10753 | 11265 |
| AFE87964.1 | JQ740811_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 15962 | 16255 |
| AFE87995.1 | JQ740811_p51 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28280 | 28501 |
| AFE87954.1 | JQ740811_p10 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6328 | 6663 |
| AFE87956.1 | JQ740811_p12 | neck passage structure protein | phrog_7918 | neck passage structure protein | connector | 1 | 7079 | 9319 |
| AFE87945.1 | JQ740811_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 241 | 765 |
| AFE87950.1 | JQ740811_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4030 | 4566 |
| AFE87971.1 | JQ740811_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19611 | 19778 |
| AFE87955.1 | JQ740811_p11 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6657 | 7022 |
| AFE87962.1 | JQ740811_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 13949 | 14845 |
| AFE87991.1 | JQ740811_p47 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26370 | 26657 |
| AFE87996.1 | JQ740811_p52 | hypothetical protein | phrog_12718 | unknown function | unknown function | -1 | 28571 | 28750 |
| AFE87976.1 | JQ740811_p32 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 20772 | 20987 |
| AFE87979.1 | JQ740811_p35 | hypothetical protein | phrog_17643 | unknown function | unknown function | -1 | 21510 | 21623 |
| AFE87967.1 | JQ740811_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17411 | 18115 |
| AFE87983.1 | JQ740811_p39 | hypothetical protein | phrog_9706 | unknown function | unknown function | -1 | 23409 | 23594 |
| AFE87969.1 | JQ740811_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18822 | 19091 |